Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/4n2q.std.txt Дата изменения: Mon Jan 13 22:22:48 2014 Дата индексирования: Fri Feb 28 14:45:52 2014 Кодировка:

REM -------------------------------------------------------------------- 4N2Q
REM 4N2Q
REM STRIDE: Knowledge-based secondary structure assignment 4N2Q
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4N2Q
REM 4N2Q
REM Residue accessible surface area calculation 4N2Q
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4N2Q
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4N2Q
REM 4N2Q
REM ------------------------ General information ----------------------- 4N2Q
REM 4N2Q
HDR SPLICING/RNA 06-OCT-13 4N2Q 4N2Q
CMP MOL_ID: 1; 4N2Q
CMP MOLECULE: THA8 RNA BINDING PROTEIN; 4N2Q
CMP CHAIN: A; 4N2Q
CMP ENGINEERED: YES; 4N2Q
CMP MOL_ID: 2; 4N2Q
CMP MOLECULE: RNA (5'-R(*AP*AP*GP*AP*AP*GP*AP*AP*AP*UP*UP*GP*G)- 4N2Q
CMP CHAIN: B; 4N2Q
CMP ENGINEERED: YES 4N2Q
SRC MOL_ID: 1; 4N2Q
SRC ORGANISM_SCIENTIFIC: BRACHYPODIUM DISTACHYON; 4N2Q
SRC ORGANISM_COMMON: PURPLE FALSE BROME; 4N2Q
SRC ORGANISM_TAXID: 15368; 4N2Q
SRC GENE: BRADI2G00245, BRADI2G00270; 4N2Q
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4N2Q
SRC EXPRESSION_SYSTEM_TAXID: 511693; 4N2Q
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 4N2Q
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 4N2Q
SRC EXPRESSION_SYSTEM_PLASMID: PET24A; 4N2Q
SRC MOL_ID: 2; 4N2Q
SRC SYNTHETIC: YES; 4N2Q
SRC OTHER_DETAILS: THE RNA SEQUENCE IS CHEMICALLY SYNTHESIZED 4N2Q
AUT J.KE,R.Z.CHEN,T.BAN,X.E.ZHOU,X.GU,J.S.BRUNZELLE,J.K.ZHU,K.MEL 4N2Q
AUT H.E.XU 4N2Q
REM 4N2Q
REM -------------------- Secondary structure summary ------------------- 4N2Q
REM 4N2Q
CHN /data/npidb/pdb/pdb_new/all/pdb4n2q.pdb A 4N2Q
REM 4N2Q
REM . . . . . 4N2Q
SEQ 1 SLSTEAIHAVQALKRLTAADRSPPAATAAASAALGRLLRADLLAAMAELQ 50 4N2Q
STR HHHHHHHHHHHHHHHH HHHHHHHHHHHHTTT HHHHHHHHHHHH 4N2Q
REM 4N2Q
REM . . . . . 4N2Q
SEQ 51 RQGHWSLALAALHVARAEPWYRPDPELYATFVSSSPSNDPAAAAAVDALV 100 4N2Q
STR HHTTHHHHHHHHHHHHHTTTT HHHHHHHHHH TTTTHHHHHHHHHHH 4N2Q
REM 4N2Q
REM . . . . . 4N2Q
SEQ 101 EAFIEEKERGAAGGSSEGVWVGEDVYKLTRLVRALVAKGRARAAWRVYEA 150 4N2Q
STR HHHHHHHHTTT TTTTTTTTTT HHHHHHHHHHHHHH HHHHHHHHHH 4N2Q
REM 4N2Q
REM . . . . 4N2Q
SEQ 151 AVRKGGCEVDEYMYRVMAKGMKRLGLDEEAAEVEADLADWEARHLPDE 198 4N2Q
