Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1b01.std.txt Дата изменения: Mon Oct 1 22:13:07 2012 Дата индексирования: Tue Oct 2 11:44:31 2012 Кодировка:

REM -------------------------------------------------------------------- 1B01
REM 1B01
REM STRIDE: Knowledge-based secondary structure assignment 1B01
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1B01
REM 1B01
REM Residue accessible surface area calculation 1B01
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1B01
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1B01
REM 1B01
REM ------------------------ General information ----------------------- 1B01
REM 1B01
HDR GENE REGULATION/DNA 15-NOV-99 1B01 1B01
CMP MOL_ID: 1; 1B01
CMP MOLECULE: DNA (5'- 1B01
CMP D(*CP*CP*CP*GP*TP*GP*CP*AP*CP*TP*CP*AP*AP*TP*GP*CP*AP*AP*T) 1B01
CMP -3'); 1B01
CMP CHAIN: E; 1B01
CMP ENGINEERED: YES; 1B01
CMP MOL_ID: 2; 1B01
CMP MOLECULE: DNA (5'- 1B01
CMP D(*GP*AP*TP*TP*GP*CP*AP*TP*TP*GP*AP*GP*TP*GP*CP*AP*CP*GP*G) 1B01
CMP -3'); 1B01
CMP CHAIN: F; 1B01
CMP ENGINEERED: YES; 1B01
CMP MOL_ID: 3; 1B01
CMP MOLECULE: TRANSCRIPTIONAL REPRESSOR COPG; 1B01
CMP CHAIN: A, B; 1B01
CMP FRAGMENT: DNA-BINDING PROTEIN; 1B01
CMP SYNONYM: REPA PROTEIN; 1B01
CMP ENGINEERED: YES 1B01
SRC MOL_ID: 1; 1B01
SRC SYNTHETIC: YES; 1B01
SRC MOL_ID: 2; 1B01
SRC SYNTHETIC: YES; 1B01
SRC MOL_ID: 3; 1B01
SRC ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; 1B01
SRC ORGANISM_TAXID: 1311; 1B01
SRC STRAIN: PLS1; 1B01
SRC CELLULAR_LOCATION: PLASMID PMV158; 1B01
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1B01
SRC EXPRESSION_SYSTEM_TAXID: 562; 1B01
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1B01
SRC EXPRESSION_SYSTEM_PLASMID: PMV158 1B01
AUT F.X.GOMIS-RUETH,M.SOLA,P.ACEBO,A.PARRAGA,A.GUASCH,R.ERITJA, 1B01
AUT A.GONZALEZ,M.ESPINOSA,G.DEL SOLAR,M.COLL 1B01
REM 1B01
REM -------------------- Secondary structure summary ------------------- 1B01
REM 1B01
CHN /data/npidb/pdb/pdb_new/all/pdb1b01.pdb A 1B01
REM 1B01
REM . . . . 1B01
SEQ 1 MKKRLTITLSESVLENLEKMAREMGLSKSAMISVALENYKKGQ 43 1B01
STR EEEEEEEE HHHHHHHHHHHHHH HHHHHHHHHHHHHHH 1B01
REM 1B01
CHN /data/npidb/pdb/pdb_new/all/pdb1b01.pdb B 1B01
REM 1B01
REM . . . . 1B01
SEQ 1 MKKRLTITLSESVLENLEKMAREMGLSKSAMISVALENYKKGQ 43 1B01
STR EEEEEEEEHHHHHHHHHHHHH HHHHHHHHHHHHHHH 1B01
REM 1B01
REM 1B01
REM 1B01
LOC AlphaHelix GLU 11 A MET 24 A 1B01
