Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/2ad9.std.txt Дата изменения: Sat May 19 08:26:51 2012 Дата индексирования: Tue Oct 2 12:04:09 2012 Кодировка:

REM -------------------------------------------------------------------- 2AD9
REM 2AD9
REM STRIDE: Knowledge-based secondary structure assignment 2AD9
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2AD9
REM 2AD9
REM Residue accessible surface area calculation 2AD9
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2AD9
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2AD9
REM 2AD9
REM ------------------------ General information ----------------------- 2AD9
REM 2AD9
HDR RNA BINDING PROTEIN/RNA 20-JUL-05 2AD9 2AD9
CMP MOL_ID: 1; 2AD9
CMP MOLECULE: POLYPYRIMIDINE TRACT-BINDING PROTEIN 1; 2AD9
CMP CHAIN: A; 2AD9
CMP FRAGMENT: RBD1; 2AD9
CMP SYNONYM: PTB, HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN I, 2AD9
CMP HNRNP I, 57 KDA RNA-BINDING PROTEIN PPTB-1; 2AD9
CMP ENGINEERED: YES; 2AD9
CMP MOL_ID: 2; 2AD9
CMP MOLECULE: 5'-R(*CP*UP*CP*UP*CP*U)-3'; 2AD9
CMP CHAIN: B; 2AD9
CMP ENGINEERED: YES 2AD9
SRC MOL_ID: 1; 2AD9
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 2AD9
SRC ORGANISM_COMMON: HUMAN; 2AD9
SRC ORGANISM_TAXID: 9606; 2AD9
SRC GENE: PTB-1; 2AD9
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); 2AD9
SRC EXPRESSION_SYSTEM_TAXID: 469008; 2AD9
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 2AD9
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 2AD9
SRC EXPRESSION_SYSTEM_PLASMID: PET28A(+); 2AD9
SRC MOL_ID: 2; 2AD9
SRC SYNTHETIC: YES; 2AD9
SRC OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. 2AD9
AUT F.C.OBERSTRASS,S.D.AUWETER,M.ERAT,Y.HARGOUS,A.HENNING, 2AD9
AUT P.WENTER,L.REYMOND,S.PITSCH,D.L.BLACK,F.H.T.ALLAIN 2AD9
REM 2AD9
REM -------------------- Secondary structure summary ------------------- 2AD9
REM 2AD9
CHN /data/npidb/pdb/pdb_new/all/pdb2ad9.pdb A 2AD9
REM 2AD9
REM . . . . . 2AD9
SEQ 1 GDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAF 50 2AD9
STR TTTTTTTT EEEEE TTTT HHHHHHHHHTTT EEEEEGGG EEE 2AD9
REM 2AD9
REM . . . . 2AD9
SEQ 51 IEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQAR 98 2AD9
STR EE HHHHHHHHHHHHHH TBTTB EEEE GGGG 2AD9
REM 2AD9
REM 2AD9
REM 2AD9
LOC AlphaHelix GLU 72 A LEU 80 A 2AD9
LOC AlphaHelix GLU 104 A VAL 117 A 2AD9
LOC 310Helix LYS 92 A LYS 94 A 2AD9
LOC 310Helix PRO 142 A ALA 145 A 2AD9
LOC Strand VAL 60 A ARG 64 A 2AD9
LOC Strand ASN 87 A LEU 91 A 2AD9
LOC Strand GLN 96 A GLU 100 A 2AD9
LOC Strand TYR 127 A PHE 130 A 2AD9
LOC TurnIV ASP 50 A SER 53 A 2AD9
LOC TurnIV ALA 54 A PRO 57 A 2AD9
