Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/4n2s.std.txt Дата изменения: Mon Jan 13 19:35:41 2014 Дата индексирования: Fri Feb 28 14:45:52 2014 Кодировка:

REM -------------------------------------------------------------------- 4N2S
REM 4N2S
REM STRIDE: Knowledge-based secondary structure assignment 4N2S
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4N2S
REM 4N2S
REM Residue accessible surface area calculation 4N2S
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4N2S
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4N2S
REM 4N2S
REM ------------------------ General information ----------------------- 4N2S
REM 4N2S
HDR SPLICING/RNA 06-OCT-13 4N2S 4N2S
CMP MOL_ID: 1; 4N2S
CMP MOLECULE: THA8 RNA BINDING PROTEIN; 4N2S
CMP CHAIN: A; 4N2S
CMP ENGINEERED: YES; 4N2S
CMP MOL_ID: 2; 4N2S
CMP MOLECULE: ZM1A-6 RNA; 4N2S
CMP CHAIN: B; 4N2S
CMP ENGINEERED: YES 4N2S
SRC MOL_ID: 1; 4N2S
SRC ORGANISM_SCIENTIFIC: BRACHYPODIUM DISTACHYON; 4N2S
SRC ORGANISM_COMMON: PURPLE FALSE BROME; 4N2S
SRC ORGANISM_TAXID: 15368; 4N2S
SRC GENE: BRADI2G00245, BRADI2G00270; 4N2S
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4N2S
SRC EXPRESSION_SYSTEM_TAXID: 511693; 4N2S
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 4N2S
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 4N2S
SRC EXPRESSION_SYSTEM_PLASMID: PET24A; 4N2S
SRC MOL_ID: 2; 4N2S
SRC SYNTHETIC: YES; 4N2S
SRC OTHER_DETAILS: ZM1A-6 RNA SEQUENCE IS CHEMICALLY SYNTHESIZED 4N2S
AUT J.KE,R.Z.CHEN,T.BAN,X.E.ZHOU,X.GU,J.S.BRUNZELLE,J.K.ZHU,K.MEL 4N2S
AUT H.E.XU 4N2S
REM 4N2S
REM -------------------- Secondary structure summary ------------------- 4N2S
REM 4N2S
CHN /data/npidb/pdb/pdb_new/all/pdb4n2s.pdb A 4N2S
REM 4N2S
REM . . . . . 4N2S
SEQ 1 SLSTEAIHAVQALKRLTAADRSPPAATAAASAALGRLLRADLLAAMAELQ 50 4N2S
STR HHHHHHHHHHHHHHHH HHHHHHHHHHHHTTT HHHHHHHHHHHH 4N2S
REM 4N2S
REM . . . . . 4N2S
SEQ 51 RQGHWSLALAALHVARAEPWYRPDPELYATFVSSSPSNDPAAAAAVDALV 100 4N2S
STR HHTTHHHHHHHHHHHHHTTTT HHHHHHHHHH TTTTHHHHHHHHHHH 4N2S
REM 4N2S
REM . . . . . 4N2S
SEQ 101 EAFIEEKERGAAGGSSEGVWVGEDVYKLTRLVRALVAKGRARAAWRVYEA 150 4N2S
STR HHHHHHHHTTTTTTTTTTTTTTT HHHHHHHHHHHHHH HHHHHHHHHH 4N2S
REM 4N2S
REM . . . . 4N2S
SEQ 151 AVRKGGCEVDEYMYRVMAKGMKRLGLDEEAAEVEADLADWEARHLPD 197 4N2S