STR HHTTTT HHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHH 4N2Q
REM 4N2Q
REM 4N2Q
REM 4N2Q
LOC AlphaHelix THR 47 A ALA 62 A 4N2Q
LOC AlphaHelix PRO 66 A LEU 77 A 4N2Q
LOC AlphaHelix ARG 82 A GLN 95 A 4N2Q
LOC AlphaHelix TRP 98 A ALA 110 A 4N2Q
LOC AlphaHelix PRO 118 A SER 127 A 4N2Q
LOC AlphaHelix PRO 133 A GLU 151 A 4N2Q
LOC AlphaHelix VAL 168 A LYS 181 A 4N2Q
LOC AlphaHelix ALA 184 A VAL 195 A 4N2Q
LOC AlphaHelix GLU 204 A LEU 217 A 4N2Q
LOC AlphaHelix ASP 220 A HIS 237 A 4N2Q
LOC TurnIV LEU 77 A LEU 80 A 4N2Q
LOC TurnI GLU 111 A TYR 114 A 4N2Q
LOC TurnIV PRO 129 A ASP 132 A 4N2Q
LOC TurnI GLU 151 A ALA 154 A 4N2Q
LOC TurnIV GLY 157 A GLU 160 A 4N2Q
LOC TurnI GLY 161 A VAL 164 A 4N2Q
LOC TurnI TRP 163 A GLU 166 A 4N2Q
LOC TurnIV VAL 195 A GLY 198 A 4N2Q
LOC TurnIV ARG 196 A GLY 199 A 4N2Q
LOC GammaInv GLY 96 A TRP 98 A 4N2Q
REM 4N2Q
REM --------------- Detailed secondary structure assignment------------- 4N2Q
REM 4N2Q
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4N2Q
ASG SER A 44 1 C Coil 360.00 -169.18 171.3 4N2Q
ASG LEU A 45 2 C Coil -114.12 133.10 39.9 4N2Q
ASG SER A 46 3 C Coil -60.14 146.28 46.4 4N2Q
ASG THR A 47 4 H AlphaHelix -55.36 -27.24 102.0 4N2Q
ASG GLU A 48 5 H AlphaHelix -66.38 -39.21 97.8 4N2Q
ASG ALA A 49 6 H AlphaHelix -75.55 -39.72 0.0 4N2Q
ASG ILE A 50 7 H AlphaHelix -58.80 -47.86 64.7 4N2Q
ASG HIS A 51 8 H AlphaHelix -65.19 -34.59 119.1 4N2Q
ASG ALA A 52 9 H AlphaHelix -64.84 -41.17 7.0 4N2Q
ASG VAL A 53 10 H AlphaHelix -67.48 -50.14 5.6 4N2Q
ASG GLN A 54 11 H AlphaHelix -52.90 -51.81 60.2 4N2Q
ASG ALA A 55 12 H AlphaHelix -51.36 -44.12 35.1 4N2Q
ASG LEU A 56 13 H AlphaHelix -64.91 -45.41 0.0 4N2Q
ASG LYS A 57 14 H AlphaHelix -61.27 -56.04 74.7 4N2Q
ASG ARG A 58 15 H AlphaHelix -53.67 -37.97 164.7 4N2Q
ASG LEU A 59 16 H AlphaHelix -69.80 -50.69 93.0 4N2Q
ASG THR A 60 17 H AlphaHelix -69.54 -11.50 10.4 4N2Q
ASG ALA A 61 18 H AlphaHelix -67.31 -49.66 44.5 4N2Q
ASG ALA A 62 19 H AlphaHelix -64.79 -18.88 99.5 4N2Q
ASG ASP A 63 20 C Coil -149.75 100.37 76.8 4N2Q
ASG ARG A 64 21 C Coil -72.28 -18.57 199.1 4N2Q
ASG SER A 65 22 C Coil -53.85 137.08 43.5 4N2Q
ASG PRO A 66 23 H AlphaHelix -60.83 -31.34 97.3 4N2Q
ASG PRO A 67 24 H AlphaHelix -63.18 -44.02 96.5 4N2Q
ASG ALA A 68 25 H AlphaHelix -74.99 -27.31 35.6 4N2Q
