Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1nwq.std.txt Дата изменения: Fri May 18 19:33:44 2012 Дата индексирования: Tue Oct 2 11:53:33 2012 Кодировка:

REM -------------------------------------------------------------------- 1NWQ
REM 1NWQ
REM STRIDE: Knowledge-based secondary structure assignment 1NWQ
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1NWQ
REM 1NWQ
REM Residue accessible surface area calculation 1NWQ
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1NWQ
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1NWQ
REM 1NWQ
REM ------------------------ General information ----------------------- 1NWQ
REM 1NWQ
HDR TRANSCRIPTION/DNA 06-FEB-03 1NWQ 1NWQ
CMP MOL_ID: 1; 1NWQ
CMP MOLECULE: 5'- 1NWQ
CMP D(*TP*TP*CP*CP*TP*AP*TP*TP*GP*CP*GP*CP*AP*AP*TP*CP*CP*AP*GP 1NWQ
CMP *TP*T)-3'; 1NWQ
CMP CHAIN: B; 1NWQ
CMP ENGINEERED: YES; 1NWQ
CMP MOL_ID: 2; 1NWQ
CMP MOLECULE: 5'- 1NWQ
CMP D(*AP*AP*AP*CP*TP*GP*GP*AP*TP*TP*GP*CP*GP*CP*AP*AP*TP*AP*GP 1NWQ
CMP *GP*A)-3'; 1NWQ
CMP CHAIN: D; 1NWQ
CMP ENGINEERED: YES; 1NWQ
CMP MOL_ID: 3; 1NWQ
CMP MOLECULE: CCAAT/ENHANCER BINDING PROTEIN ALPHA; 1NWQ
CMP CHAIN: A, C; 1NWQ
CMP FRAGMENT: BASIC REGION, LEUCINE ZIPPER DOMAIN; 1NWQ
CMP SYNONYM: C/EBP ALPHA, TRANSCRIPTION FACTOR C/EBPALPHA; 1NWQ
CMP ENGINEERED: YES 1NWQ
SRC MOL_ID: 1; 1NWQ
SRC SYNTHETIC: YES; 1NWQ
SRC MOL_ID: 2; 1NWQ
SRC SYNTHETIC: YES; 1NWQ
SRC MOL_ID: 3; 1NWQ
SRC ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; 1NWQ
SRC ORGANISM_COMMON: NORWAY RAT; 1NWQ
SRC ORGANISM_TAXID: 10116; 1NWQ
SRC GENE: CEBPA; 1NWQ
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1NWQ
SRC EXPRESSION_SYSTEM_TAXID: 562; 1NWQ
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1NWQ
SRC EXPRESSION_SYSTEM_PLASMID: PT5 1NWQ
AUT M.MILLER,J.D.SHUMAN,T.SEBASTIAN,Z.DAUTER,P.F.JOHNSON 1NWQ
REM 1NWQ
REM -------------------- Secondary structure summary ------------------- 1NWQ
REM 1NWQ
CHN /data/npidb/pdb/pdb_new/all/pdb1nwq.pdb A 1NWQ
REM 1NWQ
REM . . . . . 1NWQ
SEQ 1 NSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQ 50 1NWQ
STR GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH 1NWQ
REM 1NWQ
REM . 1NWQ
SEQ 51 LSRELDTLRG 60 1NWQ
STR HHHHHHHHH 1NWQ
REM 1NWQ
CHN /data/npidb/pdb/pdb_new/all/pdb1nwq.pdb C 1NWQ
REM 1NWQ
REM . . . . . 1NWQ
