Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/2mjh.std.txt Дата изменения: Fri Oct 9 21:55:21 2015 Дата индексирования: Sun Apr 10 18:20:22 2016 Кодировка:

REM -------------------------------------------------------------------- 2MJH
REM 2MJH
REM STRIDE: Knowledge-based secondary structure assignment 2MJH
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2MJH
REM 2MJH
REM Residue accessible surface area calculation 2MJH
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2MJH
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2MJH
REM 2MJH
REM ------------------------ General information ----------------------- 2MJH
REM 2MJH
HDR RNA BINDING PROTEIN 09-JAN-14 2MJH 2MJH
CMP MOL_ID: 1; 2MJH
CMP MOLECULE: FEMALE GERMLINE-SPECIFIC TUMOR SUPPRESSOR GLD-1; 2MJH
CMP CHAIN: A; 2MJH
CMP FRAGMENT: KH-QUA2 DOMAIN OF GLD-1, UNP RESIDUES 195-336; 2MJH
CMP SYNONYM: DEFECTIVE IN GERM LINE DEVELOPMENT PROTEIN 1; 2MJH
CMP ENGINEERED: YES; 2MJH
CMP MOL_ID: 2; 2MJH
CMP MOLECULE: 5'-CUACUCAUAU-3'; 2MJH
CMP CHAIN: B; 2MJH
CMP ENGINEERED: YES 2MJH
SRC MOL_ID: 1; 2MJH
SRC ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; 2MJH
SRC ORGANISM_COMMON: NEMATODE; 2MJH
SRC ORGANISM_TAXID: 6239; 2MJH
SRC GENE: GLD-1, T23G11.3; 2MJH
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2MJH
SRC EXPRESSION_SYSTEM_TAXID: 469008; 2MJH
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 2MJH
SRC EXPRESSION_SYSTEM_VECTOR: PTYB1; 2MJH
SRC OTHER_DETAILS: PURIFICATION VIA THE IMPACT SYSTEM (NEB) THAT 2MJH
SRC IN THE PROTEIN WITHOUT ANY ADDITIONAL RESIDUES; 2MJH
SRC MOL_ID: 2; 2MJH
SRC SYNTHETIC: YES 2MJH
AUT G.M.DAUBNER,F.H-T.ALLAIN 2MJH
REM 2MJH
REM -------------------- Secondary structure summary ------------------- 2MJH
REM 2MJH
CHN /data/npidb/pdb/pdb_new/all/pdb2mjh.pdb A 2MJH
REM 2MJH
REM . . . . . 2MJH
SEQ 1 LPEPAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKI 50 2MJH
STR EEEEEEEEE GGGTTTT HHHHHH GGGHHHHHHHHHH EE 2MJH
REM 2MJH
REM . . . . . 2MJH
SEQ 51 MVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAA 100 2MJH
STR EEETTTTTTTTTTTTTTT TTTT EEEEEEEEETTHHHHHHHHH 2MJH
REM 2MJH
REM . . . . 2MJH
SEQ 101 LEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKSPNPA 142 2MJH
STR HHHHHHHH TTTTTHHHHHHHHHHHHHH TTTT 2MJH
REM 2MJH
REM 2MJH
REM 2MJH
LOC AlphaHelix PHE 221 A LEU 226 A 2MJH
LOC AlphaHelix MET 231 A THR 240 A 2MJH
LOC AlphaHelix ARG 286 A LEU 302 A 2MJH
LOC AlphaHelix GLU 311 A ASN 324 A 2MJH
LOC 310Helix LYS 213 A GLU 215 A 2MJH
LOC 310Helix PRO 228 A GLY 230 A 2MJH
LOC Strand MET 202 A TYR 210 A 2MJH
LOC Strand LYS 243 A ARG 247 A 2MJH
LOC Strand HIS 275 A THR 283 A 2MJH
