Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1ec6.std.txt Дата изменения: Wed May 16 16:34:59 2012 Дата индексирования: Tue Oct 2 11:46:22 2012 Кодировка:

REM -------------------------------------------------------------------- 1EC6
REM 1EC6
REM STRIDE: Knowledge-based secondary structure assignment 1EC6
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1EC6
REM 1EC6
REM Residue accessible surface area calculation 1EC6
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1EC6
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1EC6
REM 1EC6
REM ------------------------ General information ----------------------- 1EC6
REM 1EC6
HDR RNA BINDING PROTEIN/RNA 25-JAN-00 1EC6 1EC6
CMP MOL_ID: 1; 1EC6
CMP MOLECULE: 20-MER RNA HAIRPIN; 1EC6
CMP CHAIN: C, D; 1EC6
CMP ENGINEERED: YES; 1EC6
CMP MOL_ID: 2; 1EC6
CMP MOLECULE: RNA-BINDING PROTEIN NOVA-2; 1EC6
CMP CHAIN: A, B; 1EC6
CMP FRAGMENT: KH3; 1EC6
CMP SYNONYM: ASTROCYTIC NOVA-LIKE RNA-BINDING PROTEIN; 1EC6
CMP ENGINEERED: YES 1EC6
SRC MOL_ID: 1; 1EC6
SRC SYNTHETIC: YES; 1EC6
SRC OTHER_DETAILS: PRODUCT OF SELEX PROTEIN BINDING STUDY; 1EC6
SRC MOL_ID: 2; 1EC6
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 1EC6
SRC ORGANISM_COMMON: HUMAN; 1EC6
SRC ORGANISM_TAXID: 9606; 1EC6
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1EC6
SRC EXPRESSION_SYSTEM_TAXID: 562 1EC6
AUT H.A.LEWIS,K.MUSUNURU,K.B.JENSEN,C.EDO,H.CHEN 1EC6
REM 1EC6
REM -------------------- Secondary structure summary ------------------- 1EC6
REM 1EC6
CHN /data/npidb/pdb/pdb_new/all/pdb1ec6.pdb A 1EC6
REM 1EC6
REM . . . . . 1EC6
SEQ 1 MKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRN 50 1EC6
STR TTEEEEEEEHHHHHHHH GGGHHHHHHHHHH EEEE TTTTBTTTT E 1EC6
REM 1EC6
REM . . . 1EC6
SEQ 51 RRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKV 87 1EC6
STR EEEEEE HHHHHHHHHHHHHHHHHHHHHHH 1EC6
REM 1EC6
CHN /data/npidb/pdb/pdb_new/all/pdb1ec6.pdb B 1EC6
REM 1EC6
REM . . . . . 1EC6
SEQ 1 MKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRN 50 1EC6
STR TTEEEEEEEHHHHHHHH GGGHHHHHHHHHH EEEE TTTTEETTT E 1EC6
REM 1EC6
REM . . . 1EC6
SEQ 51 RRVTITGSPAATQAAQYLISQRVTYEQGVRASNP 84 1EC6
STR EEEEEE HHHHHHHHHHHHHHHHHHHHHHHH 1EC6
REM 1EC6
REM 1EC6
REM 1EC6
LOC AlphaHelix GLU 14 A LEU 21 A 1EC6
LOC AlphaHelix LYS 26 A THR 35 A 1EC6
LOC AlphaHelix PRO 62 A ALA 84 A 1EC6
LOC AlphaHelix GLU 14 B LEU 21 B 1EC6