STR HHTTTT HHHHHHHHHHHHH TTHHHHHHHHHHHHHHHHHH 4N2S
REM 4N2S
REM 4N2S
REM 4N2S
LOC AlphaHelix THR 47 A ALA 62 A 4N2S
LOC AlphaHelix PRO 66 A LEU 77 A 4N2S
LOC AlphaHelix ARG 82 A GLN 95 A 4N2S
LOC AlphaHelix TRP 98 A ALA 110 A 4N2S
LOC AlphaHelix PRO 118 A SER 127 A 4N2S
LOC AlphaHelix PRO 133 A GLU 151 A 4N2S
LOC AlphaHelix VAL 168 A LYS 181 A 4N2S
LOC AlphaHelix ALA 184 A VAL 195 A 4N2S
LOC AlphaHelix GLU 204 A ARG 216 A 4N2S
LOC AlphaHelix ASP 220 A HIS 237 A 4N2S
LOC TurnIV LEU 77 A LEU 80 A 4N2S
LOC TurnI GLU 111 A TYR 114 A 4N2S
LOC TurnIV PRO 129 A ASP 132 A 4N2S
LOC TurnIV ARG 152 A ALA 155 A 4N2S
LOC TurnIV ALA 155 A SER 158 A 4N2S
LOC TurnIV SER 158 A GLY 161 A 4N2S
LOC TurnI GLY 161 A VAL 164 A 4N2S
LOC TurnII TRP 163 A GLU 166 A 4N2S
LOC TurnI VAL 195 A GLY 198 A 4N2S
LOC TurnI ARG 196 A GLY 199 A 4N2S
LOC GammaInv GLY 96 A TRP 98 A 4N2S
LOC GammaInv GLY 218 A ASP 220 A 4N2S
REM 4N2S
REM --------------- Detailed secondary structure assignment------------- 4N2S
REM 4N2S
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4N2S
ASG SER A 44 1 C Coil 360.00 174.41 175.9 4N2S
ASG LEU A 45 2 C Coil -99.30 135.10 39.0 4N2S
ASG SER A 46 3 C Coil -75.87 155.53 43.9 4N2S
ASG THR A 47 4 H AlphaHelix -55.45 -20.68 97.4 4N2S
ASG GLU A 48 5 H AlphaHelix -74.09 -30.99 115.6 4N2S
ASG ALA A 49 6 H AlphaHelix -84.16 -51.46 0.0 4N2S
ASG ILE A 50 7 H AlphaHelix -50.46 -42.41 55.7 4N2S
ASG HIS A 51 8 H AlphaHelix -73.04 -26.28 96.1 4N2S
ASG ALA A 52 9 H AlphaHelix -68.82 -40.36 7.8 4N2S
ASG VAL A 53 10 H AlphaHelix -68.42 -45.70 4.6 4N2S
ASG GLN A 54 11 H AlphaHelix -52.83 -52.63 75.8 4N2S
ASG ALA A 55 12 H AlphaHelix -54.28 -60.74 23.9 4N2S
ASG LEU A 56 13 H AlphaHelix -45.75 -37.26 0.0 4N2S
ASG LYS A 57 14 H AlphaHelix -74.63 -48.95 71.5 4N2S
ASG ARG A 58 15 H AlphaHelix -56.49 -38.78 149.8 4N2S
ASG LEU A 59 16 H AlphaHelix -66.13 -55.94 90.4 4N2S
ASG THR A 60 17 H AlphaHelix -67.52 -16.16 8.3 4N2S
ASG ALA A 61 18 H AlphaHelix -51.55 -43.11 48.5 4N2S
ASG ALA A 62 19 H AlphaHelix -79.73 -37.56 101.2 4N2S
ASG ASP A 63 20 C Coil -129.08 118.08 79.1 4N2S
ASG ARG A 64 21 C Coil -105.29 -7.82 190.4 4N2S
ASG SER A 65 22 C Coil -55.21 149.31 48.0 4N2S
ASG PRO A 66 23 H AlphaHelix -55.20 -33.08 104.7 4N2S
ASG PRO A 67 24 H AlphaHelix -71.15 -36.55 92.4 4N2S
