Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3hhn.std.txt Дата изменения: Mon May 21 01:06:11 2012 Дата индексирования: Tue Oct 2 12:26:47 2012 Кодировка:

REM -------------------------------------------------------------------- 3HHN
REM 3HHN
REM STRIDE: Knowledge-based secondary structure assignment 3HHN
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3HHN
REM 3HHN
REM Residue accessible surface area calculation 3HHN
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3HHN
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3HHN
REM 3HHN
REM ------------------------ General information ----------------------- 3HHN
REM 3HHN
HDR LIGASE/RNA 15-MAY-09 3HHN 3HHN
CMP MOL_ID: 1; 3HHN
CMP MOLECULE: CLASS I LIGASE RIBOZYME, SELF-LIGATION PRODUCT; 3HHN
CMP CHAIN: C, E; 3HHN
CMP ENGINEERED: YES; 3HHN
CMP MOL_ID: 2; 3HHN
CMP MOLECULE: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A; 3HHN
CMP CHAIN: B, D; 3HHN
CMP FRAGMENT: RNA BINDING DOMAIN: UNP RESIDUES 1-100; 3HHN
CMP SYNONYM: U1 SNRNP PROTEIN A, U1A PROTEIN, U1-A; 3HHN
CMP ENGINEERED: YES; 3HHN
CMP MUTATION: YES 3HHN
SRC MOL_ID: 1; 3HHN
SRC SYNTHETIC: YES; 3HHN
SRC OTHER_DETAILS: SYNTHETIC CONSTRUCT TRANSCRIBED IN VITRO 3HHN
SRC USING T7 RNA POLYMERASE OFF OF A LINEARIZED PLASMID 3HHN
SRC PUC307HP; 3HHN
SRC MOL_ID: 2; 3HHN
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 3HHN
SRC ORGANISM_COMMON: HUMAN; 3HHN
SRC ORGANISM_TAXID: 9606; 3HHN
SRC GENE: SNRPA; 3HHN
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3HHN
SRC EXPRESSION_SYSTEM_TAXID: 562; 3HHN
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 3HHN
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3HHN
SRC EXPRESSION_SYSTEM_PLASMID: MODIFIED PET11A 3HHN
AUT D.M.SHECHNER,R.A.GRANT,S.C.BAGBY,D.P.BARTEL 3HHN
REM 3HHN
REM -------------------- Secondary structure summary ------------------- 3HHN
REM 3HHN
CHN /data/npidb/pdb/pdb_new/all/pdb3hhn.pdb B 3HHN
REM 3HHN
REM . . . . . 3HHN
SEQ 1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAF 50 3HHN
STR TTEEEEE TTTT HHHHHHHHHHHHGGG EEEEEE TTTTTTTEE 3HHN
REM 3HHN
REM . . . . 3HHN
SEQ 51 VIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMK 92 3HHN
STR EEETTHHHHHHHHHHHTTEEETTEEEEEEETTTT HHHHH 3HHN
REM 3HHN
CHN /data/npidb/pdb/pdb_new/all/pdb3hhn.pdb D 3HHN
REM 3HHN
REM . . . . . 3HHN
SEQ 1 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQA 50 3HHN
STR TTEEEEE TTTT HHHHHHHHHHHHGGG EEEEEE TTTTTTTE 3HHN
REM 3HHN
REM . . . . 3HHN
SEQ 51 FVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMK 93 3HHN
STR EEEETTHHHHHHHHHHHTTEEETTEEEEEEETTTT HHHHH 3HHN
REM 3HHN
REM 3HHN
REM 3HHN
LOC AlphaHelix LYS 23 B PHE 34 B 3HHN
