Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/4j19.std.txt Дата изменения: Tue Jul 30 16:29:07 2013 Дата индексирования: Fri Feb 28 14:42:17 2014 Кодировка:

REM -------------------------------------------------------------------- 4J19
REM 4J19
REM STRIDE: Knowledge-based secondary structure assignment 4J19
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4J19
REM 4J19
REM Residue accessible surface area calculation 4J19
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4J19
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4J19
REM 4J19
REM ------------------------ General information ----------------------- 4J19
REM 4J19
HDR TRANSCRIPTION/DNA 01-FEB-13 4J19 4J19
CMP MOL_ID: 1; 4J19
CMP MOLECULE: HOMEOBOX-CONTAINING PROTEIN 1; 4J19
CMP CHAIN: A, B; 4J19
CMP FRAGMENT: DNA-BINDING DOMAIN, RESIDUES 233-345; 4J19
CMP ENGINEERED: YES; 4J19
CMP MOL_ID: 2; 4J19
CMP MOLECULE: DNA (5'- 4J19
CMP D(*CP*TP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)- 4J19
CMP CHAIN: C; 4J19
CMP ENGINEERED: YES; 4J19
CMP MOL_ID: 3; 4J19
CMP MOLECULE: DNA (5'- 4J19
CMP D(*TP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*A)- 4J19
CMP CHAIN: D; 4J19
CMP ENGINEERED: YES 4J19
SRC MOL_ID: 1; 4J19
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 4J19
SRC ORGANISM_COMMON: HUMAN; 4J19
SRC ORGANISM_TAXID: 9606; 4J19
SRC GENE: HMBOX1; 4J19
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4J19
SRC EXPRESSION_SYSTEM_TAXID: 562; 4J19
SRC MOL_ID: 2; 4J19
SRC SYNTHETIC: YES; 4J19
SRC MOL_ID: 3; 4J19
SRC SYNTHETIC: YES 4J19
AUT D.KAPPEI,F.BUTTER,C.BENDA,M.SCHEIBE,I.DRASKOVIC,M.STEVENSE,C. 4J19
AUT NOVO,C.BASQUIN,D.B.KRASTEV,R.KITTLER,R.JESSBERGER,A.J.LONDON 4J19
AUT VALLEJO,M.MANN,F.BUCHHOLZ 4J19
REM 4J19
REM -------------------- Secondary structure summary ------------------- 4J19
REM 4J19
CHN /data/npidb/pdb/pdb_new/all/pdb4j19.pdb A 4J19
REM 4J19
REM . . . . . 4J19
SEQ 1 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDL 50 4J19
STR HHHHHHHHHHHHTTTTT HHHHHHHHHHHHHHH TTTT TTT 4J19
REM 4J19
REM . . 4J19
SEQ 51 ERVTSLKVYNWFANRRKEIKRRANIEA 77 4J19
STR TT HHHHHHHHHHHHHHHHHHHHHH 4J19
REM 4J19
CHN /data/npidb/pdb/pdb_new/all/pdb4j19.pdb B 4J19
REM 4J19
REM . . . . . 4J19
SEQ 1 RRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLS 50 4J19
STR HHHHHHHHHHHHHTTTT HHHHHHHHHHHHHHH TTTT T 4J19
REM 4J19
REM . . 4J19
SEQ 51 DLERVTSLKVYNWFANRRKEIKRRAN 76 4J19
STR TTTT HHHHHHHHHHHHHHHHHH 4J19
REM 4J19
REM 4J19
REM 4J19
LOC AlphaHelix LYS 276 A ASN 287 A 4J19
LOC AlphaHelix GLU 294 A ILE 308 A 4J19
LOC AlphaHelix SER 323 A GLU 344 A 4J19
LOC AlphaHelix LYS 276 B GLU 288 B 4J19
LOC AlphaHelix GLU 294 B ILE 308 B 4J19
LOC AlphaHelix SER 323 B ARG 340 B 4J19
LOC TurnVIII ASN 287 A GLN 290 A 4J19
LOC TurnIV ASN 289 A PRO 292 A 4J19