LOC AlphaHelix LYS 26 B THR 35 B 1EC6
LOC AlphaHelix PRO 62 B SER 85 B 1EC6
LOC 310Helix LYS 23 A GLY 25 A 1EC6
LOC 310Helix LYS 23 B GLY 25 B 1EC6
LOC Strand LEU 7 A PRO 13 A 1EC6
LOC Strand ARG 38 A ILE 41 A 1EC6
LOC Strand ASN 53 A THR 59 A 1EC6
LOC Strand LEU 7 B PRO 13 B 1EC6
LOC Strand ARG 38 B ILE 41 B 1EC6
LOC Strand PHE 47 B LEU 48 B 1EC6
LOC Strand ASN 53 B THR 59 B 1EC6
LOC TurnVIII LYS 5 A VAL 8 A 1EC6
LOC TurnII LYS 43 A GLU 46 A 1EC6
LOC TurnII LEU 48 A THR 51 A 1EC6
LOC TurnIV LYS 5 B VAL 8 B 1EC6
LOC TurnII LYS 43 B GLU 46 B 1EC6
LOC TurnII LEU 48 B THR 51 B 1EC6
REM 1EC6
REM --------------- Detailed secondary structure assignment------------- 1EC6
REM 1EC6
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1EC6
ASG MET A 4 1 C Coil 360.00 133.88 152.4 1EC6
ASG LYS A 5 2 T Turn -134.79 164.61 137.2 1EC6
ASG GLU A 6 3 T Turn -81.45 -13.68 132.9 1EC6
ASG LEU A 7 4 E Strand -136.05 113.93 76.6 1EC6
ASG VAL A 8 5 E Strand -119.38 147.77 15.9 1EC6
ASG GLU A 9 6 E Strand -129.38 144.75 104.5 1EC6
ASG ILE A 10 7 E Strand -136.03 158.75 37.6 1EC6
ASG ALA A 11 8 E Strand -117.32 116.27 52.7 1EC6
ASG VAL A 12 9 E Strand -112.55 119.90 5.6 1EC6
ASG PRO A 13 10 E Strand -43.27 147.71 45.5 1EC6
ASG GLU A 14 11 H AlphaHelix -61.64 -43.43 74.8 1EC6
ASG ASN A 15 12 H AlphaHelix -71.72 -2.27 114.4 1EC6
ASG LEU A 16 13 H AlphaHelix -114.34 -20.70 9.6 1EC6
ASG VAL A 17 14 H AlphaHelix -59.26 -33.91 3.8 1EC6
ASG GLY A 18 15 H AlphaHelix -62.37 -19.03 44.1 1EC6
ASG ALA A 19 16 H AlphaHelix -71.12 -26.73 13.0 1EC6
ASG ILE A 20 17 H AlphaHelix -97.41 -15.02 0.0 1EC6
ASG LEU A 21 18 H AlphaHelix -83.58 -54.28 54.1 1EC6
ASG GLY A 22 19 C Coil 78.18 166.40 22.5 1EC6
ASG LYS A 23 20 G 310Helix -51.88 118.40 180.0 1EC6
ASG GLY A 24 21 G 310Helix 65.17 11.07 90.6 1EC6
ASG GLY A 25 22 G 310Helix 83.74 12.61 15.8 1EC6
ASG LYS A 26 23 H AlphaHelix -62.81 -24.47 146.3 1EC6
ASG THR A 27 24 H AlphaHelix -79.33 -47.10 16.5 1EC6
ASG LEU A 28 25 H AlphaHelix -52.95 -52.28 16.6 1EC6
ASG VAL A 29 26 H AlphaHelix -55.35 -37.54 64.3 1EC6
ASG GLU A 30 27 H AlphaHelix -63.78 -49.26 80.6 1EC6
ASG TYR A 31 28 H AlphaHelix -62.58 -28.15 12.0 1EC6
ASG GLN A 32 29 H AlphaHelix -74.77 -41.41 49.6 1EC6
ASG GLU A 33 30 H AlphaHelix -65.81 -45.10 153.6 1EC6
ASG LEU A 34 31 H AlphaHelix -65.37 -35.11 46.5 1EC6