LOC AlphaHelix LYS 28 A GLY 42 A 1B01
LOC AlphaHelix GLU 11 B GLU 23 B 1B01
LOC AlphaHelix LYS 28 B GLY 42 B 1B01
LOC Strand LYS 2 A LEU 9 A 1B01
LOC Strand LYS 3 B SER 10 B 1B01
REM 1B01
REM --------------- Detailed secondary structure assignment------------- 1B01
REM 1B01
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1B01
ASG MET A 1 1 C Coil 360.00 -26.93 193.1 1B01
ASG LYS A 2 2 E Strand -103.60 135.39 127.4 1B01
ASG LYS A 3 3 E Strand -127.25 147.03 83.6 1B01
ASG ARG A 4 4 E Strand -94.61 160.91 188.4 1B01
ASG LEU A 5 5 E Strand -171.10 143.71 25.5 1B01
ASG THR A 6 6 E Strand -111.28 123.84 61.2 1B01
ASG ILE A 7 7 E Strand -111.25 164.78 2.6 1B01
ASG THR A 8 8 E Strand -121.45 129.42 45.3 1B01
ASG LEU A 9 9 E Strand -135.69 155.13 2.4 1B01
ASG SER A 10 10 C Coil -58.00 135.79 48.2 1B01
ASG GLU A 11 11 H AlphaHelix -52.46 -22.38 87.3 1B01
ASG SER A 12 12 H AlphaHelix -92.50 -27.60 70.3 1B01
ASG VAL A 13 13 H AlphaHelix -77.78 -34.99 10.3 1B01
ASG LEU A 14 14 H AlphaHelix -71.03 -40.13 25.1 1B01
ASG GLU A 15 15 H AlphaHelix -64.19 -30.17 146.4 1B01
ASG ASN A 16 16 H AlphaHelix -77.69 -41.66 20.8 1B01
ASG LEU A 17 17 H AlphaHelix -48.59 -55.18 0.2 1B01
ASG GLU A 18 18 H AlphaHelix -38.88 -66.37 78.1 1B01
ASG LYS A 19 19 H AlphaHelix -49.66 -56.08 107.6 1B01
ASG MET A 20 20 H AlphaHelix -52.14 -55.20 14.1 1B01
ASG ALA A 21 21 H AlphaHelix -58.21 -44.20 4.4 1B01
ASG ARG A 22 22 H AlphaHelix -52.59 -55.86 168.4 1B01
ASG GLU A 23 23 H AlphaHelix -65.64 -24.60 131.2 1B01
ASG MET A 24 24 H AlphaHelix -93.79 1.29 84.2 1B01
ASG GLY A 25 25 C Coil 54.54 40.62 68.8 1B01
ASG LEU A 26 26 C Coil -114.26 163.33 57.0 1B01
ASG SER A 27 27 C Coil -87.32 162.88 69.0 1B01
ASG LYS A 28 28 H AlphaHelix -62.28 -42.53 56.3 1B01
ASG SER A 29 29 H AlphaHelix -56.37 -37.12 24.6 1B01
ASG ALA A 30 30 H AlphaHelix -78.24 -44.90 29.2 1B01
ASG MET A 31 31 H AlphaHelix -59.56 -48.74 0.2 1B01
ASG ILE A 32 32 H AlphaHelix -55.12 -53.31 1.1 1B01
ASG SER A 33 33 H AlphaHelix -52.09 -40.20 19.8 1B01
ASG VAL A 34 34 H AlphaHelix -66.89 -54.99 49.5 1B01
ASG ALA A 35 35 H AlphaHelix -56.42 -41.93 1.0 1B01
ASG LEU A 36 36 H AlphaHelix -60.09 -55.81 2.0 1B01
ASG GLU A 37 37 H AlphaHelix -49.59 -59.06 87.8 1B01
ASG ASN A 38 38 H AlphaHelix -39.49 -71.84 66.9 1B01
ASG TYR A 39 39 H AlphaHelix -41.73 -53.68 26.6 1B01
ASG LYS A 40 40 H AlphaHelix -44.65 -51.08 75.6 1B01
