Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1xpx.std.txt Дата изменения: Sat May 19 05:24:49 2012 Дата индексирования: Tue Oct 2 12:01:41 2012 Кодировка:

REM -------------------------------------------------------------------- 1XPX
REM 1XPX
REM STRIDE: Knowledge-based secondary structure assignment 1XPX
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1XPX
REM 1XPX
REM Residue accessible surface area calculation 1XPX
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1XPX
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1XPX
REM 1XPX
REM ------------------------ General information ----------------------- 1XPX
REM 1XPX
HDR TRANSCRIPTION REGULATION/DNA 09-OCT-04 1XPX 1XPX
CMP MOL_ID: 1; 1XPX
CMP MOLECULE: 5'-D(*AP*GP*CP*AP*TP*GP*CP*CP*TP*G)-3'; 1XPX
CMP CHAIN: D; 1XPX
CMP ENGINEERED: YES; 1XPX
CMP MOL_ID: 2; 1XPX
CMP MOLECULE: 5'-D(*CP*AP*GP*GP*CP*AP*TP*GP*CP*T)-3'; 1XPX
CMP CHAIN: C; 1XPX
CMP ENGINEERED: YES; 1XPX
CMP MOL_ID: 3; 1XPX
CMP MOLECULE: PROTEIN PROSPERO; 1XPX
CMP CHAIN: A; 1XPX
CMP FRAGMENT: HOMEO-PROSPERO DOMAIN (RESIDUES 1245-1401); 1XPX
CMP ENGINEERED: YES 1XPX
SRC MOL_ID: 1; 1XPX
SRC SYNTHETIC: YES; 1XPX
SRC MOL_ID: 2; 1XPX
SRC SYNTHETIC: YES; 1XPX
SRC MOL_ID: 3; 1XPX
SRC ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; 1XPX
SRC ORGANISM_COMMON: FRUIT FLY; 1XPX
SRC ORGANISM_TAXID: 7227; 1XPX
SRC GENE: PROS; 1XPX
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); 1XPX
SRC EXPRESSION_SYSTEM_TAXID: 469008; 1XPX
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 1XPX
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1XPX
SRC EXPRESSION_SYSTEM_PLASMID: PET15B 1XPX
AUT M.S.YOUSEF,B.W.MATTHEWS 1XPX
REM 1XPX
REM -------------------- Secondary structure summary ------------------- 1XPX
REM 1XPX
CHN /data/npidb/pdb/pdb_new/all/pdb1xpx.pdb A 1XPX
REM 1XPX
REM . . . . . 1XPX
SEQ 1 SSTLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIKFNKNNTAQLVKWFSN 50 1XPX
STR TTTTTTTTTGGGG TTTTTTTTTGGGTTTT TTTTTTTGGGGGGG 1XPX
REM 1XPX
REM . . . . . 1XPX
SEQ 51 FREFYYIQMEKYARQAVTESELYRVLNLHYNRNNHIEVPQNFRFVVESTL 100 1XPX
STR GGTTTTTTTTTTTTTTTTT GGGGTTTTTTTTTTTTT GGGGGTTTTGG 1XPX
REM 1XPX
REM . . . . 1XPX
SEQ 101 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSPNFLEQ 144 1XPX
STR GTTTTTGGGTTTTTTTTTTTGGGGGGG GGGG GGG 1XPX
REM 1XPX
REM 1XPX
REM 1XPX
LOC 310Helix LEU 1258 A PHE 1261 A 1XPX
LOC 310Helix LYS 1272 A TYR 1274 A 1XPX
