Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3ode.std.txt Дата изменения: Thu May 24 15:56:21 2012 Дата индексирования: Tue Oct 2 12:33:59 2012 Кодировка:

REM -------------------------------------------------------------------- 3ODE
REM 3ODE
REM STRIDE: Knowledge-based secondary structure assignment 3ODE
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3ODE
REM 3ODE
REM Residue accessible surface area calculation 3ODE
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3ODE
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3ODE
REM 3ODE
REM ------------------------ General information ----------------------- 3ODE
REM 3ODE
HDR DNA BINDING PROTEIN/DNA 11-AUG-10 3ODE 3ODE
CMP MOL_ID: 1; 3ODE
CMP MOLECULE: POLY [ADP-RIBOSE] POLYMERASE 1; 3ODE
CMP CHAIN: A, B; 3ODE
CMP FRAGMENT: PARP-1 ZINC FINGER 2, ZN2, UNP RESIDUES 105-206; 3ODE
CMP SYNONYM: PARP-1, NAD(+) ADP-RIBOSYLTRANSFERASE 1, ADPRT 1, P 3ODE
CMP RIBOSE] SYNTHASE 1; 3ODE
CMP EC: 2.4.2.30; 3ODE
CMP ENGINEERED: YES; 3ODE
CMP MOL_ID: 2; 3ODE
CMP MOLECULE: 5'-D(*CP*CP*CP*AP*AP*GP*CP*G)-3'; 3ODE
CMP CHAIN: C, E; 3ODE
CMP ENGINEERED: YES; 3ODE
CMP MOL_ID: 3; 3ODE
CMP MOLECULE: 5'-D(*CP*GP*CP*TP*TP*GP*GP*G)-3'; 3ODE
CMP CHAIN: D, F; 3ODE
CMP ENGINEERED: YES 3ODE
SRC MOL_ID: 1; 3ODE
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 3ODE
SRC ORGANISM_COMMON: HUMAN; 3ODE
SRC ORGANISM_TAXID: 9606; 3ODE
SRC GENE: ADPRT, PARP1, PPOL; 3ODE
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3ODE
SRC EXPRESSION_SYSTEM_TAXID: 469008; 3ODE
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA2; 3ODE
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3ODE
SRC EXPRESSION_SYSTEM_PLASMID: PET24; 3ODE
SRC MOL_ID: 2; 3ODE
SRC SYNTHETIC: YES; 3ODE
SRC OTHER_DETAILS: CHEMICALLY SYNTHESIZED DNA; 3ODE
SRC MOL_ID: 3; 3ODE
SRC SYNTHETIC: YES; 3ODE
SRC OTHER_DETAILS: CHEMICALLY SYNTHESIZED DNA 3ODE
AUT J.M.PASCAL,M.-F.LANGELIER 3ODE
REM 3ODE
REM -------------------- Secondary structure summary ------------------- 3ODE
REM 3ODE
CHN /data/npidb/pdb/pdb_new/all/pdb3ode.pdb A 3ODE
REM 3ODE
REM . . . . . 3ODE
SEQ 1 LGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYH 50 3ODE
STR EEEEEE BTTTTT B TTTEEEEEEEEETTTTGGGTEEEEEE 3ODE
REM 3ODE
REM . . . . 3ODE
SEQ 51 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLP 91 3ODE
STR HHHHHHH GGG TTTTTGGGEETGGG HHHHHHHHHH 3ODE
REM 3ODE
CHN /data/npidb/pdb/pdb_new/all/pdb3ode.pdb B 3ODE
REM 3ODE
REM . . . . . 3ODE
SEQ 1 KTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRW 50 3ODE