ASG ALA A 68 25 H AlphaHelix -77.43 -17.70 23.9 4N2S
ASG ALA A 69 26 H AlphaHelix -72.75 -61.97 10.8 4N2S
ASG THR A 70 27 H AlphaHelix -59.09 -17.21 69.2 4N2S
ASG ALA A 71 28 H AlphaHelix -78.82 -37.42 53.8 4N2S
ASG ALA A 72 29 H AlphaHelix -81.85 -34.72 8.1 4N2S
ASG ALA A 73 30 H AlphaHelix -63.17 -49.66 0.0 4N2S
ASG SER A 74 31 H AlphaHelix -63.73 -38.29 60.6 4N2S
ASG ALA A 75 32 H AlphaHelix -69.42 -45.04 73.7 4N2S
ASG ALA A 76 33 H AlphaHelix -80.25 -25.22 20.3 4N2S
ASG LEU A 77 34 H AlphaHelix -122.94 26.89 0.2 4N2S
ASG GLY A 78 35 T Turn -58.12 -48.75 27.8 4N2S
ASG ARG A 79 36 T Turn -131.32 33.50 236.5 4N2S
ASG LEU A 80 37 T Turn -72.41 138.64 19.3 4N2S
ASG LEU A 81 38 C Coil -52.88 138.62 119.3 4N2S
ASG ARG A 82 39 H AlphaHelix -33.40 -49.22 115.0 4N2S
ASG ALA A 83 40 H AlphaHelix -59.43 -50.05 67.8 4N2S
ASG ASP A 84 41 H AlphaHelix -66.58 -40.85 18.2 4N2S
ASG LEU A 85 42 H AlphaHelix -60.78 -55.20 0.0 4N2S
ASG LEU A 86 43 H AlphaHelix -52.17 -42.54 43.3 4N2S
ASG ALA A 87 44 H AlphaHelix -63.80 -52.25 28.8 4N2S
ASG ALA A 88 45 H AlphaHelix -54.56 -36.12 0.0 4N2S
ASG MET A 89 46 H AlphaHelix -62.44 -50.85 1.4 4N2S
ASG ALA A 90 47 H AlphaHelix -68.85 -25.80 47.4 4N2S
ASG GLU A 91 48 H AlphaHelix -71.15 -37.67 31.2 4N2S
ASG LEU A 92 49 H AlphaHelix -67.13 -43.51 0.4 4N2S
ASG GLN A 93 50 H AlphaHelix -57.84 -49.10 19.1 4N2S
ASG ARG A 94 51 H AlphaHelix -54.80 -38.78 181.2 4N2S
ASG GLN A 95 52 H AlphaHelix -78.00 -10.55 66.7 4N2S
ASG GLY A 96 53 T Turn 95.82 -4.80 54.0 4N2S
ASG HIS A 97 54 T Turn -78.14 68.60 70.1 4N2S
ASG TRP A 98 55 H AlphaHelix -64.04 -43.72 20.5 4N2S
ASG SER A 99 56 H AlphaHelix -61.12 -38.54 81.6 4N2S
ASG LEU A 100 57 H AlphaHelix -72.24 -27.52 13.2 4N2S
ASG ALA A 101 58 H AlphaHelix -69.63 -40.50 0.0 4N2S
ASG LEU A 102 59 H AlphaHelix -62.23 -36.53 27.5 4N2S
ASG ALA A 103 60 H AlphaHelix -63.34 -43.68 4.1 4N2S
ASG ALA A 104 61 H AlphaHelix -68.82 -17.05 0.0 4N2S
ASG LEU A 105 62 H AlphaHelix -82.40 -32.08 0.0 4N2S
ASG HIS A 106 63 H AlphaHelix -74.98 -30.80 96.1 4N2S
ASG VAL A 107 64 H AlphaHelix -72.24 -40.14 16.2 4N2S
ASG ALA A 108 65 H AlphaHelix -62.70 -38.43 0.2 4N2S
ASG ARG A 109 66 H AlphaHelix -60.90 -36.48 61.8 4N2S
ASG ALA A 110 67 H AlphaHelix -76.96 -8.05 88.0 4N2S
ASG GLU A 111 68 T Turn -77.32 164.15 37.4 4N2S
