Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3qmi.std.txt Дата изменения: Thu May 24 22:41:44 2012 Дата индексирования: Tue Oct 2 12:37:44 2012 Кодировка:

REM -------------------------------------------------------------------- 3QMI
REM 3QMI
REM STRIDE: Knowledge-based secondary structure assignment 3QMI
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3QMI
REM 3QMI
REM Residue accessible surface area calculation 3QMI
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3QMI
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3QMI
REM 3QMI
REM ------------------------ General information ----------------------- 3QMI
REM 3QMI
HDR DNA BINDING PROTEIN/DNA 04-FEB-11 3QMI 3QMI
CMP MOL_ID: 1; 3QMI
CMP MOLECULE: CPG-BINDING PROTEIN; 3QMI
CMP CHAIN: A; 3QMI
CMP FRAGMENT: CXXC-TYPE ZN FINGER, RESIDUES 161-222; 3QMI
CMP SYNONYM: CXXC-TYPE ZINC FINGER PROTEIN 1, PHD FINGER AND CXX 3QMI
CMP CONTAINING PROTEIN 1; 3QMI
CMP ENGINEERED: YES; 3QMI
CMP MOL_ID: 2; 3QMI
CMP MOLECULE: 5'-D(*GP*CP*CP*AP*AP*CP*GP*TP*TP*GP*GP*C)-3'; 3QMI
CMP CHAIN: B, C; 3QMI
CMP FRAGMENT: DNA (NONMETHYLATED CPG ISLAND); 3QMI
CMP ENGINEERED: YES 3QMI
SRC MOL_ID: 1; 3QMI
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 3QMI
SRC ORGANISM_COMMON: HUMAN; 3QMI
SRC ORGANISM_TAXID: 9606; 3QMI
SRC GENE: CFP1, CGBP, CXXC1, PCCX1, PHF18; 3QMI
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3QMI
SRC EXPRESSION_SYSTEM_TAXID: 511693; 3QMI
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 3QMI
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3QMI
SRC EXPRESSION_SYSTEM_PLASMID: BL21-V2R-PRARE2; 3QMI
SRC MOL_ID: 2; 3QMI
SRC SYNTHETIC: YES 3QMI
AUT C.XU,C.BIAN,F.MACKENZIE,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMITH, 3QMI
AUT A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS CONSORTIUM (SGC) 3QMI
REM 3QMI
REM -------------------- Secondary structure summary ------------------- 3QMI
REM 3QMI
CHN /data/npidb/pdb/pdb_new/all/pdb3qmi.pdb A 3QMI
REM 3QMI
REM . . . . . 3QMI
SEQ 1 ARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARES 50 3QMI
STR TTTTTTTHHHH TTTTHHHHH GGG TTTT GGG TTTTT GG 3QMI
REM 3QMI
REM 3QMI
SEQ 51 YK 52 3QMI
STR G 3QMI
REM 3QMI
REM 3QMI
REM 3QMI
LOC AlphaHelix GLU 173 A ARG 176 A 3QMI
LOC AlphaHelix ASP 185 A ASP 189 A 3QMI
LOC 310Helix LYS 191 A PHE 193 A 3QMI
LOC 310Helix ARG 204 A ARG 206 A 3QMI
LOC 310Helix GLU 214 A TYR 216 A 3QMI
LOC TurnIV ALA 166 A CYS 169 A 3QMI
LOC TurnIV CYS 169 A CYS 172 A 3QMI
LOC TurnIV CYS 181 A CYS 184 A 3QMI
LOC TurnIV ASN 197 A ARG 200 A 3QMI
LOC TurnIV CYS 208 A ARG 211 A 3QMI
LOC TurnI GLN 209 A ALA 212 A 3QMI
REM 3QMI
REM --------------- Detailed secondary structure assignment------------- 3QMI