ASG THR A 35 32 H AlphaHelix -102.53 -24.98 3.2 1EC6
ASG GLY A 36 33 C Coil 83.49 3.48 63.7 1EC6
ASG ALA A 37 34 C Coil -98.82 159.94 5.3 1EC6
ASG ARG A 38 35 E Strand -102.76 125.96 128.6 1EC6
ASG ILE A 39 36 E Strand -108.71 128.59 7.4 1EC6
ASG GLN A 40 37 E Strand -126.93 121.69 94.7 1EC6
ASG ILE A 41 38 E Strand -104.24 144.51 18.7 1EC6
ASG SER A 42 39 C Coil -55.25 160.95 14.7 1EC6
ASG LYS A 43 40 T Turn -72.96 154.96 166.9 1EC6
ASG LYS A 44 41 T Turn -54.10 134.33 188.8 1EC6
ASG GLY A 45 42 T Turn 87.03 -6.50 58.0 1EC6
ASG GLU A 46 43 T Turn -101.91 105.85 107.7 1EC6
ASG PHE A 47 44 B Bridge -124.42 168.23 61.5 1EC6
ASG LEU A 48 45 T Turn -64.65 139.43 37.6 1EC6
ASG PRO A 49 46 T Turn -48.05 142.55 122.7 1EC6
ASG GLY A 50 47 T Turn 62.58 41.01 90.6 1EC6
ASG THR A 51 48 T Turn -170.77 174.75 55.2 1EC6
ASG ARG A 52 49 C Coil -122.60 40.68 189.4 1EC6
ASG ASN A 53 50 E Strand -107.31 127.36 40.7 1EC6
ASG ARG A 54 51 E Strand -80.96 142.55 14.8 1EC6
ASG ARG A 55 52 E Strand -87.00 127.73 86.8 1EC6
ASG VAL A 56 53 E Strand -110.23 116.69 0.0 1EC6
ASG THR A 57 54 E Strand -106.78 119.11 26.3 1EC6
ASG ILE A 58 55 E Strand -109.95 133.70 0.0 1EC6
ASG THR A 59 56 E Strand -138.89 151.94 36.2 1EC6
ASG GLY A 60 57 C Coil 149.00 -162.83 25.3 1EC6
ASG SER A 61 58 C Coil -61.52 156.55 54.5 1EC6
ASG PRO A 62 59 H AlphaHelix -55.67 -39.74 50.3 1EC6
ASG ALA A 63 60 H AlphaHelix -65.67 -39.75 25.3 1EC6
ASG ALA A 64 61 H AlphaHelix -72.44 -42.15 2.2 1EC6
ASG THR A 65 62 H AlphaHelix -66.88 -30.18 0.4 1EC6
ASG GLN A 66 63 H AlphaHelix -76.74 -36.53 28.7 1EC6
ASG ALA A 67 64 H AlphaHelix -71.58 -41.01 0.0 1EC6
ASG ALA A 68 65 H AlphaHelix -62.20 -49.56 0.0 1EC6
ASG GLN A 69 66 H AlphaHelix -62.41 -34.95 63.5 1EC6
ASG TYR A 70 67 H AlphaHelix -72.89 -42.60 22.3 1EC6
ASG LEU A 71 68 H AlphaHelix -66.60 -39.15 1.1 1EC6
ASG ILE A 72 69 H AlphaHelix -63.28 -53.97 0.2 1EC6
ASG SER A 73 70 H AlphaHelix -57.95 -41.89 40.7 1EC6
ASG GLN A 74 71 H AlphaHelix -60.10 -43.12 58.4 1EC6
ASG ARG A 75 72 H AlphaHelix -62.64 -41.14 63.9 1EC6
ASG VAL A 76 73 H AlphaHelix -69.05 -36.31 13.4 1EC6
ASG THR A 77 74 H AlphaHelix -71.85 -34.48 81.9 1EC6
ASG TYR A 78 75 H AlphaHelix -65.07 -50.54 146.2 1EC6
ASG GLU A 79 76 H AlphaHelix -52.04 -54.69 29.9 1EC6
ASG GLN A 80 77 H AlphaHelix -50.44 -43.56 101.0 1EC6
ASG GLY A 81 78 H AlphaHelix -61.46 -57.67 37.9 1EC6