ASG ALA A 69 26 H AlphaHelix -63.39 -36.41 12.0 4N2Q
ASG THR A 70 27 H AlphaHelix -66.53 -48.41 62.3 4N2Q
ASG ALA A 71 28 H AlphaHelix -63.59 -26.98 60.4 4N2Q
ASG ALA A 72 29 H AlphaHelix -76.14 -32.18 10.4 4N2Q
ASG ALA A 73 30 H AlphaHelix -66.54 -50.76 0.6 4N2Q
ASG SER A 74 31 H AlphaHelix -68.08 -14.55 66.8 4N2Q
ASG ALA A 75 32 H AlphaHelix -86.07 -38.43 74.4 4N2Q
ASG ALA A 76 33 H AlphaHelix -93.95 -26.12 19.0 4N2Q
ASG LEU A 77 34 H AlphaHelix -121.11 4.87 0.0 4N2Q
ASG GLY A 78 35 T Turn -52.63 -43.81 25.7 4N2Q
ASG ARG A 79 36 T Turn -133.06 43.41 237.4 4N2Q
ASG LEU A 80 37 T Turn -83.68 153.45 16.5 4N2Q
ASG LEU A 81 38 C Coil -60.59 145.73 120.9 4N2Q
ASG ARG A 82 39 H AlphaHelix -38.66 -51.51 131.7 4N2Q
ASG ALA A 83 40 H AlphaHelix -56.83 -43.94 70.1 4N2Q
ASG ASP A 84 41 H AlphaHelix -66.72 -43.46 17.2 4N2Q
ASG LEU A 85 42 H AlphaHelix -61.54 -45.24 0.0 4N2Q
ASG LEU A 86 43 H AlphaHelix -60.77 -37.55 46.9 4N2Q
ASG ALA A 87 44 H AlphaHelix -72.16 -36.92 22.5 4N2Q
ASG ALA A 88 45 H AlphaHelix -62.16 -48.93 0.0 4N2Q
ASG MET A 89 46 H AlphaHelix -54.97 -51.25 3.6 4N2Q
ASG ALA A 90 47 H AlphaHelix -62.30 -34.02 49.9 4N2Q
ASG GLU A 91 48 H AlphaHelix -69.85 -40.57 34.6 4N2Q
ASG LEU A 92 49 H AlphaHelix -62.55 -42.42 0.0 4N2Q
ASG GLN A 93 50 H AlphaHelix -60.63 -50.21 22.4 4N2Q
ASG ARG A 94 51 H AlphaHelix -55.83 -41.47 173.7 4N2Q
ASG GLN A 95 52 H AlphaHelix -72.70 -24.22 70.4 4N2Q
ASG GLY A 96 53 T Turn 110.17 -1.34 54.6 4N2Q
ASG HIS A 97 54 T Turn -81.20 69.20 68.9 4N2Q
ASG TRP A 98 55 H AlphaHelix -62.97 -46.98 22.0 4N2Q
ASG SER A 99 56 H AlphaHelix -56.57 -34.14 87.5 4N2Q
ASG LEU A 100 57 H AlphaHelix -75.26 -38.13 12.2 4N2Q
ASG ALA A 101 58 H AlphaHelix -58.45 -43.50 0.0 4N2Q
ASG LEU A 102 59 H AlphaHelix -62.44 -37.08 45.2 4N2Q
ASG ALA A 103 60 H AlphaHelix -63.04 -40.85 14.9 4N2Q
ASG ALA A 104 61 H AlphaHelix -64.21 -36.90 0.0 4N2Q
ASG LEU A 105 62 H AlphaHelix -60.73 -42.76 0.8 4N2Q
ASG HIS A 106 63 H AlphaHelix -52.89 -52.74 113.8 4N2Q
ASG VAL A 107 64 H AlphaHelix -57.18 -46.98 14.4 4N2Q
ASG ALA A 108 65 H AlphaHelix -57.77 -40.58 0.4 4N2Q
ASG ARG A 109 66 H AlphaHelix -59.88 -29.28 79.7 4N2Q
ASG ALA A 110 67 H AlphaHelix -77.00 -31.61 87.3 4N2Q
ASG GLU A 111 68 T Turn -52.83 149.29 34.4 4N2Q