LOC AlphaHelix VAL 62 B MET 72 B 3HHN
LOC AlphaHelix ASP 92 B LYS 96 B 3HHN
LOC AlphaHelix LYS 23 D PHE 34 D 3HHN
LOC AlphaHelix VAL 62 D MET 72 D 3HHN
LOC AlphaHelix ASP 92 D LYS 96 D 3HHN
LOC 310Helix SER 35 B PHE 37 B 3HHN
LOC 310Helix SER 35 D PHE 37 D 3HHN
LOC Strand THR 11 B ASN 15 B 3HHN
LOC Strand ILE 40 B VAL 45 B 3HHN
LOC Strand ALA 55 B PHE 59 B 3HHN
LOC Strand PHE 75 B PHE 77 B 3HHN
LOC Strand LYS 80 B TYR 86 B 3HHN
LOC Strand THR 11 D ASN 15 D 3HHN
LOC Strand ILE 40 D VAL 45 D 3HHN
LOC Strand ALA 55 D PHE 59 D 3HHN
LOC Strand PHE 75 D PHE 77 D 3HHN
LOC Strand LYS 80 D TYR 86 D 3HHN
LOC TurnVIII ASN 9 B ILE 12 B 3HHN
LOC TurnI ASN 18 B ILE 21 B 3HHN
LOC TurnI SER 48 B MET 51 B 3HHN
LOC TurnIV LEU 49 B ARG 52 B 3HHN
LOC TurnII MET 51 B GLN 54 B 3HHN
LOC TurnVIII PHE 59 B VAL 62 B 3HHN
LOC TurnII MET 72 B PHE 75 B 3HHN
LOC TurnIV PRO 76 B ASP 79 B 3HHN
LOC TurnI' PHE 77 B LYS 80 B 3HHN
LOC TurnVIII ALA 87 B ASP 90 B 3HHN
LOC GammaInv PHE 75 B PHE 77 B 3HHN
LOC TurnVIII ASN 9 D ILE 12 D 3HHN
LOC TurnI ASN 18 D ILE 21 D 3HHN
LOC TurnI SER 48 D MET 51 D 3HHN
LOC TurnIV LEU 49 D ARG 52 D 3HHN
LOC TurnII MET 51 D GLN 54 D 3HHN
LOC TurnVIII PHE 59 D VAL 62 D 3HHN
LOC TurnII MET 72 D PHE 75 D 3HHN
LOC TurnIV PRO 76 D ASP 79 D 3HHN
LOC TurnI' PHE 77 D LYS 80 D 3HHN
LOC TurnVIII ALA 87 D ASP 90 D 3HHN
LOC GammaInv PHE 75 D PHE 77 D 3HHN
REM 3HHN
REM --------------- Detailed secondary structure assignment------------- 3HHN
REM 3HHN
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3HHN
ASG ARG B 7 1 C Coil 360.00 154.07 262.8 3HHN
ASG PRO B 8 2 C Coil -42.32 157.24 73.6 3HHN
ASG ASN B 9 3 T Turn -161.71 137.57 8.7 3HHN
ASG HIS B 10 4 T Turn -46.93 -35.41 46.7 3HHN
ASG THR B 11 5 E Strand -105.26 129.88 0.0 3HHN
ASG ILE B 12 6 E Strand -103.21 142.51 0.0 3HHN
ASG TYR B 13 7 E Strand -101.35 125.83 42.5 3HHN
ASG ILE B 14 8 E Strand -120.61 137.16 0.0 3HHN
ASG ASN B 15 9 E Strand -139.57 -168.80 47.7 3HHN
ASG ASN B 16 10 C Coil 62.58 30.75 42.8 3HHN
ASG LEU B 17 11 C Coil -86.24 146.22 2.1 3HHN
ASG ASN B 18 12 T Turn -58.51 101.85 45.0 3HHN
ASG GLU B 19 13 T Turn -64.62 -15.86 105.2 3HHN
ASG LYS B 20 14 T Turn -78.31 -6.25 98.0 3HHN
ASG ILE B 21 15 T Turn -83.42 133.55 26.0 3HHN
ASG LYS B 22 16 C Coil -61.64 148.70 124.1 3HHN
ASG LYS B 23 17 H AlphaHelix -55.93 -45.70 108.3 3HHN
ASG ASP B 24 18 H AlphaHelix -56.24 -58.67 121.0 3HHN
ASG GLU B 25 19 H AlphaHelix -54.92 -52.15 93.4 3HHN
ASG LEU B 26 20 H AlphaHelix -50.82 -42.77 9.0 3HHN
ASG LYS B 27 21 H AlphaHelix -56.05 -58.84 68.0 3HHN
ASG LYS B 28 22 H AlphaHelix -68.45 -36.86 139.5 3HHN
ASG SER B 29 23 H AlphaHelix -62.73 -43.39 27.0 3HHN
ASG LEU B 30 24 H AlphaHelix -63.39 -47.56 0.2 3HHN