STR TTTEEEEEETTT BTTTTT B TTTEEEEEEEEETTTTGGGTEEEEE 3ODE
REM 3ODE
REM . . . . 3ODE
SEQ 51 YHPGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLP 93 3ODE
STR E HHHHHHH GGG TTTT GGGTBTTTTT HHHHHHHHHH 3ODE
REM 3ODE
REM 3ODE
REM 3ODE
LOC AlphaHelix PRO 160 A ASN 166 A 3ODE
LOC AlphaHelix THR 189 A GLN 198 A 3ODE
LOC AlphaHelix PRO 160 B ASN 166 B 3ODE
LOC AlphaHelix THR 189 B GLN 198 B 3ODE
LOC 310Helix PRO 149 A LEU 151 A 3ODE
LOC 310Helix GLU 168 A LEU 170 A 3ODE
LOC 310Helix ALA 178 A GLN 180 A 3ODE
LOC 310Helix PHE 184 A LEU 186 A 3ODE
LOC 310Helix PRO 149 B LEU 151 B 3ODE
LOC 310Helix GLU 168 B LEU 170 B 3ODE
LOC 310Helix ALA 178 B GLN 180 B 3ODE
LOC Strand PHE 113 A ALA 118 A 3ODE
LOC Strand GLN 136 A VAL 144 A 3ODE
LOC Strand MET 153 A TYR 158 A 3ODE
LOC Strand LEU 181 A LYS 182 A 3ODE
LOC Strand PHE 113 B ALA 118 B 3ODE
LOC Strand GLN 136 B VAL 144 B 3ODE
LOC Strand MET 153 B TYR 158 B 3ODE
LOC TurnIV CYS 125 A CYS 128 A 3ODE
LOC TurnIV LYS 126 A MET 129 A 3ODE
LOC TurnII GLU 133 A GLN 136 A 3ODE
LOC TurnIV ASP 145 A LYS 148 A 3ODE
LOC TurnIV PRO 146 A PRO 149 A 3ODE
LOC TurnIV LEU 151 A ILE 154 A 3ODE
LOC TurnIV ARG 173 A TYR 176 A 3ODE
LOC TurnIV PRO 174 A SER 177 A 3ODE
LOC TurnII LEU 181 A PHE 184 A 3ODE
LOC TurnI LEU 110 B PHE 113 B 3ODE
LOC TurnIV ALA 118 B ASN 121 B 3ODE
LOC TurnIV CYS 125 B CYS 128 B 3ODE
LOC TurnIV LYS 126 B MET 129 B 3ODE
LOC TurnII GLU 133 B GLN 136 B 3ODE
LOC TurnI ASP 145 B LYS 148 B 3ODE
LOC TurnIV PRO 146 B PRO 149 B 3ODE
LOC TurnIV LEU 151 B ILE 154 B 3ODE
LOC TurnIV ARG 173 B TYR 176 B 3ODE
LOC TurnII LEU 181 B PHE 184 B 3ODE
LOC TurnI GLY 183 B LEU 186 B 3ODE
LOC TurnI PHE 184 B LEU 187 B 3ODE
REM 3ODE
REM --------------- Detailed secondary structure assignment------------- 3ODE
REM 3ODE
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3ODE
ASG LEU A 110 1 C Coil 360.00 80.15 167.5 3ODE
ASG GLY A 111 2 C Coil -60.02 141.38 36.9 3ODE
ASG ASP A 112 3 C Coil -98.65 141.24 31.4 3ODE
ASG PHE A 113 4 E Strand -123.79 148.99 2.0 3ODE
ASG ALA A 114 5 E Strand -128.72 154.58 11.4 3ODE
ASG ALA A 115 6 E Strand -133.78 130.13 4.6 3ODE
ASG GLU A 116 7 E Strand -158.74 168.06 36.1 3ODE
ASG TYR A 117 8 E Strand -80.10 128.85 13.6 3ODE
ASG ALA A 118 9 E Strand -52.17 122.91 0.0 3ODE
ASG LYS A 119 10 C Coil -63.28 -16.72 76.7 3ODE
ASG SER A 120 11 C Coil -163.96 -165.66 28.3 3ODE
ASG ASN A 121 12 C Coil -120.50 13.82 68.0 3ODE
ASG ARG A 122 13 C Coil -91.76 -12.55 213.8 3ODE
ASG SER A 123 14 C Coil -81.68 153.55 19.4 3ODE