SEQ 1 NSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQ 50 1NWQ
STR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH 1NWQ
REM 1NWQ
REM . 1NWQ
SEQ 51 LSRELDTLRG 60 1NWQ
STR HHHHHHH 1NWQ
REM 1NWQ
REM 1NWQ
REM 1NWQ
LOC AlphaHelix TYR 285 A ARG 339 A 1NWQ
LOC AlphaHelix SER 282 C THR 337 C 1NWQ
LOC 310Helix SER 282 A GLU 284 A 1NWQ
REM 1NWQ
REM --------------- Detailed secondary structure assignment------------- 1NWQ
REM 1NWQ
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1NWQ
ASG ASN A 281 1 C Coil 360.00 3.31 125.3 1NWQ
ASG SER A 282 2 G 310Helix -70.08 -12.18 108.4 1NWQ
ASG ASN A 283 3 G 310Helix -73.36 -5.76 127.1 1NWQ
ASG GLU A 284 4 G 310Helix -102.00 -38.47 53.9 1NWQ
ASG TYR A 285 5 H AlphaHelix -25.72 -82.30 134.5 1NWQ
ASG ARG A 286 6 H AlphaHelix -39.77 -65.65 136.3 1NWQ
ASG VAL A 287 7 H AlphaHelix -43.39 -37.72 64.7 1NWQ
ASG ARG A 288 8 H AlphaHelix -75.43 -41.44 119.5 1NWQ
ASG ARG A 289 9 H AlphaHelix -52.45 -54.94 78.2 1NWQ
ASG GLU A 290 10 H AlphaHelix -59.83 -42.46 80.2 1NWQ
ASG ARG A 291 11 H AlphaHelix -57.04 -28.73 159.4 1NWQ
ASG ASN A 292 12 H AlphaHelix -83.71 -53.66 69.3 1NWQ
ASG ASN A 293 13 H AlphaHelix -53.43 -5.16 45.9 1NWQ
ASG ILE A 294 14 H AlphaHelix -104.23 -33.28 90.1 1NWQ
ASG ALA A 295 15 H AlphaHelix -71.82 -30.73 47.6 1NWQ
ASG VAL A 296 16 H AlphaHelix -67.56 -67.85 40.1 1NWQ
ASG ARG A 297 17 H AlphaHelix -35.26 -52.59 136.9 1NWQ
ASG LYS A 298 18 H AlphaHelix -54.10 -61.56 121.0 1NWQ
ASG SER A 299 19 H AlphaHelix -44.23 -59.13 63.3 1NWQ
ASG ARG A 300 20 H AlphaHelix -49.63 -68.45 175.0 1NWQ
ASG ASP A 301 21 H AlphaHelix -35.45 -44.70 92.1 1NWQ
ASG LYS A 302 22 H AlphaHelix -57.80 -62.26 110.2 1NWQ
ASG ALA A 303 23 H AlphaHelix -39.93 -68.24 26.5 1NWQ
ASG LYS A 304 24 H AlphaHelix -38.88 -54.36 139.4 1NWQ
ASG GLN A 305 25 H AlphaHelix -60.40 -38.14 89.6 1NWQ
ASG ARG A 306 26 H AlphaHelix -64.13 -24.94 140.1 1NWQ
ASG ASN A 307 27 H AlphaHelix -72.01 -55.05 54.7 1NWQ
ASG VAL A 308 28 H AlphaHelix -37.53 -55.86 63.8 1NWQ
ASG GLU A 309 29 H AlphaHelix -55.04 -54.53 113.6 1NWQ
ASG THR A 310 30 H AlphaHelix -53.75 -53.95 24.2 1NWQ
ASG GLN A 311 31 H AlphaHelix -44.10 -53.50 86.4 1NWQ
ASG GLN A 312 32 H AlphaHelix -52.77 -56.33 92.2 1NWQ
ASG LYS A 313 33 H AlphaHelix -49.99 -38.78 94.8 1NWQ
ASG VAL A 314 34 H AlphaHelix -50.86 -49.72 20.2 1NWQ