LOC TurnII LYS 310 A LYS 313 A 4J19
LOC TurnIV SER 316 A GLU 319 A 4J19
LOC TurnI ASP 317 A ARG 320 A 4J19
LOC TurnIV ASN 289 B PRO 292 B 4J19
LOC TurnII LYS 310 B LYS 313 B 4J19
LOC TurnI SER 316 B GLU 319 B 4J19
LOC TurnI ASP 317 B ARG 320 B 4J19
REM 4J19
REM --------------- Detailed secondary structure assignment------------- 4J19
REM 4J19
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4J19
ASG GLY A 269 1 C Coil 360.00 -169.81 132.5 4J19
ASG SER A 270 2 C Coil -132.34 12.89 110.5 4J19
ASG ARG A 271 3 C Coil -113.58 151.26 207.7 4J19
ASG PHE A 272 4 C Coil -57.49 139.67 37.0 4J19
ASG THR A 273 5 C Coil -134.37 134.42 105.0 4J19
ASG TRP A 274 6 C Coil -80.46 125.89 55.1 4J19
ASG ARG A 275 7 C Coil -73.57 150.57 138.1 4J19
ASG LYS A 276 8 H AlphaHelix -56.38 -48.25 78.8 4J19
ASG GLU A 277 9 H AlphaHelix -57.44 -44.40 38.5 4J19
ASG CYS A 278 10 H AlphaHelix -57.63 -47.60 1.4 4J19
ASG LEU A 279 11 H AlphaHelix -57.71 -47.56 49.9 4J19
ASG ALA A 280 12 H AlphaHelix -52.39 -54.83 57.0 4J19
ASG VAL A 281 13 H AlphaHelix -51.42 -54.85 31.8 4J19
ASG MET A 282 14 H AlphaHelix -57.42 -43.77 0.0 4J19
ASG GLU A 283 15 H AlphaHelix -60.57 -39.75 74.1 4J19
ASG SER A 284 16 H AlphaHelix -54.62 -32.51 81.4 4J19
ASG TYR A 285 17 H AlphaHelix -83.16 -36.91 63.0 4J19
ASG PHE A 286 18 H AlphaHelix -57.13 -34.22 15.0 4J19
ASG ASN A 287 19 H AlphaHelix -72.52 -21.86 90.7 4J19
ASG GLU A 288 20 T Turn -88.88 -49.42 147.1 4J19
ASG ASN A 289 21 T Turn -149.96 136.89 50.5 4J19
ASG GLN A 290 22 T Turn -103.52 5.17 75.7 4J19
ASG TYR A 291 23 T Turn -133.74 63.62 81.1 4J19
ASG PRO A 292 24 T Turn -71.76 134.58 12.1 4J19
ASG ASP A 293 25 C Coil -74.86 177.90 102.5 4J19
ASG GLU A 294 26 H AlphaHelix -51.10 -54.55 87.3 4J19
ASG ALA A 295 27 H AlphaHelix -55.37 -44.92 63.7 4J19
ASG LYS A 296 28 H AlphaHelix -63.06 -45.35 54.3 4J19
ASG ARG A 297 29 H AlphaHelix -58.36 -39.49 34.7 4J19
ASG GLU A 298 30 H AlphaHelix -56.39 -54.99 72.8 4J19
ASG GLU A 299 31 H AlphaHelix -49.68 -50.50 116.2 4J19
ASG ILE A 300 32 H AlphaHelix -59.08 -48.98 0.2 4J19
ASG ALA A 301 33 H AlphaHelix -56.36 -51.26 1.2 4J19
ASG ASN A 302 34 H AlphaHelix -58.65 -41.81 91.1 4J19
ASG ALA A 303 35 H AlphaHelix -55.44 -53.57 32.3 4J19
ASG CYS A 304 36 H AlphaHelix -53.09 -54.87 0.0 4J19
ASG ASN A 305 37 H AlphaHelix -53.84 -46.65 11.6 4J19
ASG ALA A 306 38 H AlphaHelix -52.26 -40.59 72.9 4J19
ASG VAL A 307 39 H AlphaHelix -72.05 -50.01 82.8 4J19
ASG ILE A 308 40 H AlphaHelix -79.14 -6.57 17.3 4J19
ASG GLN A 309 41 C Coil -70.06 131.85 84.1 4J19
ASG LYS A 310 42 T Turn -105.96 152.57 51.0 4J19
ASG PRO A 311 43 T Turn -64.10 138.61 129.9 4J19
ASG GLY A 312 44 T Turn 60.50 32.24 95.5 4J19
ASG LYS A 313 45 T Turn -142.73 123.29 51.7 4J19
ASG LYS A 314 46 C Coil -83.81 126.49 99.5 4J19