ASG HIS B 31 25 H AlphaHelix -60.46 -33.06 86.8 3HHN
ASG ALA B 32 26 H AlphaHelix -65.59 -38.29 70.5 3HHN
ASG ILE B 33 27 H AlphaHelix -92.06 -15.87 33.1 3HHN
ASG PHE B 34 28 H AlphaHelix -102.83 -17.34 0.2 3HHN
ASG SER B 35 29 G 310Helix -55.91 -33.51 44.8 3HHN
ASG ARG B 36 30 G 310Helix -65.93 -2.50 176.6 3HHN
ASG PHE B 37 31 G 310Helix -103.65 -8.15 17.0 3HHN
ASG GLY B 38 32 C Coil 139.58 -167.38 30.8 3HHN
ASG GLN B 39 33 C Coil -68.67 144.59 116.2 3HHN
ASG ILE B 40 34 E Strand -127.68 106.18 28.8 3HHN
ASG LEU B 41 35 E Strand -63.23 -51.09 65.4 3HHN
ASG ASP B 42 36 E Strand -163.91 169.48 61.2 3HHN
ASG ILE B 43 37 E Strand -145.07 105.19 8.0 3HHN
ASG LEU B 44 38 E Strand -83.32 132.67 73.4 3HHN
ASG VAL B 45 39 E Strand -144.59 121.08 13.1 3HHN
ASG SER B 46 40 C Coil -121.96 149.98 43.2 3HHN
ASG ARG B 47 41 C Coil -111.32 29.65 106.0 3HHN
ASG SER B 48 42 T Turn -59.01 179.92 57.9 3HHN
ASG LEU B 49 43 T Turn -72.81 -21.99 148.2 3HHN
ASG LYS B 50 44 T Turn -106.43 -20.90 116.1 3HHN
ASG MET B 51 45 T Turn -113.16 -1.77 73.2 3HHN
ASG ARG B 52 46 T Turn -69.64 162.38 91.0 3HHN
ASG GLY B 53 47 T Turn 63.08 13.98 10.3 3HHN
ASG GLN B 54 48 T Turn -133.44 160.06 37.6 3HHN
ASG ALA B 55 49 E Strand -159.38 143.44 0.6 3HHN
ASG PHE B 56 50 E Strand -113.85 120.16 60.5 3HHN
ASG VAL B 57 51 E Strand -108.14 126.11 0.8 3HHN
ASG ILE B 58 52 E Strand -108.86 116.08 1.2 3HHN
ASG PHE B 59 53 E Strand -97.29 157.08 0.0 3HHN
ASG LYS B 60 54 T Turn -80.88 -23.49 92.6 3HHN
ASG GLU B 61 55 T Turn -114.29 144.22 103.6 3HHN
ASG VAL B 62 56 H AlphaHelix -69.57 -37.88 52.6 3HHN
ASG SER B 63 57 H AlphaHelix -64.43 -37.73 82.5 3HHN
ASG SER B 64 58 H AlphaHelix -54.38 -47.49 13.3 3HHN
ASG ALA B 65 59 H AlphaHelix -61.70 -43.17 0.0 3HHN
ASG THR B 66 60 H AlphaHelix -60.61 -49.88 51.8 3HHN
ASG ASN B 67 61 H AlphaHelix -60.68 -31.81 64.9 3HHN
ASG ALA B 68 62 H AlphaHelix -78.17 -41.60 0.0 3HHN
ASG LEU B 69 63 H AlphaHelix -60.43 -34.47 27.7 3HHN
ASG ARG B 70 64 H AlphaHelix -79.98 -55.27 177.5 3HHN
ASG SER B 71 65 H AlphaHelix -82.96 -4.50 61.7 3HHN
ASG MET B 72 66 H AlphaHelix -112.78 -15.20 8.4 3HHN
ASG GLN B 73 67 T Turn -50.66 125.90 92.9 3HHN
ASG GLY B 74 68 T Turn 89.05 -13.28 13.7 3HHN
ASG PHE B 75 69 E Strand -43.81 131.86 80.9 3HHN
ASG PRO B 76 70 E Strand -72.36 80.34 43.3 3HHN
ASG PHE B 77 71 E Strand -90.80 116.79 10.8 3HHN
ASG TYR B 78 72 T Turn 52.19 43.53 74.5 3HHN
ASG ASP B 79 73 T Turn 67.93 34.12 119.5 3HHN
ASG LYS B 80 74 E Strand -151.68 128.61 68.0 3HHN
ASG PRO B 81 75 E Strand -60.58 122.05 10.4 3HHN
ASG MET B 82 76 E Strand -67.12 149.61 1.4 3HHN
ASG ARG B 83 77 E Strand -126.67 87.52 104.2 3HHN
ASG ILE B 84 78 E Strand -89.80 134.58 4.0 3HHN
