Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/4hdu.std.txt Дата изменения: Sun Jan 13 21:01:10 2013 Дата индексирования: Sun Feb 3 22:35:59 2013 Кодировка:

REM -------------------------------------------------------------------- 4HDU
REM 4HDU
REM STRIDE: Knowledge-based secondary structure assignment 4HDU
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4HDU
REM 4HDU
REM Residue accessible surface area calculation 4HDU
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4HDU
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4HDU
REM 4HDU
REM ------------------------ General information ----------------------- 4HDU
REM 4HDU
HDR DNA BINDING PROTEIN/DNA 02-OCT-12 4HDU 4HDU
CMP MOL_ID: 1; 4HDU
CMP MOLECULE: ALKYLTRANSFERASE-LIKE PROTEIN 1; 4HDU
CMP CHAIN: A; 4HDU
CMP SYNONYM: ATL1; 4HDU
CMP ENGINEERED: YES; 4HDU
CMP MOL_ID: 2; 4HDU
CMP MOLECULE: 5'-D(*GP*CP*CP*AP*TP*GP*(2PR)P*CP*TP*AP*GP*TP*A)-3 4HDU
CMP CHAIN: B; 4HDU
CMP ENGINEERED: YES; 4HDU
CMP MOL_ID: 3; 4HDU
CMP MOLECULE: 5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'; 4HDU
CMP CHAIN: C; 4HDU
CMP ENGINEERED: YES 4HDU
SRC MOL_ID: 1; 4HDU
SRC ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; 4HDU
SRC ORGANISM_COMMON: FISSION YEAST; 4HDU
SRC ORGANISM_TAXID: 4896; 4HDU
SRC GENE: ATL1, SPAC1250.04C; 4HDU
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4HDU
SRC EXPRESSION_SYSTEM_TAXID: 562; 4HDU
SRC MOL_ID: 2; 4HDU
SRC SYNTHETIC: YES; 4HDU
SRC MOL_ID: 3; 4HDU
SRC SYNTHETIC: YES 4HDU
AUT J.L.TUBBS,J.A.TAINER 4HDU
REM 4HDU
REM -------------------- Secondary structure summary ------------------- 4HDU
REM 4HDU
CHN /data/npidb/pdb/pdb_new/all/pdb4hdu.pdb A 4HDU
REM 4HDU
REM . . . . . 4HDU
SEQ 1 MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHP 50 4HDU
STR HHHHHHHHHHHHHH TTTTBEEHHHHHHHH TTTHHHHHHHHHHH TT 4HDU
REM 4HDU
REM . . . . . 4HDU
SEQ 51 ETHVPWHRVINSRGTISKRDISAGEQRQKDRLEEEGVEIYQTSLGEYKLN 100 4HDU
STR TT TTTTEETTTTB TTTHHHHHHHHHHHHHH EEEETTTEEEE 4HDU
REM 4HDU
REM 4HDU
SEQ 101 LPEYMWKP 108 4HDU
STR HHHHB 4HDU
REM 4HDU
REM 4HDU
REM 4HDU
LOC AlphaHelix MET 3 A GLU 16 A 4HDU
LOC AlphaHelix TYR 25 A VAL 32 A 4HDU
LOC AlphaHelix TYR 37 A HIS 47 A 4HDU
LOC AlphaHelix SER 72 A GLU 85 A 4HDU
LOC AlphaHelix LEU 101 A TYR 104 A 4HDU
LOC Strand SER 23 A THR 24 A 4HDU
LOC Strand VAL 59 A ILE 60 A 4HDU
LOC Strand ILE 89 A THR 92 A 4HDU
LOC Strand GLU 96 A LEU 99 A 4HDU
LOC TurnII PRO 18 A LYS 21 A 4HDU
LOC TurnI MET 34 A TYR 37 A 4HDU
LOC TurnI HIS 49 A THR 52 A 4HDU
LOC TurnI PRO 55 A ARG 58 A 4HDU
LOC TurnI TRP 56 A VAL 59 A 4HDU
LOC TurnI ASN 61 A GLY 64 A 4HDU
LOC TurnIV ARG 69 A SER 72 A 4HDU
LOC TurnIV THR 92 A GLY 95 A 4HDU
LOC TurnIV SER 93 A GLU 96 A 4HDU
REM 4HDU
REM --------------- Detailed secondary structure assignment------------- 4HDU