ASG PRO A 112 69 T Turn -81.10 -32.41 106.7 4N2S
ASG TRP A 113 70 T Turn -82.14 -3.56 54.5 4N2S
ASG TYR A 114 71 T Turn -62.08 134.95 25.0 4N2S
ASG ARG A 115 72 C Coil -140.46 149.43 176.4 4N2S
ASG PRO A 116 73 C Coil -71.11 115.97 30.3 4N2S
ASG ASP A 117 74 C Coil -119.24 124.00 49.5 4N2S
ASG PRO A 118 75 H AlphaHelix -62.04 -33.99 0.8 4N2S
ASG GLU A 119 76 H AlphaHelix -72.07 -44.45 73.2 4N2S
ASG LEU A 120 77 H AlphaHelix -50.59 -50.21 27.0 4N2S
ASG TYR A 121 78 H AlphaHelix -62.80 -46.03 1.6 4N2S
ASG ALA A 122 79 H AlphaHelix -46.68 -43.86 0.2 4N2S
ASG THR A 123 80 H AlphaHelix -54.86 -55.06 37.9 4N2S
ASG PHE A 124 81 H AlphaHelix -52.68 -46.02 0.0 4N2S
ASG VAL A 125 82 H AlphaHelix -60.83 -45.82 0.8 4N2S
ASG SER A 126 83 H AlphaHelix -63.93 -41.66 64.8 4N2S
ASG SER A 127 84 H AlphaHelix -86.96 14.29 35.5 4N2S
ASG SER A 128 85 C Coil -83.37 144.96 8.9 4N2S
ASG PRO A 129 86 T Turn -63.85 123.70 53.1 4N2S
ASG SER A 130 87 T Turn -71.82 156.71 72.3 4N2S
ASG ASN A 131 88 T Turn 58.21 37.45 160.6 4N2S
ASG ASP A 132 89 T Turn -123.16 99.85 72.8 4N2S
ASG PRO A 133 90 H AlphaHelix -54.95 -42.72 110.4 4N2S
ASG ALA A 134 91 H AlphaHelix -58.81 -50.56 79.4 4N2S
ASG ALA A 135 92 H AlphaHelix -64.61 -41.24 6.3 4N2S
ASG ALA A 136 93 H AlphaHelix -53.08 -43.97 20.9 4N2S
ASG ALA A 137 94 H AlphaHelix -63.07 -48.56 56.5 4N2S
ASG ALA A 138 95 H AlphaHelix -54.89 -39.30 27.0 4N2S
ASG VAL A 139 96 H AlphaHelix -61.32 -44.96 1.2 4N2S
ASG ASP A 140 97 H AlphaHelix -68.31 -45.18 35.9 4N2S
ASG ALA A 141 98 H AlphaHelix -60.55 -34.42 59.0 4N2S
ASG LEU A 142 99 H AlphaHelix -63.21 -46.80 13.0 4N2S
ASG VAL A 143 100 H AlphaHelix -63.76 -31.67 1.6 4N2S
ASG GLU A 144 101 H AlphaHelix -67.19 -50.67 63.3 4N2S
ASG ALA A 145 102 H AlphaHelix -51.19 -47.64 24.7 4N2S
ASG PHE A 146 103 H AlphaHelix -55.50 -50.65 0.0 4N2S
ASG ILE A 147 104 H AlphaHelix -66.25 -42.27 2.6 4N2S
ASG GLU A 148 105 H AlphaHelix -57.56 -56.37 87.2 4N2S
ASG GLU A 149 106 H AlphaHelix -53.22 -44.71 14.8 4N2S
ASG LYS A 150 107 H AlphaHelix -60.81 -46.15 37.8 4N2S
ASG GLU A 151 108 H AlphaHelix -86.76 3.36 88.1 4N2S
ASG ARG A 152 109 T Turn -96.36 -18.04 148.4 4N2S
ASG GLY A 153 110 T Turn -63.71 -120.25 54.1 4N2S
ASG ALA A 154 111 T Turn -85.30 27.70 87.5 4N2S