ASG LEU A 315 47 C Coil -64.78 119.82 19.4 4J19
ASG SER A 316 48 T Turn -59.19 152.11 56.4 4J19
ASG ASP A 317 49 T Turn -52.30 -34.66 149.2 4J19
ASG LEU A 318 50 T Turn -68.48 -60.57 81.9 4J19
ASG GLU A 319 51 T Turn -71.93 -8.52 90.9 4J19
ASG ARG A 320 52 T Turn -72.31 133.67 108.0 4J19
ASG VAL A 321 53 C Coil -85.82 137.39 2.9 4J19
ASG THR A 322 54 C Coil -131.25 163.90 53.9 4J19
ASG SER A 323 55 H AlphaHelix -61.44 -31.88 11.9 4J19
ASG LEU A 324 56 H AlphaHelix -65.99 -43.62 113.6 4J19
ASG LYS A 325 57 H AlphaHelix -64.74 -43.19 39.4 4J19
ASG VAL A 326 58 H AlphaHelix -55.93 -50.53 0.0 4J19
ASG TYR A 327 59 H AlphaHelix -52.37 -55.90 120.5 4J19
ASG ASN A 328 60 H AlphaHelix -49.88 -47.15 87.6 4J19
ASG TRP A 329 61 H AlphaHelix -63.38 -48.44 27.5 4J19
ASG PHE A 330 62 H AlphaHelix -54.58 -51.08 2.2 4J19
ASG ALA A 331 63 H AlphaHelix -54.13 -54.52 8.8 4J19
ASG ASN A 332 64 H AlphaHelix -55.78 -37.11 94.9 4J19
ASG ARG A 333 65 H AlphaHelix -63.17 -54.84 65.7 4J19
ASG ARG A 334 66 H AlphaHelix -48.09 -49.72 58.7 4J19
ASG LYS A 335 67 H AlphaHelix -62.66 -44.14 114.7 4J19
ASG GLU A 336 68 H AlphaHelix -56.32 -45.71 102.2 4J19
ASG ILE A 337 69 H AlphaHelix -56.96 -53.94 81.7 4J19
ASG LYS A 338 70 H AlphaHelix -55.67 -35.50 107.9 4J19
ASG ARG A 339 71 H AlphaHelix -63.42 -54.04 148.2 4J19
ASG ARG A 340 72 H AlphaHelix -52.43 -35.98 62.5 4J19
ASG ALA A 341 73 H AlphaHelix -61.63 -49.20 53.6 4J19
ASG ASN A 342 74 H AlphaHelix -68.36 -32.87 101.6 4J19
ASG ILE A 343 75 H AlphaHelix -55.03 -44.13 89.5 4J19
ASG GLU A 344 76 H AlphaHelix -88.75 36.55 91.8 4J19
ASG ALA A 345 77 C Coil -172.46 360.00 121.5 4J19
ASG ARG B 267 1 C Coil 360.00 8.79 293.9 4J19
ASG ARG B 268 2 C Coil -85.60 -2.58 169.5 4J19
ASG GLY B 269 3 C Coil -72.41 156.36 60.9 4J19
ASG SER B 270 4 C Coil -52.65 147.85 108.5 4J19
ASG ARG B 271 5 C Coil -95.71 137.34 220.4 4J19
ASG PHE B 272 6 C Coil -80.01 139.89 54.2 4J19
ASG THR B 273 7 C Coil -116.51 131.17 107.3 4J19
ASG TRP B 274 8 C Coil -78.90 120.34 50.5 4J19
ASG ARG B 275 9 C Coil -75.89 140.19 84.9 4J19
ASG LYS B 276 10 H AlphaHelix -44.66 -34.30 77.3 4J19
ASG GLU B 277 11 H AlphaHelix -74.63 -31.78 78.5 4J19
ASG CYS B 278 12 H AlphaHelix -71.91 -43.67 2.6 4J19
ASG LEU B 279 13 H AlphaHelix -55.87 -33.06 49.9 4J19
ASG ALA B 280 14 H AlphaHelix -62.66 -52.46 53.9 4J19
ASG VAL B 281 15 H AlphaHelix -55.19 -47.77 26.6 4J19
ASG MET B 282 16 H AlphaHelix -54.13 -57.57 0.0 4J19
ASG GLU B 283 17 H AlphaHelix -60.58 -40.29 73.6 4J19
ASG SER B 284 18 H AlphaHelix -51.09 -60.20 58.9 4J19
ASG TYR B 285 19 H AlphaHelix -62.16 -27.77 45.4 4J19
ASG PHE B 286 20 H AlphaHelix -69.72 -43.87 3.2 4J19
ASG ASN B 287 21 H AlphaHelix -64.01 -37.90 124.7 4J19
ASG GLU B 288 22 H AlphaHelix -60.44 -46.05 128.4 4J19
