Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.genebee.msu.ru/~bennigsen/nhunt_files/ex2/megablast.out Дата изменения: Sun Oct 16 23:50:47 2011 Дата индексирования: Mon Oct 1 19:31:50 2012 Кодировка:

BLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: archaea.fasta
5 sequences; 10,953,209 total letters



Query= NC_000913.2 NC_000913.2 Escherichia coli str. K-12 substr. MG1655
chromosome, complete genome

Length=300
Score E
Sequences producing significant alignments: (Bits) Value

embl|AE004437|AE004437 Halobacterium sp. NRC-1, complete genome 78.0 8e-15


> embl|AE004437|AE004437 Halobacterium sp. NRC-1, complete genome.

Length=2014239

Score = 78.0 bits (315), Expect = 8e-15
Identities = 139/225 (62%), Gaps = 3/225 (1%)
Strand=Plus/Plus

Query 74 GAAGAAGCACCGGCTAACTCCG-TGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTT 132
||| ||| || || || ||| ||||||| ||||||||||||| | || | || | |
Sbjct 1875935 GAATAAGGACTGGGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGAT 1875994

Query 133 AATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCC 192
|| ||| ||||| ||||||| || || || | ||||| | || ||||||
Sbjct 1875995 GGCCGATCTTATTGGGCCTAAAGCGTCCGTAGCTGGCTGAACAAGTCCGTTGGGAAATCT 1876054

Query 193 CCGGGCTCAACCTG-GGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGG 251
||| ||| | | | || | || |||| |||||| | | | ||| | |
Sbjct 1876055 GTCCGCTTAACGGGCAGGCGTCCAGCGGAAACTGTTCAGCTTGGGACCGGAAGACCTGAG 1876114

Query 252 TAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAA 296
| | | || |||| ||||||| | | | ||||| | |
Sbjct 1876115 GGGTACGTCTGGGGTAGGAGTGAAAT-CCTGTAATCCTGGACGGA 1876158



Lambda K H
0.192 0.176 0.357

Gapped
Lambda K H
0.163 0.0680 0.160

Effective search space used: 2234356716


Database: archaea.fasta
Posted date: Oct 13, 2011 3:03 AM
Number of letters in database: 10,953,209
Number of sequences in database: 5



Matrix: blastn matrix 5 -4
Gap Penalties: Existence: 10, Extension: 6
Window for multiple hits: 40