LOC 310Helix LEU 1288 A ARG 1296 A 1XPX
LOC 310Helix GLU 1328 A ARG 1331 A 1XPX
LOC 310Helix GLN 1347 A PHE 1351 A 1XPX
LOC 310Helix THR 1356 A ARG 1358 A 1XPX
LOC 310Helix ILE 1364 A GLY 1366 A 1XPX
LOC 310Helix ILE 1378 A ARG 1384 A 1XPX
LOC 310Helix GLU 1391 A LYS 1394 A 1XPX
LOC 310Helix PRO 1396 A PHE 1398 A 1XPX
LOC TurnI' THR 1249 A HIS 1252 A 1XPX
LOC TurnIV PRO 1250 A LEU 1253 A 1XPX
LOC TurnIV MET 1251 A ARG 1254 A 1XPX
LOC TurnIV HIS 1252 A LYS 1255 A 1XPX
LOC TurnIV LEU 1253 A ALA 1256 A 1XPX
LOC TurnIV ARG 1254 A LYS 1257 A 1XPX
LOC TurnIV LYS 1255 A LEU 1258 A 1XPX
LOC TurnIV VAL 1263 A PRO 1266 A 1XPX
LOC TurnIV SER 1267 A VAL 1270 A 1XPX
LOC TurnI' SER 1268 A LEU 1271 A 1XPX
LOC TurnIV ALA 1269 A LYS 1272 A 1XPX
LOC TurnI' PHE 1275 A ILE 1278 A 1XPX
LOC TurnIV ASN 1281 A ASN 1284 A 1XPX
LOC TurnIV LYS 1282 A THR 1285 A 1XPX
LOC TurnIV ASN 1283 A ALA 1286 A 1XPX
LOC TurnIV ASN 1284 A GLN 1287 A 1XPX
LOC TurnIV THR 1285 A LEU 1288 A 1XPX
LOC TurnIV ARG 1296 A TYR 1299 A 1XPX
LOC TurnIV GLU 1297 A TYR 1300 A 1XPX
LOC TurnI' PHE 1298 A ILE 1301 A 1XPX
LOC TurnIV TYR 1299 A GLN 1302 A 1XPX
LOC TurnI' TYR 1300 A MET 1303 A 1XPX
LOC TurnIV ILE 1301 A GLU 1304 A 1XPX
LOC TurnIV GLN 1302 A LYS 1305 A 1XPX
LOC TurnIV MET 1303 A TYR 1306 A 1XPX
LOC TurnIV GLU 1304 A ALA 1307 A 1XPX
LOC TurnIV LYS 1305 A ARG 1308 A 1XPX
LOC TurnIV TYR 1306 A GLN 1309 A 1XPX
LOC TurnIV ALA 1307 A ALA 1310 A 1XPX
LOC TurnIV ARG 1308 A VAL 1311 A 1XPX
LOC TurnIV GLN 1309 A THR 1312 A 1XPX
LOC TurnIV ALA 1310 A GLU 1313 A 1XPX
LOC TurnIV ARG 1331 A ASN 1334 A 1XPX
LOC TurnI' VAL 1332 A LEU 1335 A 1XPX
LOC TurnIV LEU 1333 A HIS 1336 A 1XPX
LOC TurnI' ASN 1334 A TYR 1337 A 1XPX
LOC TurnI' LEU 1335 A ASN 1338 A 1XPX
LOC TurnIV HIS 1336 A ARG 1339 A 1XPX
LOC TurnIV ASN 1338 A ASN 1341 A 1XPX
LOC TurnIV ASN 1341 A GLU 1344 A 1XPX
LOC TurnIV PHE 1351 A GLU 1354 A 1XPX
LOC TurnIV VAL 1352 A SER 1355 A 1XPX
LOC TurnIV VAL 1353 A THR 1356 A 1XPX
LOC TurnIV ARG 1358 A PHE 1361 A 1XPX
LOC TurnIV GLU 1359 A ARG 1362 A 1XPX
LOC TurnIV PHE 1360 A ALA 1363 A 1XPX
LOC TurnIV PHE 1361 A ILE 1364 A 1XPX
LOC TurnI' GLY 1367 A THR 1370 A 1XPX
LOC TurnIV LYS 1368 A GLU 1371 A 1XPX
LOC TurnIV GLU 1371 A TRP 1374 A 1XPX
LOC TurnI' SER 1373 A LYS 1376 A 1XPX
LOC TurnIV TRP 1374 A SER 1377 A 1XPX
LOC TurnIV LYS 1375 A ILE 1378 A 1XPX
REM 1XPX
