Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1drz.std.txt Дата изменения: Tue Oct 2 13:06:02 2012 Дата индексирования: Sun Feb 3 22:23:24 2013 Кодировка:

REM -------------------------------------------------------------------- 1DRZ
REM 1DRZ
REM STRIDE: Knowledge-based secondary structure assignment 1DRZ
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1DRZ
REM 1DRZ
REM Residue accessible surface area calculation 1DRZ
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1DRZ
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1DRZ
REM 1DRZ
REM ------------------------ General information ----------------------- 1DRZ
REM 1DRZ
HDR RNA BINDING PROTEIN/RNA 01-SEP-98 1DRZ 1DRZ
CMP MOL_ID: 1; 1DRZ
CMP MOLECULE: RNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME); 1DRZ
CMP CHAIN: B; 1DRZ
CMP FRAGMENT: RIBOZYME DOMAIN; 1DRZ
CMP SYNONYM: HDV RIBOZYME, DELTA RIBOZYME; 1DRZ
CMP ENGINEERED: YES; 1DRZ
CMP OTHER_DETAILS: RNA IS THE PRODUCT OF SELF-CLEAVAGE. 1DRZ
CMP NUCLEOTIDES 146 - 159 INCLUSIVE ARE AN ENGINEERED COGNATE 1DRZ
CMP BINDING SITE FOR THE U1A PROTEIN; 1DRZ
CMP MOL_ID: 2; 1DRZ
CMP MOLECULE: PROTEIN (U1 SMALL RIBONUCLEOPROTEIN A); 1DRZ
CMP CHAIN: A; 1DRZ
CMP FRAGMENT: RNA BINDING DOMAIN; 1DRZ
CMP SYNONYM: U1A-RBD, U1SNRNP; 1DRZ
CMP ENGINEERED: YES; 1DRZ
CMP MUTATION: YES; 1DRZ
CMP OTHER_DETAILS: SELENOMETHIONYL PROTEIN 1DRZ
SRC MOL_ID: 1; 1DRZ
SRC ORGANISM_SCIENTIFIC: HEPATITIS DELTA VIRUS; 1DRZ
SRC ORGANISM_TAXID: 12475; 1DRZ
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1DRZ
SRC EXPRESSION_SYSTEM_TAXID: 562; 1DRZ
SRC EXPRESSION_SYSTEM_PLASMID: PDU9; 1DRZ
SRC OTHER_DETAILS: RNA PRODUCED BY IN VITRO RUN-OFF 1DRZ
SRC TRANSCRIPTION WITH BACTERIOPHAGE T7 RNA POLYMERASE FROM 1DRZ
SRC PLASMID DNA LINEARIZED WITH RESTRICTION ENZYME BSAI. T7 1DRZ
SRC TRANSCRIPT; 1DRZ
SRC MOL_ID: 2; 1DRZ
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 1DRZ
SRC ORGANISM_COMMON: HUMAN; 1DRZ
SRC ORGANISM_TAXID: 9606; 1DRZ
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1DRZ
SRC EXPRESSION_SYSTEM_TAXID: 562; 1DRZ
SRC EXPRESSION_SYSTEM_STRAIN: B834; 1DRZ
SRC EXPRESSION_SYSTEM_PLASMID: T7; 1DRZ
SRC OTHER_DETAILS: (A1-98 Y31H Q36R) T7 PLASMID EXPRESSED IN 1DRZ
SRC E. COLI STRAIN B834 GROWN IN MINIMAL MEDIUM SUPPLEMENTED 1DRZ
SRC WITH SELENOMETHIONINE; 1DRZ
AUT A.R.FERRE-D'AMARE,K.ZHOU,J.A.DOUDNA 1DRZ
REM 1DRZ
REM -------------------- Secondary structure summary ------------------- 1DRZ
REM 1DRZ
CHN /data/npidb/pdb/pdb_new/all/pdb1drz.pdb A 1DRZ
REM 1DRZ
REM . . . . . 1DRZ
SEQ 1 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKRGQ 50 1DRZ
STR EEEE TTTT HHHHHHHHHHHHGGG EEEEEE TTTT 1DRZ
