Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3g97.std.txt Дата изменения: Sun May 20 22:40:17 2012 Дата индексирования: Tue Oct 2 12:25:43 2012 Кодировка:

REM -------------------------------------------------------------------- 3G97
REM 3G97
REM STRIDE: Knowledge-based secondary structure assignment 3G97
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3G97
REM 3G97
REM Residue accessible surface area calculation 3G97
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3G97
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3G97
REM 3G97
REM ------------------------ General information ----------------------- 3G97
REM 3G97
HDR TRANSCRIPTION/DNA 13-FEB-09 3G97 3G97
CMP MOL_ID: 1; 3G97
CMP MOLECULE: GLUCOCORTICOID RECEPTOR; 3G97
CMP CHAIN: B, A; 3G97
CMP FRAGMENT: UNP RESIDUES 440-525; 3G97
CMP SYNONYM: GR, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 1; 3G97
CMP ENGINEERED: YES; 3G97
CMP MOL_ID: 2; 3G97
CMP MOLECULE: DNA (5'- 3G97
CMP D(*TP*GP*GP*AP*AP*CP*CP*CP*AP*AP*TP*GP*TP*TP*CP*T)-3'); 3G97
CMP CHAIN: C; 3G97
CMP ENGINEERED: YES; 3G97
CMP OTHER_DETAILS: GLUCOCORTICOID RECEPTOR BINDING SITE:GILZ 3G97
CMP TOP STRAND; 3G97
CMP MOL_ID: 3; 3G97
CMP MOLECULE: DNA (5'- 3G97
CMP D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*GP*GP*GP*TP*TP*CP*C)-3'); 3G97
CMP CHAIN: D; 3G97
CMP ENGINEERED: YES; 3G97
CMP OTHER_DETAILS: GLUCOCORTICOID RECEPTOR BINDING SITE:GILZ 3G97
CMP BOTTOM STRAND 3G97
SRC MOL_ID: 1; 3G97
SRC ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; 3G97
SRC ORGANISM_COMMON: BROWN RAT,RAT,RATS; 3G97
SRC ORGANISM_TAXID: 10116; 3G97
SRC GENE: GRL, NR3C1; 3G97
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3G97
SRC EXPRESSION_SYSTEM_TAXID: 562; 3G97
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; 3G97
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3G97
SRC EXPRESSION_SYSTEM_PLASMID: PET28A; 3G97
SRC MOL_ID: 2; 3G97
SRC SYNTHETIC: YES; 3G97
SRC MOL_ID: 3; 3G97
SRC SYNTHETIC: YES 3G97
AUT M.A.PUFALL,K.R.YAMAMOTO,S.H.MEIJSING 3G97
REM 3G97
REM -------------------- Secondary structure summary ------------------- 3G97
REM 3G97
CHN /data/npidb/pdb/pdb_new/all/pdb3g97.pdb B 3G97
REM 3G97
REM . . . . . 3G97
SEQ 1 HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKI 50 3G97
STR BTTTTTTBT EEETTEEE HHHHHHHHHHHH TTTT TTT 3G97
REM 3G97
REM . . 3G97
SEQ 51 RRKNCPACRYRKCLQAGMNLEA 72 3G97
STR TTTTTHHHHHHHHHHH 3G97
REM 3G97
CHN /data/npidb/pdb/pdb_new/all/pdb3g97.pdb A 3G97
REM 3G97
REM . . . . . 3G97
SEQ 1 HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKI 50 3G97
STR BTTTTT B EEETTEEE HHHHHHHHHHHH TTTT TTT 3G97
REM 3G97
REM . . 3G97
SEQ 51 RRKNCPACRYRKCLQAGMNLEAR 73 3G97
STR GGGTTHHHHHHHHHHH TTTT 3G97
REM 3G97
REM 3G97
REM 3G97
LOC AlphaHelix GLY 458 B GLU 469 B 3G97
LOC AlphaHelix PRO 493 B ALA 503 B 3G97