LOC TurnI TYR 216 A TYR 219 A 2MJH
LOC TurnIV ARG 247 A GLY 250 A 2MJH
LOC TurnI GLY 248 A SER 251 A 2MJH
LOC TurnI LYS 249 A MET 252 A 2MJH
LOC TurnI ARG 253 A SER 256 A 2MJH
LOC TurnIV LYS 255 A GLU 258 A 2MJH
LOC TurnIV SER 259 A ARG 262 A 2MJH
LOC TurnII' TRP 267 A LEU 270 A 2MJH
LOC TurnI THR 283 A ARG 286 A 2MJH
LOC TurnII PRO 306 A THR 309 A 2MJH
LOC TurnIV GLU 307 A ASP 310 A 2MJH
LOC TurnIV GLY 308 A GLU 311 A 2MJH
LOC TurnIV SER 332 A PRO 335 A 2MJH
REM 2MJH
REM --------------- Detailed secondary structure assignment------------- 2MJH
REM 2MJH
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2MJH
ASG LEU A 195 1 C Coil 360.00 149.60 141.5 2MJH
ASG PRO A 196 2 C Coil -72.38 175.72 60.8 2MJH
ASG GLU A 197 3 C Coil -75.75 155.36 154.3 2MJH
ASG PRO A 198 4 C Coil -59.86 158.62 74.6 2MJH
ASG ALA A 199 5 C Coil -97.69 -158.63 31.5 2MJH
ASG GLY A 200 6 C Coil -85.40 -28.26 74.0 2MJH
ASG ASP A 201 7 C Coil -152.51 164.29 92.0 2MJH
ASG MET A 202 8 E Strand -79.94 134.00 110.5 2MJH
ASG ILE A 203 9 E Strand -111.97 157.76 42.5 2MJH
ASG SER A 204 10 E Strand -142.69 136.40 75.4 2MJH
ASG ILE A 205 11 E Strand -156.54 167.08 74.3 2MJH
ASG THR A 206 12 E Strand -146.83 158.26 47.9 2MJH
ASG GLU A 207 13 E Strand -123.08 142.66 78.6 2MJH
ASG LYS A 208 14 E Strand -117.00 119.45 92.0 2MJH
ASG ILE A 209 15 E Strand -135.78 116.51 46.4 2MJH
ASG TYR A 210 16 E Strand -75.00 151.96 113.1 2MJH
ASG VAL A 211 17 C Coil -78.31 134.21 9.0 2MJH
ASG PRO A 212 18 C Coil -75.28 32.95 29.2 2MJH
ASG LYS A 213 19 G 310Helix -61.69 -6.89 71.1 2MJH
ASG ASN A 214 20 G 310Helix -73.32 -7.88 132.5 2MJH
ASG GLU A 215 21 G 310Helix -111.29 -19.08 127.3 2MJH
ASG TYR A 216 22 T Turn -126.89 60.27 68.4 2MJH
ASG PRO A 217 23 T Turn -68.32 -7.00 87.5 2MJH
ASG ASP A 218 24 T Turn -110.74 11.61 162.3 2MJH
ASG TYR A 219 25 T Turn -108.75 153.57 40.6 2MJH
ASG ASN A 220 26 C Coil -116.86 86.75 90.7 2MJH
ASG PHE A 221 27 H AlphaHelix -68.53 -30.45 5.3 2MJH
ASG VAL A 222 28 H AlphaHelix -62.22 -33.45 30.4 2MJH
ASG GLY A 223 29 H AlphaHelix -81.08 -28.65 39.7 2MJH
ASG ARG A 224 30 H AlphaHelix -77.46 -36.85 19.5 2MJH
ASG ILE A 225 31 H AlphaHelix -83.41 -34.51 1.8 2MJH
ASG LEU A 226 32 H AlphaHelix -87.62 -31.40 40.9 2MJH
ASG GLY A 227 33 C Coil 68.02 -174.83 14.0 2MJH
ASG PRO A 228 34 G 310Helix -66.34 132.74 7.5 2MJH
ASG ARG A 229 35 G 310Helix 47.95 25.61 187.7 2MJH
ASG GLY A 230 36 G 310Helix 74.81 7.15 22.8 2MJH
ASG MET A 231 37 H AlphaHelix -57.51 -36.91 87.3 2MJH
ASG THR A 232 38 H AlphaHelix -73.14 -24.43 32.2 2MJH
ASG ALA A 233 39 H AlphaHelix -72.37 -33.23 11.6 2MJH
ASG LYS A 234 40 H AlphaHelix -78.76 -30.01 129.5 2MJH