REM 4HDU
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4HDU
ASG MET A 1 1 C Coil 360.00 116.73 103.0 4HDU
ASG ARG A 2 2 C Coil -65.47 148.92 149.0 4HDU
ASG MET A 3 3 H AlphaHelix -55.51 -39.76 84.7 4HDU
ASG ASP A 4 4 H AlphaHelix -61.97 -38.08 85.0 4HDU
ASG GLU A 5 5 H AlphaHelix -62.51 -46.84 69.2 4HDU
ASG PHE A 6 6 H AlphaHelix -55.56 -59.28 0.0 4HDU
ASG TYR A 7 7 H AlphaHelix -49.57 -39.86 46.9 4HDU
ASG THR A 8 8 H AlphaHelix -68.54 -45.62 77.0 4HDU
ASG LYS A 9 9 H AlphaHelix -59.68 -50.10 92.8 4HDU
ASG VAL A 10 10 H AlphaHelix -50.77 -48.66 0.0 4HDU
ASG TYR A 11 11 H AlphaHelix -62.12 -42.78 45.7 4HDU
ASG ASP A 12 12 H AlphaHelix -59.16 -46.06 91.5 4HDU
ASG ALA A 13 13 H AlphaHelix -57.67 -57.48 1.2 4HDU
ASG VAL A 14 14 H AlphaHelix -52.50 -41.40 0.0 4HDU
ASG CYS A 15 15 H AlphaHelix -59.65 -22.25 71.8 4HDU
ASG GLU A 16 16 H AlphaHelix -76.51 -20.57 93.4 4HDU
ASG ILE A 17 17 C Coil -61.18 113.60 1.9 4HDU
ASG PRO A 18 18 T Turn -54.31 155.03 52.8 4HDU
ASG TYR A 19 19 T Turn -55.05 138.86 159.3 4HDU
ASG GLY A 20 20 T Turn 67.13 11.22 11.3 4HDU
ASG LYS A 21 21 T Turn -107.77 172.55 67.5 4HDU
ASG VAL A 22 22 B Bridge -143.36 148.13 0.0 4HDU
ASG SER A 23 23 E Strand -136.13 -174.40 0.0 4HDU
ASG THR A 24 24 E Strand -125.37 146.35 9.4 4HDU
ASG TYR A 25 25 H AlphaHelix -48.59 -53.26 41.3 4HDU
ASG GLY A 26 26 H AlphaHelix -62.15 -36.56 12.8 4HDU
ASG GLU A 27 27 H AlphaHelix -67.30 -45.54 57.3 4HDU
ASG ILE A 28 28 H AlphaHelix -62.40 -46.69 0.6 4HDU
ASG ALA A 29 29 H AlphaHelix -52.57 -54.66 0.0 4HDU
ASG ARG A 30 30 H AlphaHelix -55.94 -49.48 127.7 4HDU
ASG TYR A 31 31 H AlphaHelix -49.53 -34.86 94.9 4HDU
ASG VAL A 32 32 H AlphaHelix -97.97 16.17 17.9 4HDU
ASG GLY A 33 33 C Coil 77.97 22.87 47.5 4HDU
ASG MET A 34 34 T Turn -134.23 68.73 47.3 4HDU
ASG PRO A 35 35 T Turn -58.26 -33.42 86.1 4HDU
ASG SER A 36 36 T Turn -87.46 -4.01 94.1 4HDU
ASG TYR A 37 37 H AlphaHelix -94.07 30.35 82.8 4HDU
ASG ALA A 38 38 H AlphaHelix -59.87 -44.35 30.6 4HDU
ASG ARG A 39 39 H AlphaHelix -60.71 -38.19 209.3 4HDU
ASG GLN A 40 40 H AlphaHelix -71.33 -26.50 44.7 4HDU
ASG VAL A 41 41 H AlphaHelix -63.79 -35.34 0.0 4HDU
ASG GLY A 42 42 H AlphaHelix -59.27 -56.17 23.3 4HDU
ASG GLN A 43 43 H AlphaHelix -47.43 -52.17 79.7 4HDU
ASG ALA A 44 44 H AlphaHelix -50.46 -47.40 0.0 4HDU
ASG MET A 45 45 H AlphaHelix -60.77 -46.94 19.6 4HDU
ASG LYS A 46 46 H AlphaHelix -64.03 -35.82 154.2 4HDU
ASG HIS A 47 47 H AlphaHelix -70.72 -20.17 95.7 4HDU
ASG LEU A 48 48 C Coil -57.29 149.87 34.4 4HDU
ASG HIS A 49 49 T Turn -88.26 150.79 131.5 4HDU
ASG PRO A 50 50 T Turn -54.76 -26.26 109.5 4HDU
ASG GLU A 51 51 T Turn -76.95 -23.81 138.6 4HDU
ASG THR A 52 52 T Turn -45.12 141.81 32.8 4HDU
ASG HIS A 53 53 C Coil -87.41 -0.41 188.2 4HDU