ASG PRO A 112 69 T Turn -74.41 -28.69 107.9 4N2Q
ASG TRP A 113 70 T Turn -76.55 -10.53 57.8 4N2Q
ASG TYR A 114 71 T Turn -56.21 137.78 25.3 4N2Q
ASG ARG A 115 72 C Coil -145.00 135.46 165.4 4N2Q
ASG PRO A 116 73 C Coil -57.85 116.47 27.1 4N2Q
ASG ASP A 117 74 C Coil -129.41 124.36 46.3 4N2Q
ASG PRO A 118 75 H AlphaHelix -59.65 -40.65 0.2 4N2Q
ASG GLU A 119 76 H AlphaHelix -59.87 -48.01 65.1 4N2Q
ASG LEU A 120 77 H AlphaHelix -53.45 -47.97 27.8 4N2Q
ASG TYR A 121 78 H AlphaHelix -65.29 -32.44 4.0 4N2Q
ASG ALA A 122 79 H AlphaHelix -65.92 -38.18 0.0 4N2Q
ASG THR A 123 80 H AlphaHelix -64.00 -35.44 36.2 4N2Q
ASG PHE A 124 81 H AlphaHelix -69.66 -33.45 0.2 4N2Q
ASG VAL A 125 82 H AlphaHelix -73.24 -47.64 1.6 4N2Q
ASG SER A 126 83 H AlphaHelix -56.78 -43.75 66.8 4N2Q
ASG SER A 127 84 H AlphaHelix -81.57 -8.40 38.9 4N2Q
ASG SER A 128 85 C Coil -64.54 142.84 5.9 4N2Q
ASG PRO A 129 86 T Turn -65.66 130.42 55.2 4N2Q
ASG SER A 130 87 T Turn -73.06 151.91 72.8 4N2Q
ASG ASN A 131 88 T Turn 56.76 54.47 163.8 4N2Q
ASG ASP A 132 89 T Turn -142.85 89.50 69.6 4N2Q
ASG PRO A 133 90 H AlphaHelix -43.73 -50.78 112.7 4N2Q
ASG ALA A 134 91 H AlphaHelix -56.56 -49.62 72.7 4N2Q
ASG ALA A 135 92 H AlphaHelix -55.69 -49.42 5.1 4N2Q
ASG ALA A 136 93 H AlphaHelix -53.14 -46.06 20.3 4N2Q
ASG ALA A 137 94 H AlphaHelix -62.10 -44.53 57.1 4N2Q
ASG ALA A 138 95 H AlphaHelix -56.69 -37.20 28.0 4N2Q
ASG VAL A 139 96 H AlphaHelix -67.36 -48.94 1.0 4N2Q
ASG ASP A 140 97 H AlphaHelix -56.05 -46.63 38.3 4N2Q
ASG ALA A 141 98 H AlphaHelix -58.36 -40.75 57.9 4N2Q
ASG LEU A 142 99 H AlphaHelix -62.31 -43.74 13.8 4N2Q
ASG VAL A 143 100 H AlphaHelix -62.61 -42.91 3.0 4N2Q
ASG GLU A 144 101 H AlphaHelix -61.73 -36.62 80.2 4N2Q
ASG ALA A 145 102 H AlphaHelix -67.91 -37.28 20.6 4N2Q
ASG PHE A 146 103 H AlphaHelix -67.33 -43.59 0.2 4N2Q
ASG ILE A 147 104 H AlphaHelix -71.62 -31.97 1.6 4N2Q
ASG GLU A 148 105 H AlphaHelix -74.16 -40.60 100.1 4N2Q
ASG GLU A 149 106 H AlphaHelix -62.34 -44.25 19.5 4N2Q
ASG LYS A 150 107 H AlphaHelix -65.04 -50.93 54.5 4N2Q
ASG GLU A 151 108 H AlphaHelix -81.00 -2.54 80.5 4N2Q
ASG ARG A 152 109 T Turn -58.54 -34.42 169.8 4N2Q
ASG GLY A 153 110 T Turn -92.68 41.20 66.2 4N2Q
ASG ALA A 154 111 T Turn -127.33 111.75 60.2 4N2Q
ASG ALA A 155 112 C Coil -145.54 42.32 112.6 4N2Q
