Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/4euw.std.txt Дата изменения: Mon Sep 17 15:43:15 2012 Дата индексирования: Tue Oct 2 12:46:40 2012 Кодировка:

REM -------------------------------------------------------------------- 4EUW
REM 4EUW
REM STRIDE: Knowledge-based secondary structure assignment 4EUW
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4EUW
REM 4EUW
REM Residue accessible surface area calculation 4EUW
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4EUW
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4EUW
REM 4EUW
REM ------------------------ General information ----------------------- 4EUW
REM 4EUW
HDR TRANSCRIPTION/DNA 25-APR-12 4EUW 4EUW
CMP MOL_ID: 1; 4EUW
CMP MOLECULE: TRANSCRIPTION FACTOR SOX-9; 4EUW
CMP CHAIN: A; 4EUW
CMP FRAGMENT: HMG BOX CONTAINING RESIDUES 98-181; 4EUW
CMP ENGINEERED: YES; 4EUW
CMP MOL_ID: 2; 4EUW
CMP MOLECULE: DNA (5'-D(*CP*TP*CP*TP*TP*TP*GP*AP*GP*AP*AP*G)-3') 4EUW
CMP CHAIN: B; 4EUW
CMP ENGINEERED: YES; 4EUW
CMP MOL_ID: 3; 4EUW
CMP MOLECULE: DNA (5'-D(*CP*TP*TP*CP*TP*CP*AP*AP*AP*GP*AP*G)-3') 4EUW
CMP CHAIN: C; 4EUW
CMP ENGINEERED: YES 4EUW
SRC MOL_ID: 1; 4EUW
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 4EUW
SRC ORGANISM_COMMON: HUMAN; 4EUW
SRC ORGANISM_TAXID: 9606; 4EUW
SRC GENE: SGT82680, SOX9; 4EUW
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4EUW
SRC EXPRESSION_SYSTEM_TAXID: 469008; 4EUW
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PHAGER20080807; 4EUW
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 4EUW
SRC EXPRESSION_SYSTEM_PLASMID: PRSF2EK6TEVLIC; 4EUW
SRC MOL_ID: 2; 4EUW
SRC SYNTHETIC: YES; 4EUW
SRC OTHER_DETAILS: SEQUENCE MATCHING THE SOX-9 BINDING SITE FROM 4EUW
SRC ANTI-MULLERIAN HORMONE (AMH) PROMOTER, TOP STRAND; 4EUW
SRC MOL_ID: 3; 4EUW
SRC SYNTHETIC: YES; 4EUW
SRC OTHER_DETAILS: SEQUENCE MATCHING THE SOX-9 BINDING SITE FROM 4EUW
SRC ANTI-MULLERIAN HORMONE (AMH) PROMOTER, BOTTOM STRAND 4EUW
AUT JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG),PARTNERSHIP FOR S 4EUW
AUT BIOLOGY (STEMCELL) 4EUW
REM 4EUW
REM -------------------- Secondary structure summary ------------------- 4EUW
REM 4EUW
CHN /data/npidb/pdb/pdb_new/all/pdb4euw.pdb A 4EUW
REM 4EUW
REM . . . . . 4EUW
SEQ 1 PHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKR 50 4EUW
STR HHHHHHHHHHHHHHHHTTTT HHHHHHHHHHHHH HHHHH 4EUW
REM 4EUW
REM . . 4EUW
SEQ 51 PFVEEAERLRVQHKKDHPDYKY 72 4EUW
STR HHHHHHHHHHHHHHHHTTTT 4EUW
REM 4EUW
REM 4EUW
REM 4EUW
LOC AlphaHelix ALA 111 A GLN 126 A 4EUW
LOC AlphaHelix ASN 132 A ARG 144 A 4EUW
LOC AlphaHelix GLU 148 A ASP 168 A 4EUW
LOC TurnI TYR 127 A LEU 130 A 4EUW
LOC TurnIV HIS 169 A TYR 172 A 4EUW
REM 4EUW
REM --------------- Detailed secondary structure assignment------------- 4EUW
REM 4EUW
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4EUW
ASG PRO A 103 1 C Coil 360.00 138.37 187.9 4EUW
ASG HIS A 104 2 C Coil -149.06 148.16 144.9 4EUW
ASG VAL A 105 3 C Coil -99.29 120.41 51.1 4EUW
ASG LYS A 106 4 C Coil -73.80 153.52 170.0 4EUW
ASG ARG A 107 5 C Coil -70.06 145.27 137.9 4EUW
ASG PRO A 108 6 C Coil -77.77 156.61 35.5 4EUW
ASG MET A 109 7 C Coil -77.97 132.02 69.3 4EUW
ASG ASN A 110 8 C Coil -77.92 167.38 94.5 4EUW
ASG ALA A 111 9 H AlphaHelix -53.97 -35.14 17.7 4EUW
ASG PHE A 112 10 H AlphaHelix -65.58 -49.45 44.5 4EUW
