Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1wd1.std.txt Дата изменения: Sat May 19 04:34:57 2012 Дата индексирования: Tue Oct 2 12:01:02 2012 Кодировка:

REM -------------------------------------------------------------------- 1WD1
REM 1WD1
REM STRIDE: Knowledge-based secondary structure assignment 1WD1
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1WD1
REM 1WD1
REM Residue accessible surface area calculation 1WD1
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1WD1
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1WD1
REM 1WD1
REM ------------------------ General information ----------------------- 1WD1
REM 1WD1
HDR STRUCTURAL PROTEIN/DNA 10-MAY-04 1WD1 1WD1
CMP MOL_ID: 1; 1WD1
CMP MOLECULE: 5'-D(*CP*CP*TP*AP*CP*GP*TP*AP*GP*G)-3'; 1WD1
CMP CHAIN: B, C; 1WD1
CMP ENGINEERED: YES; 1WD1
CMP MOL_ID: 2; 1WD1
CMP MOLECULE: DNA-BINDING PROTEINS 7A/7B/7D; 1WD1
CMP CHAIN: A; 1WD1
CMP SYNONYM: SAC7D CHROMOSOMAL PROTEIN, 7 KDA DNA-BINDING 1WD1
CMP PROTEINS A/B/D, SAC7A, SAC7B, SAC7D; 1WD1
CMP ENGINEERED: YES 1WD1
SRC MOL_ID: 1; 1WD1
SRC SYNTHETIC: YES; 1WD1
SRC MOL_ID: 2; 1WD1
SRC ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; 1WD1
SRC ORGANISM_TAXID: 2285; 1WD1
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); 1WD1
SRC EXPRESSION_SYSTEM_TAXID: 469008; 1WD1
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 1WD1
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1WD1
SRC EXPRESSION_SYSTEM_PLASMID: PET-3B 1WD1
AUT T.-P.KO,H.-M.CHU,C.-Y.CHEN,C.-C.CHOU,A.H.-J.WANG 1WD1
REM 1WD1
REM -------------------- Secondary structure summary ------------------- 1WD1
REM 1WD1
CHN /data/npidb/pdb/pdb_new/all/pdb1wd1.pdb A 1WD1
REM 1WD1
REM . . . . . 1WD1
SEQ 1 VKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAP 50 1WD1
STR EEEEEETTEEEEEEGGGEEEEEEETTEEEEEEEETTEEEEEEEEGGG 1WD1
REM 1WD1
REM . 1WD1
SEQ 51 KELLDMLARAEREK 64 1WD1
STR HHHHHHHHHHHH 1WD1
REM 1WD1
REM 1WD1
REM 1WD1
LOC AlphaHelix LYS 52 A ARG 63 A 1WD1
LOC 310Helix THR 17 A LYS 19 A 1WD1
LOC 310Helix GLU 47 A ASP 49 A 1WD1
LOC Strand LYS 3 A TYR 8 A 1WD1
LOC Strand GLU 11 A ASP 16 A 1WD1
LOC Strand ILE 20 A VAL 26 A 1WD1
LOC Strand MET 29 A ASP 36 A 1WD1
LOC Strand LYS 39 A SER 46 A 1WD1
LOC TurnIV LYS 7 A GLY 10 A 1WD1
LOC TurnI' TYR 8 A GLU 11 A 1WD1
LOC TurnII' VAL 26 A MET 29 A 1WD1
LOC TurnIV ASP 35 A GLY 38 A 1WD1
LOC TurnI' ASP 36 A LYS 39 A 1WD1
REM 1WD1
REM --------------- Detailed secondary structure assignment------------- 1WD1
REM 1WD1
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1WD1
ASG VAL A 2 1 C Coil 360.00 -5.70 145.1 1WD1
ASG LYS A 3 2 E Strand -121.70 166.28 91.5 1WD1
ASG VAL A 4 3 E Strand -82.79 132.15 1.6 1WD1
ASG LYS A 5 4 E Strand -108.45 126.11 124.4 1WD1
ASG PHE A 6 5 E Strand -149.24 -176.81 5.4 1WD1
ASG LYS A 7 6 E Strand -123.96 131.84 148.4 1WD1
ASG TYR A 8 7 E Strand -135.36 122.20 77.8 1WD1