LOC TurnIV PRO 67 A VAL 70 A 2AD9
LOC TurnI LEU 80 A GLY 83 A 2AD9
LOC TurnIV VAL 120 A GLY 123 A 2AD9
LOC TurnIV LEU 121 A GLN 124 A 2AD9
LOC GammaInv VAL 120 A ARG 122 A 2AD9
REM 2AD9
REM --------------- Detailed secondary structure assignment------------- 2AD9
REM 2AD9
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2AD9
ASG GLY A 49 1 C Coil 360.00 -176.78 123.8 2AD9
ASG ASP A 50 2 T Turn -94.20 -1.70 142.9 2AD9
ASG SER A 51 3 T Turn -61.62 -5.47 103.2 2AD9
ASG ARG A 52 4 T Turn -56.65 -48.98 177.4 2AD9
ASG SER A 53 5 T Turn -75.94 136.05 71.2 2AD9
ASG ALA A 54 6 T Turn -66.62 166.96 48.2 2AD9
ASG GLY A 55 7 T Turn -153.47 -36.96 78.3 2AD9
ASG VAL A 56 8 T Turn -143.97 71.72 137.3 2AD9
ASG PRO A 57 9 T Turn -93.20 -173.25 49.9 2AD9
ASG SER A 58 10 C Coil -138.34 -178.59 14.0 2AD9
ASG ARG A 59 11 C Coil -51.87 -7.49 45.5 2AD9
ASG VAL A 60 12 E Strand -99.31 129.63 0.4 2AD9
ASG ILE A 61 13 E Strand -105.84 157.87 0.0 2AD9
ASG HIS A 62 14 E Strand -128.17 142.87 36.1 2AD9
ASG ILE A 63 15 E Strand -123.76 140.01 9.8 2AD9
ASG ARG A 64 16 E Strand -114.69 174.30 81.2 2AD9
ASG LYS A 65 17 C Coil 71.39 -2.92 91.5 2AD9
ASG LEU A 66 18 C Coil -35.34 145.72 11.9 2AD9
ASG PRO A 67 19 T Turn -52.26 165.23 45.8 2AD9
ASG ILE A 68 20 T Turn -56.66 -31.59 169.6 2AD9
ASG ASP A 69 21 T Turn -161.45 41.71 120.8 2AD9
ASG VAL A 70 22 T Turn -57.63 157.93 30.7 2AD9
ASG THR A 71 23 C Coil -123.71 154.70 80.8 2AD9
ASG GLU A 72 24 H AlphaHelix -54.78 -42.60 112.3 2AD9
ASG GLY A 73 25 H AlphaHelix -53.62 -36.96 36.9 2AD9
ASG GLU A 74 26 H AlphaHelix -71.44 -52.34 113.1 2AD9
ASG VAL A 75 27 H AlphaHelix -59.71 -46.25 10.9 2AD9
ASG ILE A 76 28 H AlphaHelix -69.75 -34.24 41.1 2AD9
ASG SER A 77 29 H AlphaHelix -67.80 -19.31 71.6 2AD9
ASG LEU A 78 30 H AlphaHelix -89.62 -15.53 62.6 2AD9
ASG GLY A 79 31 H AlphaHelix -101.30 -13.23 0.0 2AD9
ASG LEU A 80 32 H AlphaHelix -63.34 -44.98 72.4 2AD9
ASG PRO A 81 33 T Turn -57.10 -5.22 106.6 2AD9
ASG PHE A 82 34 T Turn -103.96 -39.93 40.0 2AD9
ASG GLY A 83 35 T Turn -154.77 -82.77 34.8 2AD9
ASG LYS A 84 36 C Coil -152.05 -8.98 129.5 2AD9
ASG VAL A 85 37 C Coil 27.18 109.20 17.1 2AD9
ASG THR A 86 38 C Coil -59.30 -36.62 75.8 2AD9
ASG ASN A 87 39 E Strand -162.56 178.23 43.9 2AD9
ASG LEU A 88 40 E Strand -136.88 172.76 7.8 2AD9
ASG LEU A 89 41 E Strand -142.43 156.27 40.8 2AD9
ASG MET A 90 42 E Strand -128.98 107.76 55.8 2AD9
ASG LEU A 91 43 E Strand -78.34 54.40 42.6 2AD9
ASG LYS A 92 44 G 310Helix -64.78 -27.37 81.0 2AD9
ASG GLY A 93 45 G 310Helix -65.62 -14.39 78.5 2AD9
ASG LYS A 94 46 G 310Helix -112.01 2.89 133.0 2AD9
ASG ASN A 95 47 C Coil 50.66 54.27 60.7 2AD9