ASG VAL A 82 79 H AlphaHelix -50.94 -39.39 42.6 1EC6
ASG ARG A 83 80 H AlphaHelix -74.87 -19.26 117.9 1EC6
ASG ALA A 84 81 H AlphaHelix -97.09 -3.66 89.4 1EC6
ASG SER A 85 82 C Coil -115.48 -40.42 87.2 1EC6
ASG ASN A 86 83 C Coil -98.09 159.79 98.4 1EC6
ASG PRO A 87 84 C Coil -80.40 135.38 122.2 1EC6
ASG GLN A 88 85 C Coil -75.31 120.13 175.4 1EC6
ASG LYS A 89 86 C Coil -67.74 144.96 197.1 1EC6
ASG VAL A 90 87 C Coil -144.01 360.00 187.8 1EC6
ASG MET B 4 1 C Coil 360.00 -138.09 131.3 1EC6
ASG LYS B 5 2 T Turn -93.17 129.87 55.6 1EC6
ASG GLU B 6 3 T Turn -98.31 7.95 55.9 1EC6
ASG LEU B 7 4 E Strand -150.65 118.94 95.0 1EC6
ASG VAL B 8 5 E Strand -123.74 148.53 20.4 1EC6
ASG GLU B 9 6 E Strand -129.72 130.14 107.4 1EC6
ASG ILE B 10 7 E Strand -122.40 145.94 34.5 1EC6
ASG ALA B 11 8 E Strand -105.21 121.39 46.4 1EC6
ASG VAL B 12 9 E Strand -120.03 121.93 3.4 1EC6
ASG PRO B 13 10 E Strand -45.68 147.92 40.3 1EC6
ASG GLU B 14 11 H AlphaHelix -61.01 -41.84 72.3 1EC6
ASG ASN B 15 12 H AlphaHelix -69.39 -8.33 108.5 1EC6
ASG LEU B 16 13 H AlphaHelix -107.23 -28.39 9.2 1EC6
ASG VAL B 17 14 H AlphaHelix -52.06 -34.55 4.0 1EC6
ASG GLY B 18 15 H AlphaHelix -61.94 -17.68 43.1 1EC6
ASG ALA B 19 16 H AlphaHelix -72.09 -24.10 11.0 1EC6
ASG ILE B 20 17 H AlphaHelix -101.48 -14.03 0.0 1EC6
ASG LEU B 21 18 H AlphaHelix -85.54 -49.12 52.3 1EC6
ASG GLY B 22 19 C Coil 74.31 173.46 24.3 1EC6
ASG LYS B 23 20 G 310Helix -55.28 119.60 182.8 1EC6
ASG GLY B 24 21 G 310Helix 64.87 11.73 88.4 1EC6
ASG GLY B 25 22 G 310Helix 90.09 -3.31 15.4 1EC6
ASG LYS B 26 23 H AlphaHelix -45.04 -35.11 149.9 1EC6
ASG THR B 27 24 H AlphaHelix -78.12 -44.69 19.7 1EC6
ASG LEU B 28 25 H AlphaHelix -55.93 -48.02 15.6 1EC6
ASG VAL B 29 26 H AlphaHelix -58.91 -38.32 62.1 1EC6
ASG GLU B 30 27 H AlphaHelix -60.63 -51.81 81.3 1EC6
ASG TYR B 31 28 H AlphaHelix -60.80 -32.99 13.6 1EC6
ASG GLN B 32 29 H AlphaHelix -70.15 -38.03 50.7 1EC6
ASG GLU B 33 30 H AlphaHelix -69.66 -43.76 148.0 1EC6
ASG LEU B 34 31 H AlphaHelix -64.28 -35.54 26.6 1EC6
ASG THR B 35 32 H AlphaHelix -104.49 -26.20 0.0 1EC6
ASG GLY B 36 33 C Coil 81.04 10.69 47.0 1EC6
ASG ALA B 37 34 C Coil -101.02 165.96 6.2 1EC6
ASG ARG B 38 35 E Strand -108.84 119.47 125.0 1EC6
ASG ILE B 39 36 E Strand -103.00 118.76 4.5 1EC6
ASG GLN B 40 37 E Strand -117.20 124.29 98.7 1EC6
ASG ILE B 41 38 E Strand -103.80 143.00 22.2 1EC6