REM 1DRZ
REM . . . . 1DRZ
SEQ 51 AFVIFKEVSSATNALRSQGFPFYDKPRIQYAKTDSDIIAKK 91 1DRZ
STR EEEEETTHHHHHHHHHH TBTTB EEE HHHHH 1DRZ
REM 1DRZ
REM 1DRZ
REM 1DRZ
LOC AlphaHelix LYS 23 A PHE 34 A 1DRZ
LOC AlphaHelix VAL 62 A SER 71 A 1DRZ
LOC AlphaHelix ASP 92 A LYS 96 A 1DRZ
LOC 310Helix SER 35 A PHE 37 A 1DRZ
LOC Strand THR 11 A ILE 14 A 1DRZ
LOC Strand ILE 40 A VAL 45 A 1DRZ
LOC Strand ALA 55 A PHE 59 A 1DRZ
LOC Strand ILE 84 A TYR 86 A 1DRZ
LOC TurnI ASN 18 A ILE 21 A 1DRZ
LOC TurnIV SER 48 A ARG 52 A 1DRZ
LOC TurnVIII PHE 59 A VAL 62 A 1DRZ
LOC TurnIV PRO 76 A ASP 79 A 1DRZ
LOC TurnI' PHE 77 A LYS 80 A 1DRZ
REM 1DRZ
REM --------------- Detailed secondary structure assignment------------- 1DRZ
REM 1DRZ
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1DRZ
ASG PRO A 4 1 C Coil 360.00 -129.41 161.8 1DRZ
ASG GLU A 5 2 C Coil 174.95 179.71 136.4 1DRZ
ASG THR A 6 3 C Coil -144.63 -165.62 48.4 1DRZ
ASG ARG A 7 4 C Coil -66.93 150.10 196.2 1DRZ
ASG PRO A 8 5 C Coil -49.87 154.70 76.6 1DRZ
ASG ASN A 9 6 C Coil -160.35 157.04 10.5 1DRZ
ASG HIS A 10 7 C Coil -67.49 -24.89 28.7 1DRZ
ASG THR A 11 8 E Strand -104.29 138.32 0.0 1DRZ
ASG ILE A 12 9 E Strand -108.18 137.04 0.0 1DRZ
ASG TYR A 13 10 E Strand -100.67 118.25 47.1 1DRZ
ASG ILE A 14 11 E Strand -109.91 136.41 7.0 1DRZ
ASG ASN A 15 12 C Coil -143.50 -178.81 27.2 1DRZ
ASG ASN A 16 13 C Coil 71.30 32.70 52.6 1DRZ
ASG LEU A 17 14 C Coil -90.85 147.78 10.2 1DRZ
ASG ASN A 18 15 T Turn -58.68 112.44 33.7 1DRZ
ASG GLU A 19 16 T Turn -70.03 -16.17 99.4 1DRZ
ASG LYS A 20 17 T Turn -77.77 -11.49 186.8 1DRZ
ASG ILE A 21 18 T Turn -85.89 131.48 19.9 1DRZ
ASG LYS A 22 19 C Coil -60.34 154.94 147.5 1DRZ
ASG LYS A 23 20 H AlphaHelix -52.66 -54.10 103.7 1DRZ
ASG ASP A 24 21 H AlphaHelix -60.22 -39.40 97.9 1DRZ
ASG GLU A 25 22 H AlphaHelix -71.61 -46.01 90.1 1DRZ
ASG LEU A 26 23 H AlphaHelix -54.55 -46.17 9.2 1DRZ
ASG LYS A 27 24 H AlphaHelix -55.44 -48.92 64.5 1DRZ
ASG LYS A 28 25 H AlphaHelix -65.11 -44.89 127.4 1DRZ
ASG SER A 29 26 H AlphaHelix -65.00 -25.27 30.0 1DRZ
ASG LEU A 30 27 H AlphaHelix -75.40 -40.52 1.8 1DRZ
ASG HIS A 31 28 H AlphaHelix -61.30 -43.49 99.0 1DRZ
ASG ALA A 32 29 H AlphaHelix -54.23 -44.96 70.7 1DRZ
ASG ILE A 33 30 H AlphaHelix -77.74 -36.74 57.4 1DRZ
ASG PHE A 34 31 H AlphaHelix -101.81 -12.91 16.2 1DRZ
ASG SER A 35 32 G 310Helix -57.13 -24.43 53.3 1DRZ
ASG ARG A 36 33 G 310Helix -68.00 -24.11 185.0 1DRZ
ASG PHE A 37 34 G 310Helix -77.80 -9.43 20.5 1DRZ
ASG GLY A 38 35 C Coil 147.24 -178.36 26.2 1DRZ
ASG GLN A 39 36 C Coil -68.09 140.53 111.1 1DRZ
ASG ILE A 40 37 E Strand -115.03 124.20 23.5 1DRZ
ASG LEU A 41 38 E Strand -76.52 -38.01 61.3 1DRZ