REM 3QMI
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3QMI
ASG ALA A 166 1 T Turn 360.00 -62.30 104.7 3QMI
ASG ARG A 167 2 T Turn -102.78 11.73 122.1 3QMI
ASG MET A 168 3 T Turn -133.79 123.90 91.5 3QMI
ASG CYS A 169 4 T Turn -82.84 -22.35 27.9 3QMI
ASG GLY A 170 5 T Turn 78.13 3.95 48.3 3QMI
ASG GLU A 171 6 T Turn -141.07 14.44 148.5 3QMI
ASG CYS A 172 7 T Turn -93.49 173.12 11.4 3QMI
ASG GLU A 173 8 H AlphaHelix -55.62 -43.01 40.2 3QMI
ASG ALA A 174 9 H AlphaHelix -64.97 -42.99 3.8 3QMI
ASG CYS A 175 10 H AlphaHelix -64.25 -32.76 19.7 3QMI
ASG ARG A 176 11 H AlphaHelix -82.12 -13.51 157.7 3QMI
ASG ARG A 177 12 C Coil -64.62 138.58 116.3 3QMI
ASG THR A 178 13 C Coil -110.93 -11.64 115.0 3QMI
ASG GLU A 179 14 C Coil -116.42 123.78 154.6 3QMI
ASG ASP A 180 15 C Coil -65.57 143.47 36.0 3QMI
ASG CYS A 181 16 T Turn -73.46 -28.18 39.7 3QMI
ASG GLY A 182 17 T Turn 86.62 -1.48 16.4 3QMI
ASG HIS A 183 18 T Turn -131.55 -17.23 158.4 3QMI
ASG CYS A 184 19 T Turn -78.29 168.58 22.1 3QMI
ASG ASP A 185 20 H AlphaHelix -56.65 -40.74 83.7 3QMI
ASG PHE A 186 21 H AlphaHelix -67.65 -38.40 10.7 3QMI
ASG CYS A 187 22 H AlphaHelix -66.38 -47.75 0.0 3QMI
ASG ARG A 188 23 H AlphaHelix -59.51 -22.43 90.3 3QMI
ASG ASP A 189 24 H AlphaHelix -71.16 -29.80 9.9 3QMI
ASG MET A 190 25 C Coil -66.66 147.69 32.1 3QMI
ASG LYS A 191 26 G 310Helix -60.53 -30.11 77.5 3QMI
ASG LYS A 192 27 G 310Helix -68.24 -20.61 139.3 3QMI
ASG PHE A 193 28 G 310Helix -112.12 15.95 85.8 3QMI
ASG GLY A 194 29 C Coil 93.81 8.87 72.8 3QMI
ASG GLY A 195 30 C Coil -91.41 175.93 18.2 3QMI
ASG PRO A 196 31 C Coil -87.43 -2.67 104.4 3QMI
ASG ASN A 197 32 T Turn 55.48 46.77 72.7 3QMI
ASG LYS A 198 33 T Turn -102.26 -10.00 76.1 3QMI
ASG ILE A 199 34 T Turn -110.40 -54.65 87.1 3QMI
ASG ARG A 200 35 T Turn 66.62 44.65 175.5 3QMI
ASG GLN A 201 36 C Coil -116.99 161.32 67.9 3QMI
ASG LYS A 202 37 C Coil -56.91 148.55 61.1 3QMI
ASG CYS A 203 38 C Coil -33.56 135.53 0.0 3QMI
ASG ARG A 204 39 G 310Helix -53.41 -35.46 68.4 3QMI
ASG LEU A 205 40 G 310Helix -81.59 -8.16 85.7 3QMI
ASG ARG A 206 41 G 310Helix -109.05 13.18 63.4 3QMI
ASG GLN A 207 42 C Coil -82.38 115.81 12.9 3QMI
ASG CYS A 208 43 T Turn -47.23 127.15 0.0 3QMI
ASG GLN A 209 44 T Turn -66.00 -27.32 110.1 3QMI
ASG LEU A 210 45 T Turn -88.78 -51.51 125.3 3QMI
ASG ARG A 211 46 T Turn -99.58 -15.72 123.0 3QMI
ASG ALA A 212 47 T Turn -74.54 151.82 8.0 3QMI
ASG ARG A 213 48 C Coil -51.93 137.29 134.8 3QMI
ASG GLU A 214 49 G 310Helix -59.99 -35.03 84.8 3QMI
ASG SER A 215 50 G 310Helix -73.03 -11.72 85.7 3QMI
ASG TYR A 216 51 G 310Helix -87.12 -21.53 50.7 3QMI
ASG LYS A 217 52 C Coil -86.30 360.00 111.7 3QMI