ASG GLY A 156 113 C Coil -134.64 139.50 40.0 4N2Q
ASG GLY A 157 114 T Turn -84.13 -0.69 92.9 4N2Q
ASG SER A 158 115 T Turn -61.67 162.40 87.9 4N2Q
ASG SER A 159 116 T Turn -50.37 107.95 126.6 4N2Q
ASG GLU A 160 117 T Turn -68.53 112.38 145.2 4N2Q
ASG GLY A 161 118 T Turn -149.29 28.88 37.0 4N2Q
ASG VAL A 162 119 T Turn -55.98 -30.78 47.9 4N2Q
ASG TRP A 163 120 T Turn -113.35 -19.96 0.4 4N2Q
ASG VAL A 164 121 T Turn -55.09 -40.91 75.5 4N2Q
ASG GLY A 165 122 T Turn -94.93 19.41 73.7 4N2Q
ASG GLU A 166 123 T Turn -74.63 150.24 21.6 4N2Q
ASG ASP A 167 124 C Coil -73.81 112.35 65.7 4N2Q
ASG VAL A 168 125 H AlphaHelix -58.13 -46.52 38.1 4N2Q
ASG TYR A 169 126 H AlphaHelix -62.23 -48.56 184.8 4N2Q
ASG LYS A 170 127 H AlphaHelix -62.11 -39.13 63.0 4N2Q
ASG LEU A 171 128 H AlphaHelix -69.80 -36.20 0.6 4N2Q
ASG THR A 172 129 H AlphaHelix -66.28 -35.72 7.6 4N2Q
ASG ARG A 173 130 H AlphaHelix -66.47 -38.44 129.2 4N2Q
ASG LEU A 174 131 H AlphaHelix -65.58 -44.05 0.8 4N2Q
ASG VAL A 175 132 H AlphaHelix -62.55 -42.92 0.0 4N2Q
ASG ARG A 176 133 H AlphaHelix -59.57 -44.91 132.6 4N2Q
ASG ALA A 177 134 H AlphaHelix -65.05 -45.25 10.9 4N2Q
ASG LEU A 178 135 H AlphaHelix -58.32 -45.00 0.0 4N2Q
ASG VAL A 179 136 H AlphaHelix -62.50 -45.15 18.8 4N2Q
ASG ALA A 180 137 H AlphaHelix -59.53 -26.64 84.3 4N2Q
ASG LYS A 181 138 H AlphaHelix -98.19 11.02 57.2 4N2Q
ASG GLY A 182 139 C Coil 69.57 21.51 29.3 4N2Q
ASG ARG A 183 140 C Coil -92.57 64.98 62.9 4N2Q
ASG ALA A 184 141 H AlphaHelix -53.71 -50.89 11.7 4N2Q
ASG ARG A 185 142 H AlphaHelix -56.30 -52.13 132.5 4N2Q
ASG ALA A 186 143 H AlphaHelix -56.05 -46.59 2.7 4N2Q
ASG ALA A 187 144 H AlphaHelix -55.98 -45.12 0.0 4N2Q
ASG TRP A 188 145 H AlphaHelix -62.77 -40.90 11.2 4N2Q
ASG ARG A 189 146 H AlphaHelix -57.73 -45.68 77.6 4N2Q
ASG VAL A 190 147 H AlphaHelix -62.28 -52.36 0.8 4N2Q
ASG TYR A 191 148 H AlphaHelix -57.11 -53.67 1.2 4N2Q
ASG GLU A 192 149 H AlphaHelix -56.89 -44.07 50.9 4N2Q
ASG ALA A 193 150 H AlphaHelix -64.47 -52.73 3.7 4N2Q
ASG ALA A 194 151 H AlphaHelix -82.91 -36.47 0.0 4N2Q
ASG VAL A 195 152 H AlphaHelix -99.19 -57.44 15.6 4N2Q
ASG ARG A 196 153 T Turn -58.11 -50.18 93.0 4N2Q
ASG LYS A 197 154 T Turn -102.99 -49.63 144.2 4N2Q
ASG GLY A 198 155 T Turn -54.94 -16.83 6.9 4N2Q
ASG GLY A 199 156 T Turn 62.35 36.65 37.0 4N2Q