ASG LEU A 315 35 H AlphaHelix -62.27 -41.74 78.7 1NWQ
ASG GLU A 316 36 H AlphaHelix -60.13 -36.12 103.4 1NWQ
ASG LEU A 317 37 H AlphaHelix -76.40 -37.01 22.2 1NWQ
ASG THR A 318 38 H AlphaHelix -66.82 -18.62 52.9 1NWQ
ASG SER A 319 39 H AlphaHelix -75.49 -67.10 75.2 1NWQ
ASG ASP A 320 40 H AlphaHelix -41.88 -50.22 43.3 1NWQ
ASG ASN A 321 41 H AlphaHelix -49.08 -69.06 8.8 1NWQ
ASG ASP A 322 42 H AlphaHelix -50.02 -41.63 67.6 1NWQ
ASG ARG A 323 43 H AlphaHelix -41.45 -64.61 136.0 1NWQ
ASG LEU A 324 44 H AlphaHelix -57.03 -51.68 4.6 1NWQ
ASG ARG A 325 45 H AlphaHelix -45.91 -57.53 132.6 1NWQ
ASG LYS A 326 46 H AlphaHelix -55.26 -49.42 150.6 1NWQ
ASG ARG A 327 47 H AlphaHelix -51.25 -51.37 111.1 1NWQ
ASG VAL A 328 48 H AlphaHelix -61.53 -46.46 24.9 1NWQ
ASG GLU A 329 49 H AlphaHelix -49.46 -50.09 123.1 1NWQ
ASG GLN A 330 50 H AlphaHelix -52.79 -68.51 59.5 1NWQ
ASG LEU A 331 51 H AlphaHelix -40.99 -48.27 4.4 1NWQ
ASG SER A 332 52 H AlphaHelix -53.19 -57.35 43.2 1NWQ
ASG ARG A 333 53 H AlphaHelix -45.72 -40.29 125.2 1NWQ
ASG GLU A 334 54 H AlphaHelix -59.33 -61.76 59.9 1NWQ
ASG LEU A 335 55 H AlphaHelix -63.13 -34.95 5.8 1NWQ
ASG ASP A 336 56 H AlphaHelix -59.33 -33.05 105.5 1NWQ
ASG THR A 337 57 H AlphaHelix -73.31 -71.80 107.0 1NWQ
ASG LEU A 338 58 H AlphaHelix -35.35 -86.93 69.1 1NWQ
ASG ARG A 339 59 H AlphaHelix -42.17 -79.40 138.6 1NWQ
ASG GLY A 340 60 C Coil -67.97 360.00 122.6 1NWQ
ASG ASN C 281 1 C Coil 360.00 168.75 153.1 1NWQ
ASG SER C 282 2 H AlphaHelix -96.12 -70.65 79.8 1NWQ
ASG ASN C 283 3 H AlphaHelix -44.31 -27.26 96.5 1NWQ
ASG GLU C 284 4 H AlphaHelix -46.87 -60.78 75.4 1NWQ
ASG TYR C 285 5 H AlphaHelix -58.03 -64.56 127.9 1NWQ
ASG ARG C 286 6 H AlphaHelix -51.28 -20.60 131.6 1NWQ
ASG VAL C 287 7 H AlphaHelix -88.62 -34.43 67.9 1NWQ
ASG ARG C 288 8 H AlphaHelix -65.49 -27.95 149.7 1NWQ
ASG ARG C 289 9 H AlphaHelix -66.04 -62.71 73.7 1NWQ
ASG GLU C 290 10 H AlphaHelix -36.12 -54.20 82.6 1NWQ
ASG ARG C 291 11 H AlphaHelix -50.02 -55.38 168.1 1NWQ
ASG ASN C 292 12 H AlphaHelix -64.71 -35.39 67.7 1NWQ
ASG ASN C 293 13 H AlphaHelix -58.77 -32.73 40.8 1NWQ
ASG ILE C 294 14 H AlphaHelix -77.22 -43.21 73.2 1NWQ
ASG ALA C 295 15 H AlphaHelix -54.49 -40.90 52.9 1NWQ
ASG VAL C 296 16 H AlphaHelix -61.81 -49.18 49.5 1NWQ
ASG ARG C 297 17 H AlphaHelix -56.90 -61.44 128.8 1NWQ