ASG LYS A 9 8 T Turn 45.82 54.26 179.0 1WD1
ASG GLY A 10 9 T Turn 75.17 27.58 82.9 1WD1
ASG GLU A 11 10 E Strand -157.55 153.52 116.6 1WD1
ASG GLU A 12 11 E Strand -86.35 147.36 98.4 1WD1
ASG LYS A 13 12 E Strand -150.79 157.16 50.4 1WD1
ASG GLU A 14 13 E Strand -141.69 133.50 109.8 1WD1
ASG VAL A 15 14 E Strand -137.44 143.79 5.3 1WD1
ASG ASP A 16 15 E Strand -82.70 136.26 47.5 1WD1
ASG THR A 17 16 G 310Helix -49.56 -39.35 28.8 1WD1
ASG SER A 18 17 G 310Helix -54.26 -19.52 106.0 1WD1
ASG LYS A 19 18 G 310Helix -82.73 -5.38 72.9 1WD1
ASG ILE A 20 19 E Strand -74.60 140.86 22.5 1WD1
ASG LYS A 21 20 E Strand -99.33 -61.88 129.8 1WD1
ASG LYS A 22 21 E Strand -137.38 145.51 133.4 1WD1
ASG VAL A 23 22 E Strand -137.94 146.60 11.1 1WD1
ASG TRP A 24 23 E Strand -161.25 167.78 80.2 1WD1
ASG ARG A 25 24 E Strand -105.75 142.91 89.3 1WD1
ASG VAL A 26 25 E Strand -137.76 91.29 69.7 1WD1
ASG GLY A 27 26 T Turn 68.62 -128.88 65.9 1WD1
ASG LYS A 28 27 T Turn -91.47 -1.04 164.9 1WD1
ASG MET A 29 28 E Strand -87.02 138.36 78.5 1WD1
ASG VAL A 30 29 E Strand -102.38 113.56 0.0 1WD1
ASG SER A 31 30 E Strand -106.30 157.99 12.0 1WD1
ASG PHE A 32 31 E Strand -171.82 166.61 0.4 1WD1
ASG THR A 33 32 E Strand -114.97 158.44 21.2 1WD1
ASG TYR A 34 33 E Strand -154.90 148.77 22.6 1WD1
ASG ASP A 35 34 E Strand -70.91 127.48 70.1 1WD1
ASG ASP A 36 35 E Strand -128.77 70.04 67.6 1WD1
ASG ASN A 37 36 T Turn 72.40 25.03 152.6 1WD1
ASG GLY A 38 37 T Turn 104.61 -27.56 68.5 1WD1
ASG LYS A 39 38 E Strand -76.33 152.43 151.1 1WD1
ASG THR A 40 39 E Strand -109.95 103.64 71.2 1WD1
ASG GLY A 41 40 E Strand -75.76 168.15 10.7 1WD1
ASG ARG A 42 41 E Strand -131.16 135.44 116.8 1WD1
ASG GLY A 43 42 E Strand -151.16 157.63 1.7 1WD1
ASG ALA A 44 43 E Strand -148.00 144.53 30.5 1WD1
ASG VAL A 45 44 E Strand -147.02 156.46 13.3 1WD1
ASG SER A 46 45 E Strand -71.52 154.59 43.9 1WD1
ASG GLU A 47 46 G 310Helix -67.61 -25.38 65.3 1WD1
ASG LYS A 48 47 G 310Helix -68.86 -30.45 182.7 1WD1
ASG ASP A 49 48 G 310Helix -97.31 2.70 115.7 1WD1
ASG ALA A 50 49 C Coil -82.60 135.76 11.7 1WD1
ASG PRO A 51 50 C Coil -83.08 145.12 48.6 1WD1
ASG LYS A 52 51 H AlphaHelix -34.02 -70.95 150.9 1WD1
ASG GLU A 53 52 H AlphaHelix -31.11 -57.80 89.0 1WD1
ASG LEU A 54 53 H AlphaHelix -56.05 -44.60 0.2 1WD1
ASG LEU A 55 54 H AlphaHelix -59.55 -37.00 58.6 1WD1
ASG ASP A 56 55 H AlphaHelix -66.78 -35.07 68.3 1WD1
ASG MET A 57 56 H AlphaHelix -72.11 -39.85 40.7 1WD1
ASG LEU A 58 57 H AlphaHelix -59.14 -43.76 3.4 1WD1
ASG ALA A 59 58 H AlphaHelix -59.82 -59.75 48.2 1WD1
ASG ARG A 60 59 H AlphaHelix -48.35 -62.72 165.2 1WD1
ASG ALA A 61 60 H AlphaHelix -41.46 -46.28 40.8 1WD1
ASG GLU A 62 61 H AlphaHelix -64.20 -54.59 99.6 1WD1
ASG ARG A 63 62 H AlphaHelix -45.73 -52.95 196.0 1WD1
ASG GLU A 64 63 C Coil -73.35 -163.71 114.3 1WD1
ASG LYS A 65 64 C Coil 76.99 360.00 244.8 1WD1