ASG GLN A 96 48 E Strand -132.12 168.52 59.3 2AD9
ASG ALA A 97 49 E Strand -154.60 166.47 0.0 2AD9
ASG PHE A 98 50 E Strand -111.50 156.08 26.3 2AD9
ASG ILE A 99 51 E Strand -139.69 106.69 0.0 2AD9
ASG GLU A 100 52 E Strand -96.97 137.60 1.0 2AD9
ASG MET A 101 53 C Coil -133.04 150.55 0.0 2AD9
ASG ASN A 102 54 C Coil -71.92 -15.28 81.3 2AD9
ASG THR A 103 55 C Coil -144.53 143.83 49.1 2AD9
ASG GLU A 104 56 H AlphaHelix -64.20 -37.74 125.0 2AD9
ASG GLU A 105 57 H AlphaHelix -73.26 -39.73 141.0 2AD9
ASG ALA A 106 58 H AlphaHelix -54.62 -51.52 4.8 2AD9
ASG ALA A 107 59 H AlphaHelix -69.62 -37.60 0.0 2AD9
ASG ASN A 108 60 H AlphaHelix -55.54 -49.62 72.2 2AD9
ASG THR A 109 61 H AlphaHelix -66.63 -29.49 73.5 2AD9
ASG MET A 110 62 H AlphaHelix -71.73 -45.25 0.0 2AD9
ASG VAL A 111 63 H AlphaHelix -68.74 -40.40 11.2 2AD9
ASG ASN A 112 64 H AlphaHelix -68.43 -43.10 87.9 2AD9
ASG TYR A 113 65 H AlphaHelix -48.57 -44.91 79.2 2AD9
ASG TYR A 114 66 H AlphaHelix -80.24 -14.87 18.3 2AD9
ASG THR A 115 67 H AlphaHelix -85.22 -13.55 105.9 2AD9
ASG SER A 116 68 H AlphaHelix -97.89 -56.04 106.5 2AD9
ASG VAL A 117 69 H AlphaHelix -70.86 -32.49 63.1 2AD9
ASG THR A 118 70 C Coil -6.26 113.86 46.6 2AD9
ASG PRO A 119 71 C Coil -75.61 -0.72 48.2 2AD9
ASG VAL A 120 72 T Turn 59.89 108.96 80.5 2AD9
ASG LEU A 121 73 B Bridge -76.02 80.47 13.2 2AD9
ASG ARG A 122 74 T Turn 45.30 -13.91 215.7 2AD9
ASG GLY A 123 75 T Turn 178.46 12.09 63.6 2AD9
ASG GLN A 124 76 B Bridge -142.53 156.13 85.9 2AD9
ASG PRO A 125 77 C Coil -53.32 166.74 78.6 2AD9
ASG ILE A 126 78 C Coil -119.21 142.86 45.0 2AD9
ASG TYR A 127 79 E Strand -114.16 98.68 88.2 2AD9
ASG ILE A 128 80 E Strand -121.18 147.56 28.3 2AD9
ASG GLN A 129 81 E Strand -150.96 160.51 63.6 2AD9
ASG PHE A 130 82 E Strand -54.12 152.01 23.6 2AD9
ASG SER A 131 83 C Coil -75.04 159.64 14.0 2AD9
ASG ASN A 132 84 C Coil -67.99 -12.30 84.5 2AD9
ASG HIS A 133 85 C Coil -118.24 -176.49 115.9 2AD9
ASG LYS A 134 86 C Coil -129.73 147.08 138.2 2AD9
ASG GLU A 135 87 C Coil 51.87 92.07 106.6 2AD9
ASG LEU A 136 88 C Coil -64.72 139.80 23.4 2AD9
ASG LYS A 137 89 C Coil -132.00 146.51 160.1 2AD9
ASG THR A 138 90 C Coil -132.65 15.47 83.7 2AD9
ASG ASP A 139 91 C Coil -61.14 156.08 153.6 2AD9
ASG SER A 140 92 C Coil -69.99 166.31 62.2 2AD9
ASG SER A 141 93 C Coil -71.00 160.87 75.1 2AD9
ASG PRO A 142 94 G 310Helix -57.88 -25.24 106.4 2AD9
ASG ASN A 143 95 G 310Helix -60.67 -43.69 127.6 2AD9
ASG GLN A 144 96 G 310Helix -55.44 -36.80 138.0 2AD9
ASG ALA A 145 97 G 310Helix -69.40 -13.41 93.8 2AD9
ASG ARG A 146 98 C Coil -126.47 360.00 268.5 2AD9