ASG GLN B 85 79 E Strand -137.49 171.14 109.4 3HHN
ASG TYR B 86 80 E Strand -80.49 144.74 59.9 3HHN
ASG ALA B 87 81 T Turn -66.51 137.69 10.4 3HHN
ASG LYS B 88 82 T Turn -70.01 -19.49 107.0 3HHN
ASG THR B 89 83 T Turn -142.66 153.38 109.0 3HHN
ASG ASP B 90 84 T Turn -65.36 149.88 96.8 3HHN
ASG SER B 91 85 C Coil -80.41 156.68 21.7 3HHN
ASG ASP B 92 86 H AlphaHelix -58.63 -40.90 139.4 3HHN
ASG ILE B 93 87 H AlphaHelix -59.06 -29.95 89.9 3HHN
ASG ILE B 94 88 H AlphaHelix -93.60 -40.37 14.9 3HHN
ASG ALA B 95 89 H AlphaHelix -58.52 -42.08 63.5 3HHN
ASG LYS B 96 90 H AlphaHelix -91.21 42.91 93.3 3HHN
ASG MET B 97 91 C Coil -145.09 -32.95 119.3 3HHN
ASG LYS B 98 92 C Coil -152.50 360.00 140.7 3HHN
ASG THR D 6 1 C Coil 360.00 124.65 175.9 3HHN
ASG ARG D 7 2 C Coil -103.04 152.17 183.5 3HHN
ASG PRO D 8 3 C Coil -47.39 157.07 74.2 3HHN
ASG ASN D 9 4 T Turn -161.64 137.41 7.9 3HHN
ASG HIS D 10 5 T Turn -46.34 -35.67 46.9 3HHN
ASG THR D 11 6 E Strand -105.23 130.02 0.0 3HHN
ASG ILE D 12 7 E Strand -103.46 142.44 0.0 3HHN
ASG TYR D 13 8 E Strand -101.19 126.13 44.9 3HHN
ASG ILE D 14 9 E Strand -121.04 137.11 0.0 3HHN
ASG ASN D 15 10 E Strand -139.75 -169.02 47.7 3HHN
ASG ASN D 16 11 C Coil 62.74 30.97 42.3 3HHN
ASG LEU D 17 12 C Coil -86.44 146.54 2.9 3HHN
ASG ASN D 18 13 T Turn -58.47 101.32 44.6 3HHN
ASG GLU D 19 14 T Turn -64.00 -16.04 105.7 3HHN
ASG LYS D 20 15 T Turn -78.59 -5.87 97.3 3HHN
ASG ILE D 21 16 T Turn -83.68 133.65 26.6 3HHN
ASG LYS D 22 17 C Coil -61.73 148.39 123.5 3HHN
ASG LYS D 23 18 H AlphaHelix -55.60 -45.42 33.6 3HHN
ASG ASP D 24 19 H AlphaHelix -56.60 -58.77 126.0 3HHN
ASG GLU D 25 20 H AlphaHelix -54.82 -52.37 94.0 3HHN
ASG LEU D 26 21 H AlphaHelix -50.52 -42.66 9.2 3HHN
ASG LYS D 27 22 H AlphaHelix -56.12 -58.93 76.2 3HHN
ASG LYS D 28 23 H AlphaHelix -68.48 -37.01 142.6 3HHN
ASG SER D 29 24 H AlphaHelix -62.48 -43.67 27.1 3HHN
ASG LEU D 30 25 H AlphaHelix -63.26 -47.59 0.2 3HHN
ASG HIS D 31 26 H AlphaHelix -60.53 -33.10 86.6 3HHN
ASG ALA D 32 27 H AlphaHelix -65.58 -38.13 69.2 3HHN
ASG ILE D 33 28 H AlphaHelix -92.20 -15.95 33.5 3HHN
ASG PHE D 34 29 H AlphaHelix -102.60 -17.33 0.2 3HHN
ASG SER D 35 30 G 310Helix -55.81 -33.44 43.5 3HHN
ASG ARG D 36 31 G 310Helix -66.04 -2.43 178.5 3HHN
ASG PHE D 37 32 G 310Helix -103.62 -8.11 16.6 3HHN
ASG GLY D 38 33 C Coil 139.67 -167.70 31.1 3HHN
ASG GLN D 39 34 C Coil -68.66 144.27 116.2 3HHN
ASG ILE D 40 35 E Strand -127.34 106.53 29.2 3HHN
ASG LEU D 41 36 E Strand -63.33 -50.93 66.0 3HHN
ASG ASP D 42 37 E Strand -164.22 169.83 60.9 3HHN
ASG ILE D 43 38 E Strand -145.54 105.31 8.0 3HHN
ASG LEU D 44 39 E Strand -83.48 132.54 72.6 3HHN