LOC AlphaHelix GLY 458 A GLU 469 A 3G97
LOC AlphaHelix PRO 493 A ALA 503 A 3G97
LOC 310Helix ARG 488 A LYS 490 A 3G97
LOC Strand GLY 449 B HIS 451 B 3G97
LOC Strand VAL 454 B THR 456 B 3G97
LOC Strand GLY 449 A HIS 451 A 3G97
LOC Strand VAL 454 A THR 456 A 3G97
LOC TurnIV CYS 440 B CYS 443 B 3G97
LOC TurnIV LEU 441 B SER 444 B 3G97
LOC TurnIV CYS 450 B GLY 453 B 3G97
LOC TurnI' HIS 451 B VAL 454 B 3G97
LOC TurnIV CYS 476 B ARG 479 B 3G97
LOC TurnI ASP 485 B ARG 488 B 3G97
LOC TurnI LYS 486 B ARG 489 B 3G97
LOC TurnIV ILE 487 B LYS 490 B 3G97
LOC TurnI ARG 488 B ASN 491 B 3G97
LOC TurnI ARG 489 B CYS 492 B 3G97
LOC TurnVIII LYS 490 B PRO 493 B 3G97
LOC GammaInv ASP 445 B ALA 447 B 3G97
LOC TurnIV CYS 440 A CYS 443 A 3G97
LOC TurnI LEU 441 A SER 444 A 3G97
LOC TurnIV CYS 450 A GLY 453 A 3G97
LOC TurnI' HIS 451 A VAL 454 A 3G97
LOC TurnIV CYS 476 A ARG 479 A 3G97
LOC TurnIV ASP 485 A ARG 488 A 3G97
LOC TurnVIII LYS 490 A PRO 493 A 3G97
LOC TurnI ASN 506 A ALA 509 A 3G97
REM 3G97
REM --------------- Detailed secondary structure assignment------------- 3G97
REM 3G97
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3G97
ASG HIS B 438 1 C Coil 360.00 52.40 188.8 3G97
ASG MET B 439 2 B Bridge -125.06 112.28 123.9 3G97
ASG CYS B 440 3 T Turn -60.49 134.31 0.5 3G97
ASG LEU B 441 4 T Turn -71.76 -4.84 106.3 3G97
ASG VAL B 442 5 T Turn -110.48 -66.31 0.0 3G97
ASG CYS B 443 6 T Turn -102.11 17.30 0.3 3G97
ASG SER B 444 7 T Turn 37.86 52.16 56.7 3G97
ASG ASP B 445 8 T Turn -120.05 -144.71 28.0 3G97
ASG GLU B 446 9 B Bridge -68.90 82.39 119.0 3G97
ASG ALA B 447 10 T Turn -65.47 121.65 2.6 3G97
ASG SER B 448 11 C Coil -130.75 80.58 63.0 3G97
ASG GLY B 449 12 E Strand 64.30 171.32 44.9 3G97
ASG CYS B 450 13 E Strand -79.09 102.43 106.7 3G97
ASG HIS B 451 14 E Strand -95.63 140.21 45.6 3G97
ASG TYR B 452 15 T Turn 39.71 35.19 61.2 3G97
ASG GLY B 453 16 T Turn 96.09 9.30 54.9 3G97
ASG VAL B 454 17 E Strand -151.45 144.15 7.8 3G97
ASG LEU B 455 18 E Strand -66.19 115.48 62.1 3G97
ASG THR B 456 19 E Strand -147.42 161.15 0.0 3G97
ASG CYS B 457 20 C Coil -71.76 169.84 2.6 3G97
ASG GLY B 458 21 H AlphaHelix -70.84 -33.52 31.6 3G97
ASG SER B 459 22 H AlphaHelix -69.12 -35.08 38.8 3G97
ASG CYS B 460 23 H AlphaHelix -77.98 -26.47 0.0 3G97
ASG LYS B 461 24 H AlphaHelix -53.38 -67.10 77.8 3G97
ASG VAL B 462 25 H AlphaHelix -56.10 -43.99 49.1 3G97
ASG PHE B 463 26 H AlphaHelix -54.60 -43.43 22.3 3G97
ASG PHE B 464 27 H AlphaHelix -65.69 -47.83 2.4 3G97
ASG LYS B 465 28 H AlphaHelix -61.04 -38.95 83.8 3G97
ASG ARG B 466 29 H AlphaHelix -68.15 -41.89 160.6 3G97
ASG ALA B 467 30 H AlphaHelix -59.30 -49.45 6.9 3G97
ASG VAL B 468 31 H AlphaHelix -74.88 -46.13 50.0 3G97
ASG GLU B 469 32 H AlphaHelix -60.99 -72.81 102.9 3G97
ASG GLY B 470 33 C Coil -66.87 176.00 33.3 3G97