ASG SER B 42 39 C Coil -55.70 159.82 15.0 1EC6
ASG LYS B 43 40 T Turn -70.61 159.02 161.5 1EC6
ASG LYS B 44 41 T Turn -54.61 134.48 187.5 1EC6
ASG GLY B 45 42 T Turn 77.02 15.32 58.9 1EC6
ASG GLU B 46 43 T Turn -111.63 83.93 100.6 1EC6
ASG PHE B 47 44 E Strand -109.27 160.49 65.8 1EC6
ASG LEU B 48 45 E Strand -54.71 151.14 37.9 1EC6
ASG PRO B 49 46 T Turn -58.16 126.56 116.2 1EC6
ASG GLY B 50 47 T Turn 78.32 8.64 93.6 1EC6
ASG THR B 51 48 T Turn -126.83 -177.00 55.9 1EC6
ASG ARG B 52 49 C Coil -129.90 43.58 188.1 1EC6
ASG ASN B 53 50 E Strand -110.18 122.50 45.5 1EC6
ASG ARG B 54 51 E Strand -78.78 148.31 16.2 1EC6
ASG ARG B 55 52 E Strand -94.38 127.37 79.1 1EC6
ASG VAL B 56 53 E Strand -109.75 117.88 0.0 1EC6
ASG THR B 57 54 E Strand -108.42 115.12 26.3 1EC6
ASG ILE B 58 55 E Strand -106.32 130.90 0.0 1EC6
ASG THR B 59 56 E Strand -137.25 148.33 33.1 1EC6
ASG GLY B 60 57 C Coil 153.53 -165.52 30.0 1EC6
ASG SER B 61 58 C Coil -61.63 156.58 58.5 1EC6
ASG PRO B 62 59 H AlphaHelix -54.63 -37.41 56.2 1EC6
ASG ALA B 63 60 H AlphaHelix -67.35 -38.13 38.3 1EC6
ASG ALA B 64 61 H AlphaHelix -75.08 -39.43 0.4 1EC6
ASG THR B 65 62 H AlphaHelix -71.21 -25.69 1.4 1EC6
ASG GLN B 66 63 H AlphaHelix -77.76 -46.71 42.5 1EC6
ASG ALA B 67 64 H AlphaHelix -60.23 -45.14 0.0 1EC6
ASG ALA B 68 65 H AlphaHelix -63.03 -46.21 0.2 1EC6
ASG GLN B 69 66 H AlphaHelix -63.59 -37.96 65.1 1EC6
ASG TYR B 70 67 H AlphaHelix -66.89 -44.28 40.6 1EC6
ASG LEU B 71 68 H AlphaHelix -67.97 -35.66 3.4 1EC6
ASG ILE B 72 69 H AlphaHelix -67.43 -54.44 0.4 1EC6
ASG SER B 73 70 H AlphaHelix -56.99 -40.69 39.5 1EC6
ASG GLN B 74 71 H AlphaHelix -60.40 -47.52 83.7 1EC6
ASG ARG B 75 72 H AlphaHelix -59.10 -42.58 65.5 1EC6
ASG VAL B 76 73 H AlphaHelix -68.76 -35.82 14.6 1EC6
ASG THR B 77 74 H AlphaHelix -70.51 -40.97 82.6 1EC6
ASG TYR B 78 75 H AlphaHelix -57.15 -53.16 143.7 1EC6
ASG GLU B 79 76 H AlphaHelix -51.19 -55.78 29.5 1EC6
ASG GLN B 80 77 H AlphaHelix -48.58 -43.90 99.3 1EC6
ASG GLY B 81 78 H AlphaHelix -60.51 -57.36 41.4 1EC6
ASG VAL B 82 79 H AlphaHelix -52.87 -35.08 70.1 1EC6
ASG ARG B 83 80 H AlphaHelix -77.65 -25.43 113.9 1EC6
ASG ALA B 84 81 H AlphaHelix -93.68 -7.48 81.5 1EC6
ASG SER B 85 82 H AlphaHelix -84.92 32.35 90.5 1EC6
ASG ASN B 86 83 C Coil -129.95 94.63 76.3 1EC6
ASG PRO B 87 84 C Coil -65.80 360.00 178.2 1EC6