ASG GLN A 235 41 H AlphaHelix -75.03 -33.29 104.1 2MJH
ASG LEU A 236 42 H AlphaHelix -72.38 -42.50 14.8 2MJH
ASG GLU A 237 43 H AlphaHelix -74.51 -21.81 47.4 2MJH
ASG GLN A 238 44 H AlphaHelix -88.79 -27.44 130.8 2MJH
ASG ASP A 239 45 H AlphaHelix -80.56 -34.98 123.4 2MJH
ASG THR A 240 46 H AlphaHelix -97.23 -13.99 11.2 2MJH
ASG GLY A 241 47 C Coil 72.16 3.53 54.2 2MJH
ASG CYS A 242 48 C Coil -103.25 155.47 2.6 2MJH
ASG LYS A 243 49 E Strand -90.14 136.24 111.4 2MJH
ASG ILE A 244 50 E Strand -101.12 139.31 18.7 2MJH
ASG MET A 245 51 E Strand -145.48 132.26 45.3 2MJH
ASG VAL A 246 52 E Strand -148.60 130.83 9.5 2MJH
ASG ARG A 247 53 E Strand -165.86 170.52 31.3 2MJH
ASG GLY A 248 54 T Turn 169.86 -159.20 3.7 2MJH
ASG LYS A 249 55 T Turn -62.91 -5.07 103.1 2MJH
ASG GLY A 250 56 T Turn -78.09 -16.87 46.7 2MJH
ASG SER A 251 57 T Turn -88.03 8.19 2.0 2MJH
ASG MET A 252 58 T Turn -60.81 159.67 78.1 2MJH
ASG ARG A 253 59 T Turn -117.30 30.21 157.8 2MJH
ASG ASP A 254 60 T Turn -66.62 -1.04 154.6 2MJH
ASG LYS A 255 61 T Turn -69.76 -12.26 110.7 2MJH
ASG SER A 256 62 T Turn 64.09 -3.30 106.9 2MJH
ASG LYS A 257 63 T Turn -149.92 8.50 193.0 2MJH
ASG GLU A 258 64 T Turn -154.60 154.08 100.3 2MJH
ASG SER A 259 65 T Turn -127.15 -19.15 22.8 2MJH
ASG ALA A 260 66 T Turn 52.41 15.09 66.5 2MJH
ASG HIS A 261 67 T Turn -130.32 22.47 39.1 2MJH
ASG ARG A 262 68 T Turn 55.49 87.98 236.8 2MJH
ASG GLY A 263 69 C Coil 69.68 -155.70 50.3 2MJH
ASG LYS A 264 70 C Coil -74.86 162.84 189.6 2MJH
ASG ALA A 265 71 C Coil -142.56 177.66 30.8 2MJH
ASG ASN A 266 72 C Coil -126.13 15.43 151.3 2MJH
ASG TRP A 267 73 T Turn -80.59 35.49 105.1 2MJH
ASG GLU A 268 74 T Turn 54.07 -143.76 155.1 2MJH
ASG HIS A 269 75 T Turn -84.29 18.25 153.1 2MJH
ASG LEU A 270 76 T Turn 52.53 30.70 24.0 2MJH
ASG GLU A 271 77 C Coil -76.77 6.14 154.1 2MJH
ASG ASP A 272 78 C Coil -103.91 147.84 50.3 2MJH
ASG ASP A 273 79 C Coil -75.97 174.27 66.1 2MJH
ASG LEU A 274 80 C Coil -56.57 124.46 16.9 2MJH
ASG HIS A 275 81 E Strand -145.02 164.39 16.4 2MJH
ASG VAL A 276 82 E Strand -124.11 146.43 1.4 2MJH
ASG LEU A 277 83 E Strand -134.11 145.15 30.7 2MJH
ASG VAL A 278 84 E Strand -139.65 114.07 0.0 2MJH
ASG GLN A 279 85 E Strand -102.46 143.07 72.6 2MJH
ASG CYS A 280 86 E Strand -143.09 144.55 3.7 2MJH
ASG GLU A 281 87 E Strand -140.75 124.74 125.1 2MJH
ASG ASP A 282 88 E Strand -167.79 -172.82 9.8 2MJH
ASG THR A 283 89 E Strand -71.31 167.40 7.2 2MJH
ASG GLU A 284 90 T Turn -59.74 -8.66 103.5 2MJH
ASG ASN A 285 91 T Turn -106.61 -11.58 66.1 2MJH
ASG ARG A 286 92 H AlphaHelix -131.29 -14.53 63.5 2MJH