ASG ALA A 155 112 T Turn -109.02 -171.02 24.4 4N2S
ASG GLY A 156 113 T Turn 98.69 -4.05 86.6 4N2S
ASG GLY A 157 114 T Turn 160.00 33.70 74.9 4N2S
ASG SER A 158 115 T Turn -73.46 129.98 39.5 4N2S
ASG SER A 159 116 T Turn -96.05 85.68 128.2 4N2S
ASG GLU A 160 117 T Turn -156.32 120.65 139.8 4N2S
ASG GLY A 161 118 T Turn 92.70 125.84 33.1 4N2S
ASG VAL A 162 119 T Turn -83.93 -29.61 35.5 4N2S
ASG TRP A 163 120 T Turn -88.59 -31.49 4.0 4N2S
ASG VAL A 164 121 T Turn -67.24 134.28 56.7 4N2S
ASG GLY A 165 122 T Turn 94.16 -7.12 78.5 4N2S
ASG GLU A 166 123 T Turn -60.35 151.97 24.4 4N2S
ASG ASP A 167 124 C Coil -75.07 114.37 60.0 4N2S
ASG VAL A 168 125 H AlphaHelix -57.96 -51.69 33.5 4N2S
ASG TYR A 169 126 H AlphaHelix -55.19 -52.59 185.8 4N2S
ASG LYS A 170 127 H AlphaHelix -61.90 -40.79 51.9 4N2S
ASG LEU A 171 128 H AlphaHelix -66.01 -38.48 1.0 4N2S
ASG THR A 172 129 H AlphaHelix -67.20 -29.82 9.4 4N2S
ASG ARG A 173 130 H AlphaHelix -69.91 -41.63 140.0 4N2S
ASG LEU A 174 131 H AlphaHelix -63.69 -47.05 1.0 4N2S
ASG VAL A 175 132 H AlphaHelix -59.86 -56.77 0.2 4N2S
ASG ARG A 176 133 H AlphaHelix -53.79 -40.39 109.1 4N2S
ASG ALA A 177 134 H AlphaHelix -61.55 -45.79 10.4 4N2S
ASG LEU A 178 135 H AlphaHelix -63.59 -45.56 0.0 4N2S
ASG VAL A 179 136 H AlphaHelix -61.37 -28.28 25.7 4N2S
ASG ALA A 180 137 H AlphaHelix -71.16 -50.67 80.9 4N2S
ASG LYS A 181 138 H AlphaHelix -69.04 -3.83 60.4 4N2S
ASG GLY A 182 139 C Coil 75.83 30.12 26.4 4N2S
ASG ARG A 183 140 C Coil -95.07 61.73 72.2 4N2S
ASG ALA A 184 141 H AlphaHelix -42.75 -66.77 10.6 4N2S
ASG ARG A 185 142 H AlphaHelix -47.73 -41.99 132.1 4N2S
ASG ALA A 186 143 H AlphaHelix -68.11 -37.66 2.3 4N2S
ASG ALA A 187 144 H AlphaHelix -70.57 -37.11 0.0 4N2S
ASG TRP A 188 145 H AlphaHelix -65.35 -34.93 7.0 4N2S
ASG ARG A 189 146 H AlphaHelix -66.06 -37.25 108.1 4N2S
ASG VAL A 190 147 H AlphaHelix -67.64 -40.85 0.2 4N2S
ASG TYR A 191 148 H AlphaHelix -64.38 -56.98 2.1 4N2S
ASG GLU A 192 149 H AlphaHelix -54.48 -33.14 61.3 4N2S
ASG ALA A 193 150 H AlphaHelix -85.67 -43.55 11.3 4N2S
ASG ALA A 194 151 H AlphaHelix -87.13 -44.04 0.0 4N2S
ASG VAL A 195 152 H AlphaHelix -89.70 -53.63 15.3 4N2S
ASG ARG A 196 153 T Turn -72.49 -57.09 96.5 4N2S
ASG LYS A 197 154 T Turn -87.38 -43.66 150.3 4N2S
ASG GLY A 198 155 T Turn -64.98 -14.92 17.6 4N2S