ASG GLN B 471 34 C Coil -124.50 124.84 178.9 3G97
ASG HIS B 472 35 C Coil -125.70 178.51 83.2 3G97
ASG ASN B 473 36 C Coil -124.73 112.10 149.3 3G97
ASG TYR B 474 37 C Coil -91.67 125.77 58.6 3G97
ASG LEU B 475 38 C Coil -131.87 133.22 88.0 3G97
ASG CYS B 476 39 T Turn -68.76 141.28 8.5 3G97
ASG ALA B 477 40 T Turn -99.47 -1.40 4.0 3G97
ASG GLY B 478 41 T Turn -111.50 -105.99 21.5 3G97
ASG ARG B 479 42 T Turn -137.89 20.43 118.7 3G97
ASG ASN B 480 43 C Coil 67.43 29.61 103.4 3G97
ASG ASP B 481 44 C Coil -149.71 46.97 129.3 3G97
ASG CYS B 482 45 C Coil -72.34 156.48 12.9 3G97
ASG ILE B 483 46 C Coil -75.94 114.58 76.2 3G97
ASG ILE B 484 47 C Coil -106.48 90.99 8.1 3G97
ASG ASP B 485 48 T Turn -117.93 -165.86 35.3 3G97
ASG LYS B 486 49 T Turn -64.86 -41.04 110.4 3G97
ASG ILE B 487 50 T Turn -83.56 -35.98 121.3 3G97
ASG ARG B 488 51 T Turn -97.18 2.39 47.3 3G97
ASG ARG B 489 52 T Turn -70.48 -24.98 37.7 3G97
ASG LYS B 490 53 T Turn -67.02 -32.57 168.7 3G97
ASG ASN B 491 54 T Turn -63.97 -36.96 25.5 3G97
ASG CYS B 492 55 T Turn -135.19 94.33 3.4 3G97
ASG PRO B 493 56 H AlphaHelix -72.67 -24.25 23.9 3G97
ASG ALA B 494 57 H AlphaHelix -58.45 -58.25 16.2 3G97
ASG CYS B 495 58 H AlphaHelix -64.32 -43.14 0.0 3G97
ASG ARG B 496 59 H AlphaHelix -54.26 -49.63 21.0 3G97
ASG TYR B 497 60 H AlphaHelix -60.67 -42.77 61.9 3G97
ASG ARG B 498 61 H AlphaHelix -62.33 -44.71 66.0 3G97
ASG LYS B 499 62 H AlphaHelix -62.77 -29.59 56.3 3G97
ASG CYS B 500 63 H AlphaHelix -67.48 -59.28 0.0 3G97
ASG LEU B 501 64 H AlphaHelix -51.54 -39.96 84.0 3G97
ASG GLN B 502 65 H AlphaHelix -91.76 -1.07 128.0 3G97
ASG ALA B 503 66 H AlphaHelix -93.10 5.77 27.5 3G97
ASG GLY B 504 67 C Coil 103.84 -10.25 49.8 3G97
ASG MET B 505 68 C Coil -54.78 136.36 6.6 3G97
ASG ASN B 506 69 C Coil -165.03 134.82 91.4 3G97
ASG LEU B 507 70 C Coil -82.53 176.87 38.1 3G97
ASG GLU B 508 71 C Coil 47.40 29.72 111.2 3G97
ASG ALA B 509 72 C Coil -49.41 360.00 104.2 3G97
ASG HIS A 438 1 C Coil 360.00 -160.49 189.4 3G97
ASG MET A 439 2 B Bridge -116.65 163.33 98.9 3G97
ASG CYS A 440 3 T Turn -55.40 151.99 1.8 3G97
ASG LEU A 441 4 T Turn -92.66 -12.48 106.3 3G97
ASG VAL A 442 5 T Turn -93.78 -44.27 0.4 3G97
ASG CYS A 443 6 T Turn -119.13 -4.26 0.0 3G97
ASG SER A 444 7 T Turn 66.18 6.87 69.2 3G97
ASG ASP A 445 8 C Coil -68.99 -178.33 36.6 3G97
ASG GLU A 446 9 B Bridge -76.90 121.58 151.5 3G97
ASG ALA A 447 10 C Coil -64.82 154.31 11.8 3G97
ASG SER A 448 11 C Coil -114.99 14.99 73.2 3G97
ASG GLY A 449 12 E Strand 121.38 -178.42 32.1 3G97
ASG CYS A 450 13 E Strand -94.62 117.91 89.6 3G97
ASG HIS A 451 14 E Strand -122.76 142.04 36.8 3G97
ASG TYR A 452 15 T Turn 41.01 39.96 54.3 3G97
ASG GLY A 453 16 T Turn 96.98 -8.09 46.7 3G97
ASG VAL A 454 17 E Strand -135.87 135.58 8.5 3G97
ASG LEU A 455 18 E Strand -63.16 105.09 47.5 3G97