REM --------------- Detailed secondary structure assignment------------- 1XPX
REM 1XPX
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1XPX
ASG SER A 1245 1 C Coil 360.00 -135.20 62.7 1XPX
ASG SER A 1246 2 C Coil 109.07 23.79 53.4 1XPX
ASG THR A 1247 3 C Coil 106.52 -146.50 97.2 1XPX
ASG LEU A 1248 4 C Coil 76.85 -114.87 21.4 1XPX
ASG THR A 1249 5 T Turn 85.12 -162.01 34.4 1XPX
ASG PRO A 1250 6 T Turn 57.87 13.45 112.2 1XPX
ASG MET A 1251 7 T Turn 84.17 38.19 77.5 1XPX
ASG HIS A 1252 8 T Turn 54.15 39.02 4.0 1XPX
ASG LEU A 1253 9 T Turn 70.22 52.20 51.5 1XPX
ASG ARG A 1254 10 T Turn 48.52 38.56 111.2 1XPX
ASG LYS A 1255 11 T Turn 68.92 51.49 11.1 1XPX
ASG ALA A 1256 12 T Turn 52.85 47.47 0.0 1XPX
ASG LYS A 1257 13 T Turn 54.37 41.92 33.7 1XPX
ASG LEU A 1258 14 G 310Helix 61.76 47.50 11.2 1XPX
ASG MET A 1259 15 G 310Helix 51.64 32.17 0.2 1XPX
ASG PHE A 1260 16 G 310Helix 55.25 19.22 0.0 1XPX
ASG PHE A 1261 17 G 310Helix 66.40 27.15 1.4 1XPX
ASG TRP A 1262 18 C Coil 104.04 29.78 19.8 1XPX
ASG VAL A 1263 19 T Turn 139.71 -127.53 8.8 1XPX
ASG ARG A 1264 20 T Turn 97.15 35.09 0.0 1XPX
ASG TYR A 1265 21 T Turn 121.20 -61.52 68.9 1XPX
ASG PRO A 1266 22 T Turn 67.67 -133.66 21.4 1XPX
ASG SER A 1267 23 T Turn 69.87 -144.98 56.9 1XPX
ASG SER A 1268 24 T Turn 58.07 27.14 53.6 1XPX
ASG ALA A 1269 25 T Turn 59.80 46.66 54.3 1XPX
ASG VAL A 1270 26 T Turn 73.05 37.69 46.3 1XPX
ASG LEU A 1271 27 T Turn 55.30 46.09 4.0 1XPX
ASG LYS A 1272 28 G 310Helix 54.49 56.41 93.2 1XPX
ASG MET A 1273 29 G 310Helix 43.35 40.20 104.1 1XPX
ASG TYR A 1274 30 G 310Helix 84.12 -2.25 21.0 1XPX
ASG PHE A 1275 31 T Turn 131.56 -50.24 0.6 1XPX
ASG PRO A 1276 32 T Turn 53.40 19.54 91.1 1XPX
ASG ASP A 1277 33 T Turn 82.25 11.20 65.1 1XPX
ASG ILE A 1278 34 T Turn 105.33 -131.81 9.3 1XPX
ASG LYS A 1279 35 C Coil 95.06 -99.73 133.6 1XPX
ASG PHE A 1280 36 C Coil 69.68 -170.98 41.8 1XPX
ASG ASN A 1281 37 T Turn 174.93 -163.69 72.5 1XPX
ASG LYS A 1282 38 T Turn 29.16 48.25 186.3 1XPX
ASG ASN A 1283 39 T Turn 67.07 83.48 125.1 1XPX
ASG ASN A 1284 40 T Turn 38.80 34.70 6.1 1XPX
ASG THR A 1285 41 T Turn 66.71 48.47 25.3 1XPX
ASG ALA A 1286 42 T Turn 57.54 42.73 61.1 1XPX
ASG GLN A 1287 43 T Turn 64.33 53.12 88.7 1XPX
ASG LEU A 1288 44 G 310Helix 53.38 43.55 1.0 1XPX
ASG VAL A 1289 45 G 310Helix 65.21 39.20 62.1 1XPX
ASG LYS A 1290 46 G 310Helix 61.02 40.52 120.6 1XPX
ASG TRP A 1291 47 G 310Helix 50.78 50.81 30.1 1XPX