ASG THR A 124 15 B Bridge -121.63 134.55 44.7 3ODE
ASG CYS A 125 16 T Turn -67.30 120.37 0.0 3ODE
ASG LYS A 126 17 T Turn -69.33 -15.09 82.3 3ODE
ASG GLY A 127 18 T Turn -73.44 -81.56 30.8 3ODE
ASG CYS A 128 19 T Turn -76.00 -6.65 46.5 3ODE
ASG MET A 129 20 T Turn 59.52 20.32 124.0 3ODE
ASG GLU A 130 21 C Coil -102.63 141.70 126.9 3ODE
ASG LYS A 131 22 B Bridge -61.31 143.19 103.7 3ODE
ASG ILE A 132 23 C Coil -93.76 143.73 0.6 3ODE
ASG GLU A 133 24 T Turn -90.26 152.58 79.4 3ODE
ASG LYS A 134 25 T Turn -58.87 134.92 85.9 3ODE
ASG GLY A 135 26 T Turn 90.90 -18.49 6.3 3ODE
ASG GLN A 136 27 E Strand -70.69 135.49 87.8 3ODE
ASG VAL A 137 28 E Strand -53.27 125.32 28.7 3ODE
ASG ARG A 138 29 E Strand -132.78 155.40 12.8 3ODE
ASG LEU A 139 30 E Strand -121.38 146.25 2.0 3ODE
ASG SER A 140 31 E Strand -132.46 146.48 0.3 3ODE
ASG LYS A 141 32 E Strand -106.94 124.52 23.1 3ODE
ASG LYS A 142 33 E Strand -73.10 132.79 38.6 3ODE
ASG MET A 143 34 E Strand -175.80 135.16 60.0 3ODE
ASG VAL A 144 35 E Strand -57.67 141.59 68.0 3ODE
ASG ASP A 145 36 T Turn -95.12 134.59 30.9 3ODE
ASG PRO A 146 37 T Turn -45.16 -53.51 94.5 3ODE
ASG GLU A 147 38 T Turn -57.19 -50.47 126.2 3ODE
ASG LYS A 148 39 T Turn -117.41 66.35 92.8 3ODE
ASG PRO A 149 40 G 310Helix -65.86 -22.29 78.3 3ODE
ASG GLN A 150 41 G 310Helix -43.14 -28.08 158.6 3ODE
ASG LEU A 151 42 G 310Helix -98.09 -14.30 106.6 3ODE
ASG GLY A 152 43 T Turn 76.35 -148.67 31.8 3ODE
ASG MET A 153 44 E Strand -90.56 91.04 107.3 3ODE
ASG ILE A 154 45 E Strand -93.41 166.50 53.0 3ODE
ASG ASP A 155 46 E Strand -83.27 131.98 44.3 3ODE
ASG ARG A 156 47 E Strand -112.59 118.01 56.3 3ODE
ASG TRP A 157 48 E Strand -99.12 147.43 30.0 3ODE
ASG TYR A 158 49 E Strand -137.15 141.35 16.0 3ODE
ASG HIS A 159 50 C Coil -54.50 136.31 41.7 3ODE
ASG PRO A 160 51 H AlphaHelix -46.76 -39.27 15.8 3ODE
ASG GLY A 161 52 H AlphaHelix -61.61 -55.98 39.3 3ODE
ASG CYS A 162 53 H AlphaHelix -57.82 -38.48 17.8 3ODE
ASG PHE A 163 54 H AlphaHelix -55.90 -61.96 2.8 3ODE
ASG VAL A 164 55 H AlphaHelix -47.96 -41.59 39.3 3ODE
ASG LYS A 165 56 H AlphaHelix -48.30 -35.09 169.2 3ODE
ASG ASN A 166 57 H AlphaHelix -111.34 24.82 38.1 3ODE
ASG ARG A 167 58 C Coil -42.26 -56.16 54.1 3ODE
ASG GLU A 168 59 G 310Helix -52.13 -67.03 136.2 3ODE
ASG GLU A 169 60 G 310Helix -51.50 -28.97 131.0 3ODE
ASG LEU A 170 61 G 310Helix -92.41 0.69 10.0 3ODE
ASG GLY A 171 62 C Coil 66.89 40.79 16.0 3ODE
ASG PHE A 172 63 C Coil -79.69 139.20 5.4 3ODE
ASG ARG A 173 64 T Turn -104.37 86.19 96.6 3ODE