ASG VAL D 45 40 E Strand -144.46 121.28 33.3 3HHN
ASG SER D 46 41 C Coil -122.21 149.74 46.4 3HHN
ASG ARG D 47 42 C Coil -111.22 29.56 106.5 3HHN
ASG SER D 48 43 T Turn -58.96 -179.88 59.5 3HHN
ASG LEU D 49 44 T Turn -72.65 -22.54 147.4 3HHN
ASG LYS D 50 45 T Turn -105.38 -21.21 163.9 3HHN
ASG MET D 51 46 T Turn -113.01 -2.00 66.5 3HHN
ASG ARG D 52 47 T Turn -69.45 162.85 92.2 3HHN
ASG GLY D 53 48 T Turn 62.72 14.17 10.3 3HHN
ASG GLN D 54 49 T Turn -133.98 160.42 38.4 3HHN
ASG ALA D 55 50 E Strand -159.93 143.08 0.8 3HHN
ASG PHE D 56 51 E Strand -113.71 120.41 60.9 3HHN
ASG VAL D 57 52 E Strand -108.17 126.15 1.0 3HHN
ASG ILE D 58 53 E Strand -108.81 116.36 0.8 3HHN
ASG PHE D 59 54 E Strand -97.48 157.00 0.0 3HHN
ASG LYS D 60 55 T Turn -80.69 -23.56 94.4 3HHN
ASG GLU D 61 56 T Turn -114.08 144.51 102.2 3HHN
ASG VAL D 62 57 H AlphaHelix -69.64 -38.06 53.0 3HHN
ASG SER D 63 58 H AlphaHelix -64.24 -37.97 82.4 3HHN
ASG SER D 64 59 H AlphaHelix -54.27 -47.65 13.3 3HHN
ASG ALA D 65 60 H AlphaHelix -61.70 -43.11 0.0 3HHN
ASG THR D 66 61 H AlphaHelix -60.29 -50.13 51.6 3HHN
ASG ASN D 67 62 H AlphaHelix -60.49 -31.97 64.1 3HHN
ASG ALA D 68 63 H AlphaHelix -78.21 -41.68 0.0 3HHN
ASG LEU D 69 64 H AlphaHelix -60.26 -34.51 27.7 3HHN
ASG ARG D 70 65 H AlphaHelix -80.08 -55.20 179.9 3HHN
ASG SER D 71 66 H AlphaHelix -82.93 -4.32 61.1 3HHN
ASG MET D 72 67 H AlphaHelix -112.85 -14.90 9.0 3HHN
ASG GLN D 73 68 T Turn -50.68 125.89 95.1 3HHN
ASG GLY D 74 69 T Turn 89.00 -13.25 18.2 3HHN
ASG PHE D 75 70 E Strand -43.93 131.78 78.7 3HHN
ASG PRO D 76 71 E Strand -72.38 80.58 42.3 3HHN
ASG PHE D 77 72 E Strand -91.09 116.39 11.0 3HHN
ASG TYR D 78 73 T Turn 52.68 43.24 73.5 3HHN
ASG ASP D 79 74 T Turn 68.21 34.61 103.9 3HHN
ASG LYS D 80 75 E Strand -152.70 128.24 69.1 3HHN
ASG PRO D 81 76 E Strand -60.32 122.24 16.6 3HHN
ASG MET D 82 77 E Strand -67.81 150.38 1.8 3HHN
ASG ARG D 83 78 E Strand -127.96 88.21 115.7 3HHN
ASG ILE D 84 79 E Strand -90.70 134.88 3.5 3HHN
ASG GLN D 85 80 E Strand -137.55 171.09 108.4 3HHN
ASG TYR D 86 81 E Strand -80.48 144.87 39.0 3HHN
ASG ALA D 87 82 T Turn -66.37 137.09 10.5 3HHN
ASG LYS D 88 83 T Turn -69.38 -19.75 94.9 3HHN
ASG THR D 89 84 T Turn -142.64 153.35 109.3 3HHN
ASG ASP D 90 85 T Turn -65.16 149.82 96.1 3HHN
ASG SER D 91 86 C Coil -80.41 156.57 21.9 3HHN
ASG ASP D 92 87 H AlphaHelix -58.64 -40.96 141.2 3HHN
ASG ILE D 93 88 H AlphaHelix -59.05 -29.76 87.7 3HHN
ASG ILE D 94 89 H AlphaHelix -93.77 -40.55 15.3 3HHN
ASG ALA D 95 90 H AlphaHelix -58.37 -41.95 62.9 3HHN
ASG LYS D 96 91 H AlphaHelix -91.28 42.73 93.0 3HHN
ASG MET D 97 92 C Coil -145.07 -32.78 119.4 3HHN
ASG LYS D 98 93 C Coil -152.50 360.00 141.3 3HHN