ASG PHE A 1292 48 G 310Helix 65.32 32.50 3.6 1XPX
ASG SER A 1293 49 G 310Helix 62.16 40.01 37.7 1XPX
ASG ASN A 1294 50 G 310Helix 68.45 44.70 75.1 1XPX
ASG PHE A 1295 51 G 310Helix 58.77 39.49 7.0 1XPX
ASG ARG A 1296 52 G 310Helix 64.59 46.84 45.3 1XPX
ASG GLU A 1297 53 T Turn 59.49 53.41 118.9 1XPX
ASG PHE A 1298 54 T Turn 49.92 53.64 50.8 1XPX
ASG TYR A 1299 55 T Turn 51.31 54.02 0.0 1XPX
ASG TYR A 1300 56 T Turn 67.02 33.83 7.8 1XPX
ASG ILE A 1301 57 T Turn 59.28 44.70 79.9 1XPX
ASG GLN A 1302 58 T Turn 64.61 43.56 24.2 1XPX
ASG MET A 1303 59 T Turn 57.61 54.46 0.0 1XPX
ASG GLU A 1304 60 T Turn 59.96 31.29 27.5 1XPX
ASG LYS A 1305 61 T Turn 66.89 69.15 122.2 1XPX
ASG TYR A 1306 62 T Turn 44.62 47.12 66.2 1XPX
ASG ALA A 1307 63 T Turn 56.58 43.92 3.1 1XPX
ASG ARG A 1308 64 T Turn 70.53 48.58 89.6 1XPX
ASG GLN A 1309 65 T Turn 57.25 31.70 81.3 1XPX
ASG ALA A 1310 66 T Turn 70.53 50.80 33.5 1XPX
ASG VAL A 1311 67 T Turn 44.71 63.71 44.9 1XPX
ASG THR A 1312 68 T Turn 42.26 59.53 123.3 1XPX
ASG GLU A 1313 69 T Turn 62.44 360.00 175.4 1XPX
ASG SER A 1327 70 C Coil 360.00 148.11 90.1 1XPX
ASG GLU A 1328 71 G 310Helix 51.51 10.34 128.8 1XPX
ASG LEU A 1329 72 G 310Helix 54.09 29.95 14.3 1XPX
ASG TYR A 1330 73 G 310Helix 62.62 39.73 36.1 1XPX
ASG ARG A 1331 74 G 310Helix 49.97 42.19 139.2 1XPX
ASG VAL A 1332 75 T Turn 63.13 65.46 36.2 1XPX
ASG LEU A 1333 76 T Turn 52.51 45.72 0.4 1XPX
ASG ASN A 1334 77 T Turn 64.68 34.67 30.0 1XPX
ASG LEU A 1335 78 T Turn 66.26 48.84 75.7 1XPX
ASG HIS A 1336 79 T Turn 60.01 44.38 36.5 1XPX
ASG TYR A 1337 80 T Turn 103.18 18.56 4.9 1XPX
ASG ASN A 1338 81 T Turn 135.98 -38.98 4.5 1XPX
ASG ARG A 1339 82 T Turn 23.87 51.30 130.7 1XPX
ASG ASN A 1340 83 T Turn 103.22 -31.19 107.3 1XPX
ASG ASN A 1341 84 T Turn -35.65 -40.77 101.2 1XPX
ASG HIS A 1342 85 T Turn 55.08 30.99 87.2 1XPX
ASG ILE A 1343 86 T Turn 137.16 -170.00 26.2 1XPX
ASG GLU A 1344 87 T Turn 91.49 -129.36 166.7 1XPX
ASG VAL A 1345 88 C Coil 55.26 -111.78 20.4 1XPX
ASG PRO A 1346 89 C Coil 63.10 -131.73 17.5 1XPX
ASG GLN A 1347 90 G 310Helix 46.59 37.04 125.7 1XPX
ASG ASN A 1348 91 G 310Helix 52.96 45.36 63.1 1XPX
ASG PHE A 1349 92 G 310Helix 58.19 44.30 0.8 1XPX
ASG ARG A 1350 93 G 310Helix 61.76 23.33 84.7 1XPX
ASG PHE A 1351 94 G 310Helix 88.28 39.14 131.0 1XPX
ASG VAL A 1352 95 T Turn 57.72 44.96 2.6 1XPX
ASG VAL A 1353 96 T Turn 53.00 55.63 0.0 1XPX