ASG GLY A 199 156 T Turn 66.84 25.92 41.1 4N2S
ASG CYS A 200 157 C Coil -82.64 121.66 4.6 4N2S
ASG GLU A 201 158 C Coil -81.07 111.80 150.4 4N2S
ASG VAL A 202 159 C Coil -104.48 -170.73 9.1 4N2S
ASG ASP A 203 160 C Coil -124.04 -175.50 51.7 4N2S
ASG GLU A 204 161 H AlphaHelix -54.37 -40.71 97.3 4N2S
ASG TYR A 205 162 H AlphaHelix -59.98 -43.60 120.9 4N2S
ASG MET A 206 163 H AlphaHelix -61.07 -49.65 1.0 4N2S
ASG TYR A 207 164 H AlphaHelix -59.51 -47.99 9.8 4N2S
ASG ARG A 208 165 H AlphaHelix -54.94 -40.54 116.1 4N2S
ASG VAL A 209 166 H AlphaHelix -63.39 -49.96 10.1 4N2S
ASG MET A 210 167 H AlphaHelix -68.75 -46.90 0.0 4N2S
ASG ALA A 211 168 H AlphaHelix -53.15 -56.21 3.7 4N2S
ASG LYS A 212 169 H AlphaHelix -61.70 -42.28 84.4 4N2S
ASG GLY A 213 170 H AlphaHelix -57.43 -59.95 3.5 4N2S
ASG MET A 214 171 H AlphaHelix -57.36 -44.03 0.0 4N2S
ASG LYS A 215 172 H AlphaHelix -65.13 -30.93 145.8 4N2S
ASG ARG A 216 173 H AlphaHelix -87.15 -4.02 198.0 4N2S
ASG LEU A 217 174 C Coil -121.09 13.00 61.8 4N2S
ASG GLY A 218 175 T Turn 99.39 -29.89 48.8 4N2S
ASG LEU A 219 176 T Turn -74.52 83.44 26.1 4N2S
ASG ASP A 220 177 H AlphaHelix -77.16 -40.43 82.3 4N2S
ASG GLU A 221 178 H AlphaHelix -58.79 -36.46 131.3 4N2S
ASG GLU A 222 179 H AlphaHelix -66.64 -48.69 22.2 4N2S
ASG ALA A 223 180 H AlphaHelix -55.82 -41.40 4.8 4N2S
ASG ALA A 224 181 H AlphaHelix -63.64 -34.49 55.6 4N2S
ASG GLU A 225 182 H AlphaHelix -69.28 -43.81 61.9 4N2S
ASG VAL A 226 183 H AlphaHelix -60.93 -41.63 0.2 4N2S
ASG GLU A 227 184 H AlphaHelix -63.48 -31.82 110.8 4N2S
ASG ALA A 228 185 H AlphaHelix -70.31 -46.66 52.0 4N2S
ASG ASP A 229 186 H AlphaHelix -58.61 -40.10 32.8 4N2S
ASG LEU A 230 187 H AlphaHelix -66.57 -42.96 41.1 4N2S
ASG ALA A 231 188 H AlphaHelix -55.82 -42.86 60.7 4N2S
ASG ASP A 232 189 H AlphaHelix -69.45 -33.54 86.0 4N2S
ASG TRP A 233 190 H AlphaHelix -67.50 -50.07 30.9 4N2S
ASG GLU A 234 191 H AlphaHelix -66.69 -16.10 38.8 4N2S
ASG ALA A 235 192 H AlphaHelix -81.23 -34.10 74.2 4N2S
ASG ARG A 236 193 H AlphaHelix -81.29 -23.90 131.1 4N2S
ASG HIS A 237 194 H AlphaHelix -111.88 -20.74 92.4 4N2S
ASG LEU A 238 195 C Coil -67.88 169.46 100.5 4N2S
ASG PRO A 239 196 C Coil -105.65 -119.27 101.1 4N2S
ASG ASP A 240 197 C Coil 179.31 360.00 215.0 4N2S