ASG THR A 456 19 E Strand -133.34 169.18 0.0 3G97
ASG CYS A 457 20 C Coil -86.12 173.25 3.4 3G97
ASG GLY A 458 21 H AlphaHelix -66.14 -40.82 26.9 3G97
ASG SER A 459 22 H AlphaHelix -54.23 -46.52 31.4 3G97
ASG CYS A 460 23 H AlphaHelix -71.37 -25.98 0.0 3G97
ASG LYS A 461 24 H AlphaHelix -62.88 -55.97 63.7 3G97
ASG VAL A 462 25 H AlphaHelix -68.19 -36.72 50.3 3G97
ASG PHE A 463 26 H AlphaHelix -58.71 -50.30 24.5 3G97
ASG PHE A 464 27 H AlphaHelix -59.65 -48.89 2.6 3G97
ASG LYS A 465 28 H AlphaHelix -52.45 -45.78 82.1 3G97
ASG ARG A 466 29 H AlphaHelix -63.49 -44.28 175.9 3G97
ASG ALA A 467 30 H AlphaHelix -61.00 -40.65 0.2 3G97
ASG VAL A 468 31 H AlphaHelix -75.61 -33.43 45.6 3G97
ASG GLU A 469 32 H AlphaHelix -90.63 -21.89 129.0 3G97
ASG GLY A 470 33 C Coil -99.31 -139.36 31.2 3G97
ASG GLN A 471 34 C Coil -97.84 -42.41 165.5 3G97
ASG HIS A 472 35 C Coil 45.33 33.16 74.3 3G97
ASG ASN A 473 36 C Coil -86.31 70.64 140.5 3G97
ASG TYR A 474 37 C Coil -96.38 157.07 83.5 3G97
ASG LEU A 475 38 C Coil -117.79 128.46 77.6 3G97
ASG CYS A 476 39 T Turn -68.06 133.80 10.2 3G97
ASG ALA A 477 40 T Turn -91.37 0.60 4.5 3G97
ASG GLY A 478 41 T Turn -120.34 -127.81 24.3 3G97
ASG ARG A 479 42 T Turn -118.45 39.21 174.4 3G97
ASG ASN A 480 43 C Coil 56.19 30.26 104.4 3G97
ASG ASP A 481 44 C Coil -143.11 34.89 67.0 3G97
ASG CYS A 482 45 C Coil -57.87 146.41 11.1 3G97
ASG ILE A 483 46 C Coil -78.88 120.69 86.4 3G97
ASG ILE A 484 47 C Coil -104.71 89.69 5.4 3G97
ASG ASP A 485 48 T Turn -109.36 -160.14 33.9 3G97
ASG LYS A 486 49 T Turn -70.73 -40.36 123.0 3G97
ASG ILE A 487 50 T Turn -80.32 -48.33 102.9 3G97
ASG ARG A 488 51 G 310Helix -72.02 -13.88 40.3 3G97
ASG ARG A 489 52 G 310Helix -35.57 -42.29 45.2 3G97
ASG LYS A 490 53 G 310Helix -81.57 -28.82 179.8 3G97
ASG ASN A 491 54 T Turn -56.63 -50.72 19.9 3G97
ASG CYS A 492 55 T Turn -131.81 92.06 2.8 3G97
ASG PRO A 493 56 H AlphaHelix -61.70 -27.70 29.9 3G97
ASG ALA A 494 57 H AlphaHelix -62.00 -57.16 18.8 3G97
ASG CYS A 495 58 H AlphaHelix -64.00 -32.72 0.2 3G97
ASG ARG A 496 59 H AlphaHelix -64.73 -42.69 22.2 3G97
ASG TYR A 497 60 H AlphaHelix -70.52 -37.00 29.9 3G97
ASG ARG A 498 61 H AlphaHelix -58.48 -44.28 70.1 3G97
ASG LYS A 499 62 H AlphaHelix -64.99 -36.54 53.1 3G97
ASG CYS A 500 63 H AlphaHelix -61.34 -46.57 0.0 3G97
ASG LEU A 501 64 H AlphaHelix -62.16 -46.76 83.8 3G97
ASG GLN A 502 65 H AlphaHelix -61.49 -34.42 137.7 3G97
ASG ALA A 503 66 H AlphaHelix -81.40 -10.37 42.7 3G97
ASG GLY A 504 67 C Coil 108.26 7.90 41.3 3G97
ASG MET A 505 68 C Coil -64.31 137.60 8.0 3G97
ASG ASN A 506 69 T Turn -152.16 149.83 72.1 3G97
ASG LEU A 507 70 T Turn -72.83 -22.68 45.3 3G97
ASG GLU A 508 71 T Turn -98.32 30.61 158.6 3G97
ASG ALA A 509 72 T Turn -54.06 -46.37 52.1 3G97
ASG ARG A 510 73 C Coil -96.65 360.00 144.0 3G97