Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.genebee.msu.ru/~bennigsen/nhunt_files/ex2/blast_default.out Дата изменения: Sun Oct 16 23:50:47 2011 Дата индексирования: Mon Oct 1 19:32:28 2012 Кодировка:

BLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: archaea.fasta
5 sequences; 10,953,209 total letters



Query= NC_000913.2 NC_000913.2 Escherichia coli str. K-12 substr. MG1655
chromosome, complete genome

Length=300
Score E
Sequences producing significant alignments: (Bits) Value

embl|AE009441|AE009441 Pyrobaculum aerophilum str. IM2, complet... 55.4 6e-08
embl|AE006641|AE006641 Sulfolobus solfataricus P2, complete genome 50.0 3e-06
embl|AE004437|AE004437 Halobacterium sp. NRC-1, complete genome 41.0 0.001
embl|AE000782|AE000782 Archaeoglobus fulgidus DSM 4304, complet... 41.0 0.001


> embl|AE009441|AE009441 Pyrobaculum aerophilum str. IM2, complete
genome.
Length=2222430

Score = 55.4 bits (60), Expect = 6e-08
Identities = 53/68 (78%), Gaps = 0/68 (0%)
Strand=Plus/Plus

Query 141 TTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCGGGCTC 200
||||||||| |||||||| || || ||| | ||||| ||||||||||||||||
Sbjct 1090874 TTACTGGGCTTAAAGCGCCCGTAGCCGGCCCGGCAAGTCGCTCCTGAAATCCCCGGGCTC 1090933

Query 201 AACCTGGG 208
|||| |||
Sbjct 1090934 AACCCGGG 1090941


Score = 30.1 bits (32), Expect = 2.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus

Query 103 AGCCGCGGTAATACGG 118
||||||||||||||||
Sbjct 2071246 AGCCGCGGTAATACGG 2071261


Score = 28.3 bits (30), Expect = 8.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus

Query 222 ACTGGCAAGCTTGAG 236
|||||||||||||||
Sbjct 1220282 ACTGGCAAGCTTGAG 1220296


> embl|AE006641|AE006641 Sulfolobus solfataricus P2, complete genome.

Length=2992245

Score = 50.0 bits (54), Expect = 3e-06
Identities = 134/204 (66%), Gaps = 6/204 (2%)
Strand=Plus/Plus

Query 95 GTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAA---TTACTGGGCGT 151
||| |||| ||||||||||||| || || | |||| | ||||||||| |
Sbjct 872146 GTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAG---TGGTCGGGACTCTTACTGGGCCT 872202

Query 152 AAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCGGGCTCAACCTGGGAAC 211
||||||| || || ||| | |||||| | ||| ||| ||||||||| ||| |
Sbjct 872203 AAAGCGCCCGTAGCCGGCCCGACAAGTCACTCCTTAAAGACCCCGGCTCAACCGGGGGAA 872262

Query 212 TGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAGAATTCCAGGTGTAGCGG 271
|| |||||||| | ||| | | | ||||| | | | ||| || |||| ||
Sbjct 872263 TGGGGGTGATACTGTCGGGCTAGGGGGCGGGAGAGGCCAGCGGTACTCCCGGAGTAGGGG 872322

Query 272 TGAAATGCGTAGAGATCTGGAGGA 295
||||| | ||| || ||||||
Sbjct 872323 CGAAATCCTCAGATCTCGGGAGGA 872346


Score = 28.3 bits (30), Expect = 8.9
Identities = 17/18 (95%), Gaps = 0/18 (0%)
Strand=Plus/Plus

Query 27 GAGGAAGGGAGTAAAGTT 44
|||||||||||| |||||
Sbjct 1397876 GAGGAAGGGAGTTAAGTT 1397893


Score = 28.3 bits (30), Expect = 8.9
Identities = 17/18 (95%), Gaps = 0/18 (0%)
Strand=Plus/Minus