ASG ASP A 42 39 E Strand -177.52 166.57 65.2 1DRZ
ASG ILE A 43 40 E Strand -131.48 121.83 7.8 1DRZ
ASG LEU A 44 41 E Strand -106.84 125.26 71.3 1DRZ
ASG VAL A 45 42 E Strand -134.83 138.44 13.3 1DRZ
ASG SER A 46 43 C Coil -136.82 146.86 70.5 1DRZ
ASG ARG A 47 44 C Coil -107.75 12.87 110.2 1DRZ
ASG SER A 48 45 T Turn -61.66 166.52 61.1 1DRZ
ASG LEU A 49 46 T Turn -55.96 -35.72 120.8 1DRZ
ASG LYS A 50 47 T Turn -85.64 360.00 177.7 1DRZ
ASG ARG A 52 48 T Turn 360.00 150.45 104.9 1DRZ
ASG GLY A 53 49 C Coil 74.83 9.10 10.9 1DRZ
ASG GLN A 54 50 C Coil -128.75 155.52 55.8 1DRZ
ASG ALA A 55 51 E Strand -154.69 147.47 0.2 1DRZ
ASG PHE A 56 52 E Strand -116.39 118.39 77.0 1DRZ
ASG VAL A 57 53 E Strand -107.85 114.38 0.0 1DRZ
ASG ILE A 58 54 E Strand -94.49 107.61 1.2 1DRZ
ASG PHE A 59 55 E Strand -92.96 148.93 0.0 1DRZ
ASG LYS A 60 56 T Turn -70.33 -22.02 96.0 1DRZ
ASG GLU A 61 57 T Turn -132.51 132.37 111.7 1DRZ
ASG VAL A 62 58 H AlphaHelix -54.09 -31.32 46.1 1DRZ
ASG SER A 63 59 H AlphaHelix -63.85 -34.14 78.2 1DRZ
ASG SER A 64 60 H AlphaHelix -63.71 -48.71 13.3 1DRZ
ASG ALA A 65 61 H AlphaHelix -59.77 -39.98 0.0 1DRZ
ASG THR A 66 62 H AlphaHelix -64.41 -43.20 26.4 1DRZ
ASG ASN A 67 63 H AlphaHelix -70.90 -43.14 83.9 1DRZ
ASG ALA A 68 64 H AlphaHelix -60.75 -34.12 1.4 1DRZ
ASG LEU A 69 65 H AlphaHelix -71.07 -38.27 21.7 1DRZ
ASG ARG A 70 66 H AlphaHelix -75.30 -44.39 194.2 1DRZ
ASG SER A 71 67 H AlphaHelix -69.06 360.00 70.4 1DRZ
ASG GLN A 73 68 C Coil 360.00 120.28 97.8 1DRZ
ASG GLY A 74 69 C Coil 77.98 9.68 34.0 1DRZ
ASG PHE A 75 70 C Coil -61.38 127.07 118.2 1DRZ
ASG PRO A 76 71 T Turn -68.63 107.15 93.9 1DRZ
ASG PHE A 77 72 B Bridge -123.82 124.15 25.3 1DRZ
ASG TYR A 78 73 T Turn 50.66 40.76 55.9 1DRZ
ASG ASP A 79 74 T Turn 72.66 11.32 159.2 1DRZ
ASG LYS A 80 75 B Bridge -132.63 139.86 60.1 1DRZ
ASG PRO A 81 76 C Coil -67.53 360.00 81.5 1DRZ
ASG ARG A 83 77 C Coil 360.00 125.10 144.3 1DRZ
ASG ILE A 84 78 E Strand -122.47 140.46 14.5 1DRZ
ASG GLN A 85 79 E Strand -145.94 165.64 49.0 1DRZ
ASG TYR A 86 80 E Strand -76.28 147.84 20.1 1DRZ
ASG ALA A 87 81 C Coil -68.81 145.57 4.0 1DRZ
ASG LYS A 88 82 C Coil -65.63 -30.92 163.5 1DRZ
ASG THR A 89 83 C Coil -131.43 156.36 105.7 1DRZ
ASG ASP A 90 84 C Coil -67.77 148.52 65.5 1DRZ
ASG SER A 91 85 C Coil -84.15 153.42 21.1 1DRZ
ASG ASP A 92 86 H AlphaHelix -54.13 -38.34 130.7 1DRZ
ASG ILE A 93 87 H AlphaHelix -59.30 -35.41 85.3 1DRZ
ASG ILE A 94 88 H AlphaHelix -78.09 -39.79 13.2 1DRZ
ASG ALA A 95 89 H AlphaHelix -73.55 -36.00 58.1 1DRZ
ASG LYS A 96 90 H AlphaHelix -60.37 360.00 198.8 1DRZ
ASG LYS A 98 91 C Coil 360.00 360.00 221.2 1DRZ