ASG CYS A 200 157 C Coil -85.24 119.92 3.6 4N2Q
ASG GLU A 201 158 C Coil -80.38 117.56 170.7 4N2Q
ASG VAL A 202 159 C Coil -109.51 -169.80 9.6 4N2Q
ASG ASP A 203 160 C Coil -128.59 -177.64 56.1 4N2Q
ASG GLU A 204 161 H AlphaHelix -56.53 -41.77 75.9 4N2Q
ASG TYR A 205 162 H AlphaHelix -54.55 -49.24 137.0 4N2Q
ASG MET A 206 163 H AlphaHelix -57.43 -48.57 0.8 4N2Q
ASG TYR A 207 164 H AlphaHelix -57.84 -53.29 14.6 4N2Q
ASG ARG A 208 165 H AlphaHelix -55.09 -39.60 137.8 4N2Q
ASG VAL A 209 166 H AlphaHelix -61.52 -47.41 25.3 4N2Q
ASG MET A 210 167 H AlphaHelix -65.97 -53.71 0.0 4N2Q
ASG ALA A 211 168 H AlphaHelix -51.89 -49.39 13.5 4N2Q
ASG LYS A 212 169 H AlphaHelix -67.36 -34.50 149.9 4N2Q
ASG GLY A 213 170 H AlphaHelix -68.12 -50.89 2.9 4N2Q
ASG MET A 214 171 H AlphaHelix -61.27 -45.41 0.0 4N2Q
ASG LYS A 215 172 H AlphaHelix -53.95 -64.83 110.0 4N2Q
ASG ARG A 216 173 H AlphaHelix -64.51 -17.87 188.2 4N2Q
ASG LEU A 217 174 H AlphaHelix -93.91 0.21 53.8 4N2Q
ASG GLY A 218 175 C Coil 85.09 9.93 47.5 4N2Q
ASG LEU A 219 176 C Coil -97.49 80.48 27.3 4N2Q
ASG ASP A 220 177 H AlphaHelix -74.38 -29.50 85.8 4N2Q
ASG GLU A 221 178 H AlphaHelix -56.83 -57.29 128.0 4N2Q
ASG GLU A 222 179 H AlphaHelix -68.56 -32.56 11.2 4N2Q
ASG ALA A 223 180 H AlphaHelix -55.61 -46.05 1.4 4N2Q
ASG ALA A 224 181 H AlphaHelix -61.46 -36.21 50.3 4N2Q
ASG GLU A 225 182 H AlphaHelix -68.84 -36.97 52.5 4N2Q
ASG VAL A 226 183 H AlphaHelix -65.74 -44.95 0.2 4N2Q
ASG GLU A 227 184 H AlphaHelix -58.81 -36.40 116.4 4N2Q
ASG ALA A 228 185 H AlphaHelix -66.99 -48.30 55.0 4N2Q
ASG ASP A 229 186 H AlphaHelix -54.77 -43.39 37.7 4N2Q
ASG LEU A 230 187 H AlphaHelix -62.66 -42.35 22.8 4N2Q
ASG ALA A 231 188 H AlphaHelix -59.24 -41.03 58.1 4N2Q
ASG ASP A 232 189 H AlphaHelix -65.09 -44.04 88.3 4N2Q
ASG TRP A 233 190 H AlphaHelix -58.33 -51.65 33.3 4N2Q
ASG GLU A 234 191 H AlphaHelix -57.06 -38.99 33.5 4N2Q
ASG ALA A 235 192 H AlphaHelix -63.66 -13.91 81.6 4N2Q
ASG ARG A 236 193 H AlphaHelix -112.97 -14.77 153.6 4N2Q
ASG HIS A 237 194 H AlphaHelix -110.51 -24.14 97.7 4N2Q
ASG LEU A 238 195 C Coil -70.05 131.18 106.0 4N2Q
ASG PRO A 239 196 C Coil -56.12 117.54 119.5 4N2Q
ASG ASP A 240 197 C Coil -66.81 -52.94 139.0 4N2Q
ASG GLU A 241 198 C Coil -131.66 360.00 220.3 4N2Q