ASG PRO A 174 65 T Turn -48.06 -19.44 37.0 3ODE
ASG GLU A 175 66 T Turn -61.32 -69.32 140.8 3ODE
ASG TYR A 176 67 T Turn -52.20 -40.45 139.2 3ODE
ASG SER A 177 68 T Turn 75.91 -148.49 41.3 3ODE
ASG ALA A 178 69 G 310Helix -61.41 -39.29 4.8 3ODE
ASG SER A 179 70 G 310Helix -38.62 -29.97 93.1 3ODE
ASG GLN A 180 71 G 310Helix -81.34 -3.95 34.3 3ODE
ASG LEU A 181 72 E Strand -98.05 101.76 1.4 3ODE
ASG LYS A 182 73 E Strand -54.06 121.63 69.0 3ODE
ASG GLY A 183 74 T Turn 104.45 -6.55 6.0 3ODE
ASG PHE A 184 75 G 310Helix -55.26 -31.09 22.2 3ODE
ASG SER A 185 76 G 310Helix -75.19 -20.14 57.6 3ODE
ASG LEU A 186 77 G 310Helix -80.83 1.57 13.5 3ODE
ASG LEU A 187 78 C Coil -91.18 154.11 6.9 3ODE
ASG ALA A 188 79 C Coil -49.30 145.76 43.5 3ODE
ASG THR A 189 80 H AlphaHelix -61.33 -39.46 102.3 3ODE
ASG GLU A 190 81 H AlphaHelix -57.48 -48.20 146.3 3ODE
ASG ASP A 191 82 H AlphaHelix -68.14 -40.91 44.0 3ODE
ASG LYS A 192 83 H AlphaHelix -51.85 -48.40 49.7 3ODE
ASG GLU A 193 84 H AlphaHelix -55.40 -60.83 91.6 3ODE
ASG ALA A 194 85 H AlphaHelix -43.09 -40.55 46.1 3ODE
ASG LEU A 195 86 H AlphaHelix -68.55 -53.07 3.6 3ODE
ASG LYS A 196 87 H AlphaHelix -44.66 -40.27 124.3 3ODE
ASG LYS A 197 88 H AlphaHelix -67.08 -54.49 149.4 3ODE
ASG GLN A 198 89 H AlphaHelix -52.23 -7.36 76.8 3ODE
ASG LEU A 199 90 C Coil -104.99 125.98 26.5 3ODE
ASG PRO A 200 91 C Coil -33.68 360.00 77.3 3ODE
ASG LYS B 108 1 C Coil 360.00 -126.20 129.7 3ODE
ASG THR B 109 2 C Coil -136.42 132.34 86.1 3ODE
ASG LEU B 110 3 T Turn -63.98 136.20 20.0 3ODE
ASG GLY B 111 4 T Turn -78.93 -23.63 64.2 3ODE
ASG ASP B 112 5 T Turn -122.01 26.44 25.1 3ODE
ASG PHE B 113 6 E Strand -141.99 132.42 4.4 3ODE
ASG ALA B 114 7 E Strand -129.73 158.84 4.5 3ODE
ASG ALA B 115 8 E Strand -134.08 131.52 3.8 3ODE
ASG GLU B 116 9 E Strand -162.23 167.09 42.0 3ODE
ASG TYR B 117 10 E Strand -82.60 130.59 77.8 3ODE
ASG ALA B 118 11 E Strand -49.27 123.22 4.0 3ODE
ASG LYS B 119 12 T Turn -70.36 -12.44 147.1 3ODE
ASG SER B 120 13 T Turn -163.96 -163.96 24.5 3ODE
ASG ASN B 121 14 T Turn -119.97 12.28 83.3 3ODE
ASG ARG B 122 15 C Coil -94.86 -12.28 194.3 3ODE
ASG SER B 123 16 C Coil -78.64 155.42 20.4 3ODE
ASG THR B 124 17 B Bridge -123.61 133.90 33.8 3ODE
ASG CYS B 125 18 T Turn -69.78 121.82 0.0 3ODE
ASG LYS B 126 19 T Turn -74.87 -8.69 88.8 3ODE
ASG GLY B 127 20 T Turn -74.96 -81.73 30.1 3ODE
ASG CYS B 128 21 T Turn -75.11 -7.37 45.5 3ODE
ASG MET B 129 22 T Turn 62.44 18.72 122.7 3ODE
ASG GLU B 130 23 C Coil -104.27 140.24 125.7 3ODE
ASG LYS B 131 24 B Bridge -52.16 137.41 105.5 3ODE
