Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/2li8.std.txt Дата изменения: Sat May 19 18:16:15 2012 Дата индексирования: Tue Oct 2 12:11:58 2012 Кодировка:

REM -------------------------------------------------------------------- 2LI8
REM 2LI8
REM STRIDE: Knowledge-based secondary structure assignment 2LI8
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2LI8
REM 2LI8
REM Residue accessible surface area calculation 2LI8
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2LI8
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2LI8
REM 2LI8
REM ------------------------ General information ----------------------- 2LI8
REM 2LI8
HDR TRANSCRIPTION/RNA 25-AUG-11 2LI8 2LI8
CMP MOL_ID: 1; 2LI8
CMP MOLECULE: PROTEIN LIN-28 HOMOLOG A; 2LI8
CMP CHAIN: A; 2LI8
CMP FRAGMENT: CCHC-TYPE 1 AND CCHC-TYPE 1 ZINC FINGER DOMAIN RES 2LI8
CMP 124-186; 2LI8
CMP SYNONYM: LIN-28A, ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 2LI8
CMP ENGINEERED: YES; 2LI8
CMP MOL_ID: 2; 2LI8
CMP MOLECULE: RNA (5'-R(*AP*GP*GP*AP*GP*AP*U)-3'); 2LI8
CMP CHAIN: B; 2LI8
CMP FRAGMENT: HSA-PRE-LET-7G TERMINAL LOOP; 2LI8
CMP ENGINEERED: YES 2LI8
SRC MOL_ID: 1; 2LI8
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 2LI8
SRC ORGANISM_COMMON: HUMAN; 2LI8
SRC ORGANISM_TAXID: 9606; 2LI8
SRC GENE: CSDD1, LIN-28A, LIN28, LIN28A, ZCCHC1; 2LI8
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2LI8
SRC EXPRESSION_SYSTEM_TAXID: 469008; 2LI8
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON PLUS; 2LI8
SRC EXPRESSION_SYSTEM_VECTOR: PET28A; 2LI8
SRC MOL_ID: 2; 2LI8
SRC SYNTHETIC: YES 2LI8
AUT F.H.-T.ALLAIN,F.E.LOUGHLIN 2LI8
REM 2LI8
REM -------------------- Secondary structure summary ------------------- 2LI8
REM 2LI8
CHN /data/npidb/pdb/pdb_new/all/pdb2li8.pdb A 2LI8
REM 2LI8
REM . . . . . 2LI8
SEQ 1 PKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVAS 50 2LI8
STR TTTT TTTTTTTTTTTTTT TTTTTTTTTTGGG 2LI8
REM 2LI8
REM . 2LI8
SEQ 51 CPLKAQQGPSAQG 63 2LI8
STR TTTGGGTTT 2LI8
REM 2LI8
REM 2LI8
REM 2LI8
LOC 310Helix VAL 171 A SER 173 A 2LI8
LOC 310Helix LYS 177 A GLN 179 A 2LI8
LOC TurnII SER 134 A ASP 137 A 2LI8
LOC TurnIV CYS 139 A CYS 142 A 2LI8
LOC TurnIV TYR 140 A GLY 143 A 2LI8
LOC TurnIV GLY 144 A HIS 147 A 2LI8
LOC TurnI HIS 148 A GLU 151 A 2LI8
LOC TurnIV ALA 149 A CYS 152 A 2LI8
LOC TurnIV CYS 161 A CYS 164 A 2LI8
LOC TurnIV HIS 162 A GLN 165 A 2LI8
LOC TurnIV SER 166 A HIS 169 A 2LI8
LOC TurnIV ILE 167 A MET 170 A 2LI8
LOC TurnIV CYS 174 A LYS 177 A 2LI8
LOC TurnIV GLN 179 A PRO 182 A 2LI8
REM 2LI8
REM --------------- Detailed secondary structure assignment------------- 2LI8
REM 2LI8
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2LI8
ASG PRO A 124 1 C Coil 360.00 131.68 111.1 2LI8
ASG LYS A 125 2 C Coil -153.86 162.36 190.2 2LI8
ASG GLY A 126 3 C Coil 176.95 -157.54 71.6 2LI8
ASG LYS A 127 4 C Coil -139.39 171.69 187.1 2LI8