ASG LYS C 298 18 H AlphaHelix -39.19 -64.80 125.3 1NWQ
ASG SER C 299 19 H AlphaHelix -53.96 -29.26 69.4 1NWQ
ASG ARG C 300 20 H AlphaHelix -77.29 -41.62 173.1 1NWQ
ASG ASP C 301 21 H AlphaHelix -61.40 -47.19 81.6 1NWQ
ASG LYS C 302 22 H AlphaHelix -52.36 -28.91 120.6 1NWQ
ASG ALA C 303 23 H AlphaHelix -80.36 -43.31 29.4 1NWQ
ASG LYS C 304 24 H AlphaHelix -47.96 -51.41 152.0 1NWQ
ASG GLN C 305 25 H AlphaHelix -43.55 -81.53 93.0 1NWQ
ASG ARG C 306 26 H AlphaHelix -32.81 -43.68 154.7 1NWQ
ASG ASN C 307 27 H AlphaHelix -60.98 -27.83 65.2 1NWQ
ASG VAL C 308 28 H AlphaHelix -80.98 -63.44 71.8 1NWQ
ASG GLU C 309 29 H AlphaHelix -20.44 -57.44 109.2 1NWQ
ASG THR C 310 30 H AlphaHelix -53.21 -54.87 26.5 1NWQ
ASG GLN C 311 31 H AlphaHelix -45.46 -57.60 79.4 1NWQ
ASG GLN C 312 32 H AlphaHelix -46.81 -58.85 101.8 1NWQ
ASG LYS C 313 33 H AlphaHelix -52.79 -44.69 111.0 1NWQ
ASG VAL C 314 34 H AlphaHelix -62.52 -4.86 8.8 1NWQ
ASG LEU C 315 35 H AlphaHelix -100.49 -40.98 96.9 1NWQ
ASG GLU C 316 36 H AlphaHelix -69.20 -22.20 84.6 1NWQ
ASG LEU C 317 37 H AlphaHelix -76.15 -47.05 14.6 1NWQ
ASG THR C 318 38 H AlphaHelix -60.32 -45.97 65.9 1NWQ
ASG SER C 319 39 H AlphaHelix -60.84 -56.06 57.3 1NWQ
ASG ASP C 320 40 H AlphaHelix -50.26 -61.90 47.9 1NWQ
ASG ASN C 321 41 H AlphaHelix -48.50 -45.78 1.2 1NWQ
ASG ASP C 322 42 H AlphaHelix -62.93 -46.60 84.8 1NWQ
ASG ARG C 323 43 H AlphaHelix -69.28 -7.21 130.7 1NWQ
ASG LEU C 324 44 H AlphaHelix -90.21 -26.81 23.9 1NWQ
ASG ARG C 325 45 H AlphaHelix -75.83 -35.75 93.8 1NWQ
ASG LYS C 326 46 H AlphaHelix -67.66 -23.36 139.2 1NWQ
ASG ARG C 327 47 H AlphaHelix -78.43 -38.40 127.0 1NWQ
ASG VAL C 328 48 H AlphaHelix -61.44 -47.85 30.5 1NWQ
ASG GLU C 329 49 H AlphaHelix -53.51 -56.01 114.7 1NWQ
ASG GLN C 330 50 H AlphaHelix -53.73 -65.47 77.2 1NWQ
ASG LEU C 331 51 H AlphaHelix -46.73 -33.17 8.8 1NWQ
ASG SER C 332 52 H AlphaHelix -66.92 -61.13 34.1 1NWQ
ASG ARG C 333 53 H AlphaHelix -46.73 -33.41 145.6 1NWQ
ASG GLU C 334 54 H AlphaHelix -65.63 -15.79 78.3 1NWQ
ASG LEU C 335 55 H AlphaHelix -99.28 -49.64 6.0 1NWQ
ASG ASP C 336 56 H AlphaHelix -44.80 -46.60 103.5 1NWQ
ASG THR C 337 57 H AlphaHelix -75.90 -30.45 112.1 1NWQ
ASG LEU C 338 58 C Coil -88.05 25.66 72.7 1NWQ
ASG ARG C 339 59 C Coil -127.84 -44.93 148.4 1NWQ
ASG GLY C 340 60 C Coil 141.37 360.00 123.6 1NWQ