ASG ASN B 289 23 T Turn -166.52 133.23 78.1 4J19
ASG GLN B 290 24 T Turn -99.32 13.37 78.4 4J19
ASG TYR B 291 25 T Turn -139.69 74.60 153.9 4J19
ASG PRO B 292 26 T Turn -73.22 137.33 15.9 4J19
ASG ASP B 293 27 C Coil -77.65 169.72 101.5 4J19
ASG GLU B 294 28 H AlphaHelix -49.54 -53.72 81.1 4J19
ASG ALA B 295 29 H AlphaHelix -56.30 -41.72 63.3 4J19
ASG LYS B 296 30 H AlphaHelix -63.61 -44.36 56.7 4J19
ASG ARG B 297 31 H AlphaHelix -59.14 -43.57 44.7 4J19
ASG GLU B 298 32 H AlphaHelix -58.66 -43.63 98.9 4J19
ASG GLU B 299 33 H AlphaHelix -54.27 -53.61 85.2 4J19
ASG ILE B 300 34 H AlphaHelix -62.62 -35.19 0.8 4J19
ASG ALA B 301 35 H AlphaHelix -62.14 -54.68 3.8 4J19
ASG ASN B 302 36 H AlphaHelix -57.96 -41.29 104.9 4J19
ASG ALA B 303 37 H AlphaHelix -53.45 -53.10 26.6 4J19
ASG CYS B 304 38 H AlphaHelix -61.43 -50.06 0.0 4J19
ASG ASN B 305 39 H AlphaHelix -53.84 -43.20 18.8 4J19
ASG ALA B 306 40 H AlphaHelix -58.87 -26.99 76.3 4J19
ASG VAL B 307 41 H AlphaHelix -84.89 -23.55 73.7 4J19
ASG ILE B 308 42 H AlphaHelix -104.50 -27.21 8.5 4J19
ASG GLN B 309 43 C Coil -60.42 127.14 98.0 4J19
ASG LYS B 310 44 T Turn -82.45 136.49 109.7 4J19
ASG PRO B 311 45 T Turn -55.83 130.37 127.5 4J19
ASG GLY B 312 46 T Turn 91.09 -2.47 88.5 4J19
ASG LYS B 313 47 T Turn -129.69 132.30 133.9 4J19
ASG LYS B 314 48 C Coil -67.39 154.04 180.2 4J19
ASG LEU B 315 49 C Coil -83.00 126.24 12.8 4J19
ASG SER B 316 50 T Turn -63.49 149.58 53.8 4J19
ASG ASP B 317 51 T Turn -62.46 -21.31 138.2 4J19
ASG LEU B 318 52 T Turn -81.71 -21.46 150.2 4J19
ASG GLU B 319 53 T Turn -105.36 -29.20 66.6 4J19
ASG ARG B 320 54 T Turn -59.78 134.72 66.1 4J19
ASG VAL B 321 55 C Coil -84.03 134.95 2.7 4J19
ASG THR B 322 56 C Coil -117.18 162.61 60.0 4J19
ASG SER B 323 57 H AlphaHelix -57.08 -30.81 27.7 4J19
ASG LEU B 324 58 H AlphaHelix -70.73 -43.24 101.0 4J19
ASG LYS B 325 59 H AlphaHelix -55.55 -48.31 58.4 4J19
ASG VAL B 326 60 H AlphaHelix -58.51 -49.02 0.0 4J19
ASG TYR B 327 61 H AlphaHelix -49.80 -61.37 99.6 4J19
ASG ASN B 328 62 H AlphaHelix -54.41 -39.99 73.0 4J19
ASG TRP B 329 63 H AlphaHelix -57.99 -52.04 31.2 4J19
ASG PHE B 330 64 H AlphaHelix -56.34 -52.19 0.8 4J19
ASG ALA B 331 65 H AlphaHelix -54.05 -55.21 9.2 4J19
ASG ASN B 332 66 H AlphaHelix -54.01 -48.61 96.2 4J19
ASG ARG B 333 67 H AlphaHelix -57.74 -48.88 69.7 4J19
ASG ARG B 334 68 H AlphaHelix -51.16 -50.17 53.6 4J19
ASG LYS B 335 69 H AlphaHelix -56.67 -50.42 146.1 4J19
ASG GLU B 336 70 H AlphaHelix -55.57 -46.61 75.9 4J19
ASG ILE B 337 71 H AlphaHelix -59.05 -53.30 66.7 4J19
ASG LYS B 338 72 H AlphaHelix -56.15 -39.24 65.8 4J19
ASG ARG B 339 73 H AlphaHelix -68.39 -41.49 71.1 4J19
ASG ARG B 340 74 H AlphaHelix -74.76 -0.09 198.8 4J19
ASG ALA B 341 75 C Coil -97.49 1.41 75.8 4J19
ASG ASN B 342 76 C Coil 58.45 360.00 190.3 4J19