ASG SER A 128 5 C Coil -64.69 138.34 120.2 2LI8
ASG MET A 129 6 C Coil -158.42 170.04 103.7 2LI8
ASG GLN A 130 7 C Coil -144.82 171.08 126.7 2LI8
ASG LYS A 131 8 C Coil -64.58 103.87 139.4 2LI8
ASG ARG A 132 9 C Coil -136.87 -174.65 132.3 2LI8
ASG ARG A 133 10 C Coil -142.98 167.29 209.0 2LI8
ASG SER A 134 11 T Turn 55.75 -147.92 82.0 2LI8
ASG LYS A 135 12 T Turn -49.21 143.06 187.7 2LI8
ASG GLY A 136 13 T Turn 104.05 -10.24 84.2 2LI8
ASG ASP A 137 14 T Turn -140.19 -177.60 37.0 2LI8
ASG ARG A 138 15 C Coil -130.76 177.13 141.7 2LI8
ASG CYS A 139 16 T Turn -44.67 116.16 5.0 2LI8
ASG TYR A 140 17 T Turn -67.90 5.46 104.0 2LI8
ASG ASN A 141 18 T Turn -117.11 -40.48 27.3 2LI8
ASG CYS A 142 19 T Turn -120.66 -37.46 51.9 2LI8
ASG GLY A 143 20 T Turn 109.83 18.45 37.3 2LI8
ASG GLY A 144 21 T Turn -89.62 165.05 17.5 2LI8
ASG LEU A 145 22 T Turn -115.21 -21.08 129.9 2LI8
ASG ASP A 146 23 T Turn -75.60 -1.90 157.9 2LI8
ASG HIS A 147 24 T Turn -157.35 -171.98 26.8 2LI8
ASG HIS A 148 25 T Turn -130.58 170.51 84.8 2LI8
ASG ALA A 149 26 T Turn -57.51 -18.12 42.3 2LI8
ASG LYS A 150 27 T Turn -95.48 -7.43 177.7 2LI8
ASG GLU A 151 28 T Turn -121.46 8.08 138.5 2LI8
ASG CYS A 152 29 T Turn -56.22 164.13 25.8 2LI8
ASG LYS A 153 30 C Coil -122.63 6.07 166.8 2LI8
ASG LEU A 154 31 C Coil -119.01 167.23 64.3 2LI8
ASG PRO A 155 32 C Coil -64.03 169.03 88.9 2LI8
ASG PRO A 156 33 C Coil -67.49 98.68 123.2 2LI8
ASG GLN A 157 34 C Coil -73.47 163.68 71.7 2LI8
ASG PRO A 158 35 C Coil -79.32 134.70 67.8 2LI8
ASG LYS A 159 36 C Coil -75.03 142.46 138.5 2LI8
ASG LYS A 160 37 C Coil -115.30 161.26 95.9 2LI8
ASG CYS A 161 38 T Turn -51.41 123.49 0.8 2LI8
ASG HIS A 162 39 T Turn -67.87 10.93 101.0 2LI8
ASG PHE A 163 40 T Turn -131.35 -33.69 57.3 2LI8
ASG CYS A 164 41 T Turn -135.68 2.75 20.8 2LI8
ASG GLN A 165 42 T Turn 57.28 24.90 100.3 2LI8
ASG SER A 166 43 T Turn -88.35 111.90 45.2 2LI8
ASG ILE A 167 44 T Turn -61.60 -20.38 102.7 2LI8
ASG SER A 168 45 T Turn -46.11 -48.21 112.0 2LI8
ASG HIS A 169 46 T Turn -133.72 -165.77 40.2 2LI8
ASG MET A 170 47 T Turn -124.81 163.64 58.4 2LI8
ASG VAL A 171 48 G 310Helix -56.17 -22.98 43.9 2LI8
ASG ALA A 172 49 G 310Helix -64.87 -8.68 92.9 2LI8
ASG SER A 173 50 G 310Helix -146.66 13.40 88.0 2LI8
ASG CYS A 174 51 T Turn -52.27 130.67 3.5 2LI8
ASG PRO A 175 52 T Turn -72.01 -13.60 79.7 2LI8
ASG LEU A 176 53 T Turn -84.75 -54.85 45.5 2LI8
ASG LYS A 177 54 G 310Helix -54.89 -21.99 57.1 2LI8
ASG ALA A 178 55 G 310Helix -57.16 -18.14 66.0 2LI8
ASG GLN A 179 56 G 310Helix -141.62 18.82 118.6 2LI8
ASG GLN A 180 57 T Turn -124.84 -23.28 121.8 2LI8
ASG GLY A 181 58 T Turn -178.14 55.92 38.0 2LI8
ASG PRO A 182 59 T Turn -69.34 -10.07 79.0 2LI8
ASG SER A 183 60 C Coil 50.06 -169.02 93.4 2LI8
ASG ALA A 184 61 C Coil -149.78 14.08 106.4 2LI8
ASG GLN A 185 62 C Coil -148.33 150.73 179.8 2LI8
ASG GLY A 186 63 C Coil -171.48 360.00 144.6 2LI8