ASG VAL A 54 54 C Coil -69.58 126.33 16.5 4HDU
ASG PRO A 55 55 T Turn -73.05 55.85 6.3 4HDU
ASG TRP A 56 56 T Turn -53.14 -19.37 34.5 4HDU
ASG HIS A 57 57 T Turn -79.45 -13.85 11.6 4HDU
ASG ARG A 58 58 T Turn -91.29 19.98 31.5 4HDU
ASG VAL A 59 59 E Strand -126.01 112.65 0.8 4HDU
ASG ILE A 60 60 E Strand -116.10 -171.06 0.0 4HDU
ASG ASN A 61 61 T Turn -86.47 171.51 11.2 4HDU
ASG SER A 62 62 T Turn -63.93 -25.13 89.6 4HDU
ASG ARG A 63 63 T Turn -82.04 9.76 142.3 4HDU
ASG GLY A 64 64 T Turn 69.21 14.92 0.4 4HDU
ASG THR A 65 65 B Bridge -108.62 165.85 1.0 4HDU
ASG ILE A 66 66 C Coil -87.23 124.78 1.8 4HDU
ASG SER A 67 67 C Coil -70.61 140.17 29.6 4HDU
ASG LYS A 68 68 C Coil -80.77 139.24 130.4 4HDU
ASG ARG A 69 69 T Turn -135.31 173.99 75.4 4HDU
ASG ASP A 70 70 T Turn -57.51 -48.48 148.3 4HDU
ASG ILE A 71 71 T Turn -85.71 89.14 100.3 4HDU
ASG SER A 72 72 H AlphaHelix -56.85 -26.86 76.4 4HDU
ASG ALA A 73 73 H AlphaHelix -53.49 -41.71 50.5 4HDU
ASG GLY A 74 74 H AlphaHelix -61.64 -51.48 8.0 4HDU
ASG GLU A 75 75 H AlphaHelix -42.76 -45.03 18.4 4HDU
ASG GLN A 76 76 H AlphaHelix -72.19 -43.28 77.2 4HDU
ASG ARG A 77 77 H AlphaHelix -65.94 -38.97 108.6 4HDU
ASG GLN A 78 78 H AlphaHelix -58.59 -49.78 0.4 4HDU
ASG LYS A 79 79 H AlphaHelix -53.63 -48.62 41.1 4HDU
ASG ASP A 80 80 H AlphaHelix -62.66 -51.31 66.0 4HDU
ASG ARG A 81 81 H AlphaHelix -57.16 -41.16 75.0 4HDU
ASG LEU A 82 82 H AlphaHelix -65.24 -39.11 0.6 4HDU
ASG GLU A 83 83 H AlphaHelix -67.76 -36.86 86.3 4HDU
ASG GLU A 84 84 H AlphaHelix -62.28 -26.91 146.0 4HDU
ASG GLU A 85 85 H AlphaHelix -81.32 5.39 26.6 4HDU
ASG GLY A 86 86 C Coil 71.58 41.20 59.9 4HDU
ASG VAL A 87 87 C Coil -109.11 112.07 2.1 4HDU
ASG GLU A 88 88 C Coil -61.99 114.99 146.6 4HDU
ASG ILE A 89 89 E Strand -126.12 115.87 22.8 4HDU
ASG TYR A 90 90 E Strand -98.16 164.44 126.3 4HDU
ASG GLN A 91 91 E Strand -117.20 108.39 124.0 4HDU
ASG THR A 92 92 E Strand -54.76 146.81 46.2 4HDU
ASG SER A 93 93 T Turn -66.18 144.52 100.8 4HDU
ASG LEU A 94 94 T Turn 70.61 50.47 170.5 4HDU
ASG GLY A 95 95 T Turn -13.88 78.22 31.5 4HDU
ASG GLU A 96 96 E Strand -109.96 139.33 41.1 4HDU
ASG TYR A 97 97 E Strand -83.24 133.85 22.4 4HDU
ASG LYS A 98 98 E Strand -137.56 162.48 60.5 4HDU
ASG LEU A 99 99 E Strand -158.65 161.39 5.0 4HDU
ASG ASN A 100 100 C Coil -71.09 97.03 80.9 4HDU
ASG LEU A 101 101 H AlphaHelix -60.70 -48.80 35.9 4HDU
ASG PRO A 102 102 H AlphaHelix -51.51 -39.85 97.0 4HDU
ASG GLU A 103 103 H AlphaHelix -69.51 -57.99 103.2 4HDU
ASG TYR A 104 104 H AlphaHelix -77.58 -15.42 17.8 4HDU
ASG MET A 105 105 B Bridge -53.60 140.52 31.5 4HDU
ASG TRP A 106 106 C Coil -99.08 124.70 33.0 4HDU
ASG LYS A 107 107 C Coil -123.96 105.68 158.0 4HDU
ASG PRO A 108 108 C Coil -50.89 360.00 108.7 4HDU