ASG VAL A 287 93 H AlphaHelix -67.73 -27.24 0.2 2MJH
ASG HIS A 288 94 H AlphaHelix -82.49 -38.05 106.8 2MJH
ASG ILE A 289 95 H AlphaHelix -66.68 -39.14 79.9 2MJH
ASG LYS A 290 96 H AlphaHelix -75.61 -33.19 64.0 2MJH
ASG LEU A 291 97 H AlphaHelix -66.48 -45.70 4.8 2MJH
ASG GLN A 292 98 H AlphaHelix -66.65 -34.18 111.9 2MJH
ASG ALA A 293 99 H AlphaHelix -73.41 -37.45 30.3 2MJH
ASG ALA A 294 100 H AlphaHelix -65.98 -46.05 0.0 2MJH
ASG LEU A 295 101 H AlphaHelix -70.97 -12.82 18.0 2MJH
ASG GLU A 296 102 H AlphaHelix -74.07 -33.46 105.6 2MJH
ASG GLN A 297 103 H AlphaHelix -73.22 -32.20 33.3 2MJH
ASG VAL A 298 104 H AlphaHelix -75.58 -43.04 0.4 2MJH
ASG LYS A 299 105 H AlphaHelix -60.52 -41.34 109.5 2MJH
ASG LYS A 300 106 H AlphaHelix -66.29 -17.35 127.1 2MJH
ASG LEU A 301 107 H AlphaHelix -90.35 -11.27 27.1 2MJH
ASG LEU A 302 108 H AlphaHelix -91.28 7.18 9.5 2MJH
ASG ILE A 303 109 C Coil -127.98 54.80 110.7 2MJH
ASG PRO A 304 110 C Coil -69.38 175.47 15.1 2MJH
ASG ALA A 305 111 C Coil -117.90 164.19 37.5 2MJH
ASG PRO A 306 112 T Turn -54.78 164.02 85.7 2MJH
ASG GLU A 307 113 T Turn -61.75 147.42 170.8 2MJH
ASG GLY A 308 114 T Turn 74.00 3.49 81.1 2MJH
ASG THR A 309 115 T Turn -129.58 -1.15 92.9 2MJH
ASG ASP A 310 116 T Turn -123.86 79.87 13.9 2MJH
ASG GLU A 311 117 H AlphaHelix -70.28 -12.36 115.5 2MJH
ASG LEU A 312 118 H AlphaHelix -69.71 -20.15 89.7 2MJH
ASG LYS A 313 119 H AlphaHelix -106.10 -20.05 49.6 2MJH
ASG ARG A 314 120 H AlphaHelix -76.96 -28.38 174.1 2MJH
ASG LYS A 315 121 H AlphaHelix -78.70 -22.83 121.7 2MJH
ASG GLN A 316 122 H AlphaHelix -75.29 -31.07 39.3 2MJH
ASG LEU A 317 123 H AlphaHelix -78.73 -22.59 96.8 2MJH
ASG MET A 318 124 H AlphaHelix -71.41 -44.96 123.9 2MJH
ASG GLU A 319 125 H AlphaHelix -72.73 -32.77 86.6 2MJH
ASG LEU A 320 126 H AlphaHelix -61.17 -30.90 55.1 2MJH
ASG ALA A 321 127 H AlphaHelix -83.66 -15.38 15.4 2MJH
ASG ILE A 322 128 H AlphaHelix -85.36 -30.80 92.4 2MJH
ASG ILE A 323 129 H AlphaHelix -69.97 -36.07 79.1 2MJH
ASG ASN A 324 130 H AlphaHelix -103.35 -4.42 84.8 2MJH
ASG GLY A 325 131 C Coil 75.86 18.32 59.2 2MJH
ASG THR A 326 132 C Coil -103.83 12.07 80.9 2MJH
ASG TYR A 327 133 C Coil -61.49 155.52 143.6 2MJH
ASG ARG A 328 134 C Coil -133.62 140.57 162.2 2MJH
ASG PRO A 329 135 C Coil -82.35 -0.91 120.4 2MJH
ASG MET A 330 136 C Coil 53.51 179.85 136.7 2MJH
ASG LYS A 331 137 C Coil -147.69 162.04 198.5 2MJH
ASG SER A 332 138 T Turn -144.00 153.30 95.6 2MJH
ASG PRO A 333 139 T Turn -71.91 161.25 121.1 2MJH
ASG ASN A 334 140 T Turn 45.79 56.42 152.1 2MJH
ASG PRO A 335 141 T Turn -71.76 164.82 100.3 2MJH
ASG ALA A 336 142 C Coil 47.12 360.00 170.3 2MJH