Query 27 GAGGAAGGGAGTAAAGTT 44
|||||||||||| |||||
Sbjct 1532014 GAGGAAGGGAGTTAAGTT 1531997


Score = 28.3 bits (30), Expect = 8.9
Identities = 17/18 (95%), Gaps = 0/18 (0%)
Strand=Plus/Minus

Query 27 GAGGAAGGGAGTAAAGTT 44
|||||||||||| |||||
Sbjct 1610849 GAGGAAGGGAGTTAAGTT 1610832


Score = 28.3 bits (30), Expect = 8.9
Identities = 17/18 (95%), Gaps = 0/18 (0%)
Strand=Plus/Minus

Query 27 GAGGAAGGGAGTAAAGTT 44
|||||||||||| |||||
Sbjct 2614357 GAGGAAGGGAGTTAAGTT 2614340


Score = 28.3 bits (30), Expect = 8.9
Identities = 17/18 (95%), Gaps = 0/18 (0%)
Strand=Plus/Plus

Query 27 GAGGAAGGGAGTAAAGTT 44
|||||||||||| |||||
Sbjct 2670714 GAGGAAGGGAGTTAAGTT 2670731


Score = 28.3 bits (30), Expect = 8.9
Identities = 17/18 (95%), Gaps = 0/18 (0%)
Strand=Plus/Plus

Query 27 GAGGAAGGGAGTAAAGTT 44
|||||||||||| |||||
Sbjct 2854021 GAGGAAGGGAGTTAAGTT 2854038


> embl|AE004437|AE004437 Halobacterium sp. NRC-1, complete genome.

Length=2014239

Score = 41.0 bits (44), Expect = 0.001
Identities = 67/97 (70%), Gaps = 0/97 (0%)
Strand=Plus/Plus

Query 95 GTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAA 154
|||||||| ||||||||||||| | || | || | | || ||| ||||| ||||
Sbjct 1875957 GTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGGCCTAAA 1876016

Query 155 GCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATC 191
||| || || || | ||||| | || ||||||
Sbjct 1876017 GCGTCCGTAGCTGGCTGAACAAGTCCGTTGGGAAATC 1876053


Score = 28.3 bits (30), Expect = 8.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus

Query 19 TCAGCGGGGAGGAAG 33
|||||||||||||||
Sbjct 1481717 TCAGCGGGGAGGAAG 1481731


> embl|AE000782|AE000782 Archaeoglobus fulgidus DSM 4304, complete
genome.
Length=2178400

Score = 41.0 bits (44), Expect = 0.001
Identities = 120/184 (66%), Gaps = 1/184 (0%)
Strand=Plus/Minus

Query 95 GTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAA 154
||| |||| ||||||||||||| | || | || | | ||| ||||| ||||
Sbjct 1790011 GTGGCAGCCGCCGCGGTAATACCGGCGGCCCGAGTGGCGGCCACTTTTATTGGGCCTAAA 1789952

Query 155 GCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCGGGCTCAACCTGGGAACTG- 213
||| || || ||| || |||||| | |||||| |||| |||| ||||
Sbjct 1789951 GCGTCCGTAGCCGGGCTGGTAAGTCCTCCGGGAAATCTGGCGGCTTAACCGTCAGACTGC 1789892

Query 214 CATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTG 273
| ||||||| || || | | | | ||||| || | ||||| || |||| ||||
Sbjct 1789891 CGGAGGATACTGCCAGCCTAGGGACCGGGAGAGGCCGGGGGTATTCCCGGAGTAGGGGTG 1789832

Query 274 AAAT 277
||||
Sbjct 1789831 AAAT 1789828



Lambda K H
0.634 0.408 0.912

Gapped
Lambda K H
0.625 0.410 0.780

Effective search space used: 3023052564


Database: archaea.fasta
Posted date: Oct 13, 2011 3:03 AM
Number of letters in database: 10,953,209
Number of sequences in database: 5



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2