ASG GLU A 1354 97 T Turn 54.96 44.46 86.1 1XPX
ASG SER A 1355 98 T Turn 57.82 44.90 16.7 1XPX
ASG THR A 1356 99 G 310Helix 64.74 46.41 0.0 1XPX
ASG LEU A 1357 100 G 310Helix 63.10 37.72 20.4 1XPX
ASG ARG A 1358 101 G 310Helix 61.38 42.59 186.9 1XPX
ASG GLU A 1359 102 T Turn 63.77 50.02 47.5 1XPX
ASG PHE A 1360 103 T Turn 59.31 49.28 0.2 1XPX
ASG PHE A 1361 104 T Turn 55.19 41.95 79.8 1XPX
ASG ARG A 1362 105 T Turn 61.85 50.54 105.9 1XPX
ASG ALA A 1363 106 T Turn 61.44 50.07 4.4 1XPX
ASG ILE A 1364 107 G 310Helix 62.39 54.45 13.4 1XPX
ASG GLN A 1365 108 G 310Helix 58.02 23.03 126.4 1XPX
ASG GLY A 1366 109 G 310Helix 96.50 -10.87 43.6 1XPX
ASG GLY A 1367 110 T Turn -56.58 -5.31 29.5 1XPX
ASG LYS A 1368 111 T Turn 69.34 -13.47 126.8 1XPX
ASG ASP A 1369 112 T Turn 97.83 -1.96 39.5 1XPX
ASG THR A 1370 113 T Turn 84.13 25.26 101.5 1XPX
ASG GLU A 1371 114 T Turn 72.72 -147.35 89.6 1XPX
ASG GLN A 1372 115 T Turn 66.46 -151.39 166.1 1XPX
ASG SER A 1373 116 T Turn -43.46 -45.04 91.9 1XPX
ASG TRP A 1374 117 T Turn 79.37 26.26 40.0 1XPX
ASG LYS A 1375 118 T Turn 63.04 28.71 53.3 1XPX
ASG LYS A 1376 119 T Turn 44.71 53.34 135.9 1XPX
ASG SER A 1377 120 T Turn 46.66 54.52 69.2 1XPX
ASG ILE A 1378 121 G 310Helix 53.61 45.19 1.2 1XPX
ASG TYR A 1379 122 G 310Helix 57.68 49.75 54.7 1XPX
ASG LYS A 1380 123 G 310Helix 55.94 38.74 146.2 1XPX
ASG ILE A 1381 124 G 310Helix 66.17 45.43 37.9 1XPX
ASG ILE A 1382 125 G 310Helix 69.28 29.13 0.0 1XPX
ASG SER A 1383 126 G 310Helix 61.74 20.28 43.8 1XPX
ASG ARG A 1384 127 G 310Helix 93.58 -6.09 161.7 1XPX
ASG MET A 1385 128 C Coil 100.71 -5.20 40.7 1XPX
ASG ASP A 1386 129 C Coil 58.52 -151.78 46.4 1XPX
ASG ASP A 1387 130 C Coil 120.62 -162.75 56.1 1XPX
ASG PRO A 1388 131 C Coil 68.46 -124.37 111.8 1XPX
ASG VAL A 1389 132 C Coil 66.35 -132.13 3.8 1XPX
ASG PRO A 1390 133 C Coil 44.48 -146.09 26.9 1XPX
ASG GLU A 1391 134 G 310Helix 61.32 41.08 124.9 1XPX
ASG TYR A 1392 135 G 310Helix 65.70 -1.41 112.3 1XPX
ASG PHE A 1393 136 G 310Helix 82.02 9.21 0.0 1XPX
ASG LYS A 1394 137 G 310Helix 89.76 27.35 70.7 1XPX
ASG SER A 1395 138 C Coil 57.12 -121.07 39.8 1XPX
ASG PRO A 1396 139 G 310Helix 49.22 37.39 106.6 1XPX
ASG ASN A 1397 140 G 310Helix 66.65 19.44 96.8 1XPX
ASG PHE A 1398 141 G 310Helix 67.90 55.21 21.5 1XPX
ASG LEU A 1399 142 C Coil 39.49 42.12 34.8 1XPX
ASG GLU A 1400 143 C Coil 56.00 133.90 126.3 1XPX
ASG GLN A 1401 144 C Coil -17.13 360.00 150.2 1XPX