ASG LYS A 41 41 H AlphaHelix -54.08 -63.67 137.0 1B01
ASG GLY A 42 42 H AlphaHelix -53.01 -7.99 76.5 1B01
ASG GLN A 43 43 C Coil -88.29 360.00 141.4 1B01
ASG MET B 1 1 C Coil 360.00 113.45 185.5 1B01
ASG LYS B 2 2 C Coil -64.15 141.19 151.7 1B01
ASG LYS B 3 3 E Strand -129.55 157.41 114.4 1B01
ASG ARG B 4 4 E Strand -100.20 152.39 179.0 1B01
ASG LEU B 5 5 E Strand -146.85 122.83 26.0 1B01
ASG THR B 6 6 E Strand -92.82 120.17 81.2 1B01
ASG ILE B 7 7 E Strand -123.48 171.21 5.0 1B01
ASG THR B 8 8 E Strand -125.87 129.91 56.2 1B01
ASG LEU B 9 9 E Strand -129.43 146.92 0.0 1B01
ASG SER B 10 10 E Strand -69.53 125.61 29.3 1B01
ASG GLU B 11 11 H AlphaHelix -32.14 -51.32 84.4 1B01
ASG SER B 12 12 H AlphaHelix -63.40 -37.68 82.2 1B01
ASG VAL B 13 13 H AlphaHelix -75.40 -30.95 27.8 1B01
ASG LEU B 14 14 H AlphaHelix -71.93 -46.27 22.4 1B01
ASG GLU B 15 15 H AlphaHelix -54.61 -43.09 135.6 1B01
ASG ASN B 16 16 H AlphaHelix -77.55 -16.00 24.8 1B01
ASG LEU B 17 17 H AlphaHelix -70.95 -44.31 0.0 1B01
ASG GLU B 18 18 H AlphaHelix -60.24 -54.97 61.4 1B01
ASG LYS B 19 19 H AlphaHelix -46.62 -61.80 95.8 1B01
ASG MET B 20 20 H AlphaHelix -54.52 -38.88 4.4 1B01
ASG ALA B 21 21 H AlphaHelix -65.81 -48.94 6.0 1B01
ASG ARG B 22 22 H AlphaHelix -51.31 -65.81 171.9 1B01
ASG GLU B 23 23 H AlphaHelix -52.65 -13.12 123.4 1B01
ASG MET B 24 24 C Coil -111.92 3.53 73.1 1B01
ASG GLY B 25 25 C Coil 55.02 41.68 69.6 1B01
ASG LEU B 26 26 C Coil -130.66 164.71 64.3 1B01
ASG SER B 27 27 C Coil -84.08 163.86 70.4 1B01
ASG LYS B 28 28 H AlphaHelix -56.23 -50.12 76.7 1B01
ASG SER B 29 29 H AlphaHelix -50.18 -43.58 23.2 1B01
ASG ALA B 30 30 H AlphaHelix -65.97 -49.73 28.2 1B01
ASG MET B 31 31 H AlphaHelix -55.91 -60.41 0.0 1B01
ASG ILE B 32 32 H AlphaHelix -47.31 -43.30 0.9 1B01
ASG SER B 33 33 H AlphaHelix -64.04 -31.66 26.6 1B01
ASG VAL B 34 34 H AlphaHelix -70.79 -60.17 52.2 1B01
ASG ALA B 35 35 H AlphaHelix -48.38 -46.32 0.2 1B01
ASG LEU B 36 36 H AlphaHelix -59.22 -48.13 1.8 1B01
ASG GLU B 37 37 H AlphaHelix -69.47 -26.16 72.8 1B01
ASG ASN B 38 38 H AlphaHelix -68.03 -56.90 64.2 1B01
ASG TYR B 39 39 H AlphaHelix -48.56 -48.50 44.4 1B01
ASG LYS B 40 40 H AlphaHelix -52.57 -33.73 78.6 1B01
ASG LYS B 41 41 H AlphaHelix -73.53 -60.73 132.4 1B01
ASG GLY B 42 42 H AlphaHelix -45.60 -13.41 63.2 1B01
ASG GLN B 43 43 C Coil 91.92 360.00 170.8 1B01