ASG MET A 113 11 H AlphaHelix -68.29 -23.04 92.9 4EUW
ASG VAL A 114 12 H AlphaHelix -75.37 -51.93 25.5 4EUW
ASG TRP A 115 13 H AlphaHelix -65.46 -38.10 32.5 4EUW
ASG ALA A 116 14 H AlphaHelix -66.36 -29.31 0.8 4EUW
ASG GLN A 117 15 H AlphaHelix -60.40 -44.29 105.9 4EUW
ASG ALA A 118 16 H AlphaHelix -78.87 -46.49 54.3 4EUW
ASG ALA A 119 17 H AlphaHelix -51.52 -47.87 21.6 4EUW
ASG ARG A 120 18 H AlphaHelix -55.33 -54.73 53.9 4EUW
ASG ARG A 121 19 H AlphaHelix -66.75 -32.02 125.7 4EUW
ASG LYS A 122 20 H AlphaHelix -56.48 -46.19 57.2 4EUW
ASG LEU A 123 21 H AlphaHelix -69.28 -51.94 45.3 4EUW
ASG ALA A 124 22 H AlphaHelix -51.04 -35.54 28.0 4EUW
ASG ASP A 125 23 H AlphaHelix -66.72 -31.16 123.1 4EUW
ASG GLN A 126 24 H AlphaHelix -82.45 -43.18 128.3 4EUW
ASG TYR A 127 25 T Turn -121.06 80.72 112.9 4EUW
ASG PRO A 128 26 T Turn -75.52 -11.20 92.6 4EUW
ASG HIS A 129 27 T Turn -96.25 -1.64 178.0 4EUW
ASG LEU A 130 28 T Turn -77.83 127.68 85.9 4EUW
ASG HIS A 131 29 C Coil -65.69 142.12 136.1 4EUW
ASG ASN A 132 30 H AlphaHelix -69.80 -25.36 89.6 4EUW
ASG ALA A 133 31 H AlphaHelix -59.87 -40.65 56.0 4EUW
ASG GLU A 134 32 H AlphaHelix -74.83 -36.73 111.6 4EUW
ASG LEU A 135 33 H AlphaHelix -60.53 -38.19 4.2 4EUW
ASG SER A 136 34 H AlphaHelix -58.63 -39.98 50.3 4EUW
ASG LYS A 137 35 H AlphaHelix -68.03 -36.99 141.9 4EUW
ASG THR A 138 36 H AlphaHelix -67.33 -48.29 63.6 4EUW
ASG LEU A 139 37 H AlphaHelix -58.85 -41.81 0.4 4EUW
ASG GLY A 140 38 H AlphaHelix -62.43 -35.55 35.0 4EUW
ASG LYS A 141 39 H AlphaHelix -71.18 -49.88 156.6 4EUW
ASG LEU A 142 40 H AlphaHelix -57.78 -48.09 75.4 4EUW
ASG TRP A 143 41 H AlphaHelix -57.92 -42.38 37.1 4EUW
ASG ARG A 144 42 H AlphaHelix -76.27 7.81 74.6 4EUW
ASG LEU A 145 43 C Coil -112.73 -1.01 134.3 4EUW
ASG LEU A 146 44 C Coil -83.71 154.56 42.1 4EUW
ASG ASN A 147 45 C Coil -77.72 170.19 94.1 4EUW
ASG GLU A 148 46 H AlphaHelix -62.88 -43.28 86.0 4EUW
ASG SER A 149 47 H AlphaHelix -62.04 -38.89 76.0 4EUW
ASG GLU A 150 48 H AlphaHelix -68.11 -43.42 90.5 4EUW
ASG LYS A 151 49 H AlphaHelix -75.30 -32.90 51.5 4EUW
ASG ARG A 152 50 H AlphaHelix -37.47 -53.97 85.9 4EUW
ASG PRO A 153 51 H AlphaHelix -54.93 -33.93 66.2 4EUW
ASG PHE A 154 52 H AlphaHelix -80.85 -30.38 58.7 4EUW
ASG VAL A 155 53 H AlphaHelix -70.81 -48.88 70.3 4EUW
ASG GLU A 156 54 H AlphaHelix -54.36 -41.75 128.8 4EUW
ASG GLU A 157 55 H AlphaHelix -74.65 -46.32 70.3 4EUW
ASG ALA A 158 56 H AlphaHelix -53.65 -39.95 13.1 4EUW
ASG GLU A 159 57 H AlphaHelix -65.72 -55.03 86.8 4EUW
ASG ARG A 160 58 H AlphaHelix -49.11 -45.78 128.6 4EUW
ASG LEU A 161 59 H AlphaHelix -62.08 -34.08 31.2 4EUW
ASG ARG A 162 60 H AlphaHelix -81.13 -47.47 127.8 4EUW
ASG VAL A 163 61 H AlphaHelix -60.74 -44.18 78.1 4EUW
ASG GLN A 164 62 H AlphaHelix -58.28 -48.13 92.1 4EUW
ASG HIS A 165 63 H AlphaHelix -67.36 -34.74 24.1 4EUW
ASG LYS A 166 64 H AlphaHelix -65.91 -36.43 56.5 4EUW
ASG LYS A 167 65 H AlphaHelix -64.43 -55.65 70.8 4EUW
ASG ASP A 168 66 H AlphaHelix -61.78 -40.97 90.4 4EUW
ASG HIS A 169 67 T Turn -123.12 81.25 63.6 4EUW
ASG PRO A 170 68 T Turn -77.16 -16.02 98.1 4EUW
ASG ASP A 171 69 T Turn -126.76 54.68 155.5 4EUW
ASG TYR A 172 70 T Turn -76.74 120.56 54.6 4EUW
ASG LYS A 173 71 C Coil -81.87 119.69 85.3 4EUW
ASG TYR A 174 72 C Coil -82.61 360.00 189.6 4EUW