ASG ILE B 132 25 C Coil -91.47 143.65 0.2 3ODE
ASG GLU B 133 26 T Turn -89.12 150.77 101.2 3ODE
ASG LYS B 134 27 T Turn -56.72 134.89 154.6 3ODE
ASG GLY B 135 28 T Turn 90.68 -23.15 40.0 3ODE
ASG GLN B 136 29 E Strand -64.07 133.65 84.4 3ODE
ASG VAL B 137 30 E Strand -54.48 124.68 27.1 3ODE
ASG ARG B 138 31 E Strand -131.07 155.35 13.8 3ODE
ASG LEU B 139 32 E Strand -122.35 147.21 0.8 3ODE
ASG SER B 140 33 E Strand -132.75 144.54 0.3 3ODE
ASG LYS B 141 34 E Strand -104.08 125.37 18.8 3ODE
ASG LYS B 142 35 E Strand -81.77 136.04 18.7 3ODE
ASG MET B 143 36 E Strand -141.84 165.50 30.3 3ODE
ASG VAL B 144 37 E Strand -93.95 162.58 7.5 3ODE
ASG ASP B 145 38 T Turn -123.68 117.54 53.7 3ODE
ASG PRO B 146 39 T Turn -59.59 -19.41 37.6 3ODE
ASG GLU B 147 40 T Turn -84.87 -28.41 140.6 3ODE
ASG LYS B 148 41 T Turn -126.15 47.52 98.6 3ODE
ASG PRO B 149 42 G 310Helix -45.53 -35.14 53.9 3ODE
ASG GLN B 150 43 G 310Helix -63.71 -23.73 139.4 3ODE
ASG LEU B 151 44 G 310Helix -80.86 -23.09 107.1 3ODE
ASG GLY B 152 45 T Turn 77.71 -127.06 12.1 3ODE
ASG MET B 153 46 E Strand -98.77 103.13 62.5 3ODE
ASG ILE B 154 47 E Strand -82.49 140.62 71.3 3ODE
ASG ASP B 155 48 E Strand -72.91 133.78 49.1 3ODE
ASG ARG B 156 49 E Strand -105.12 117.97 70.0 3ODE
ASG TRP B 157 50 E Strand -96.04 142.93 24.2 3ODE
ASG TYR B 158 51 E Strand -137.00 141.37 4.8 3ODE
ASG HIS B 159 52 C Coil -52.21 133.95 37.9 3ODE
ASG PRO B 160 53 H AlphaHelix -47.36 -37.15 22.8 3ODE
ASG GLY B 161 54 H AlphaHelix -63.22 -59.63 38.9 3ODE
ASG CYS B 162 55 H AlphaHelix -57.67 -37.20 18.8 3ODE
ASG PHE B 163 56 H AlphaHelix -52.73 -63.07 1.2 3ODE
ASG VAL B 164 57 H AlphaHelix -49.87 -39.54 44.4 3ODE
ASG LYS B 165 58 H AlphaHelix -52.03 -32.39 162.1 3ODE
ASG ASN B 166 59 H AlphaHelix -109.84 21.85 50.9 3ODE
ASG ARG B 167 60 C Coil -37.69 -58.39 96.2 3ODE
ASG GLU B 168 61 G 310Helix -52.85 -64.34 61.9 3ODE
ASG GLU B 169 62 G 310Helix -54.03 -31.62 32.2 3ODE
ASG LEU B 170 63 G 310Helix -90.93 5.35 1.2 3ODE
ASG GLY B 171 64 C Coil 63.81 35.78 25.8 3ODE
ASG PHE B 172 65 C Coil -95.81 85.28 3.4 3ODE
ASG ARG B 173 66 T Turn -54.61 153.29 47.9 3ODE
ASG PRO B 174 67 T Turn -59.75 -41.33 91.6 3ODE
ASG GLU B 175 68 T Turn -40.24 -47.31 118.3 3ODE
ASG TYR B 176 69 T Turn -57.59 122.81 50.1 3ODE
ASG SER B 177 70 C Coil -82.47 151.24 33.5 3ODE
ASG ALA B 178 71 G 310Helix -64.29 -14.21 0.0 3ODE
ASG SER B 179 72 G 310Helix -71.89 -10.57 58.3 3ODE
ASG GLN B 180 73 G 310Helix -95.50 -2.50 40.1 3ODE
ASG LEU B 181 74 T Turn -66.94 127.10 1.2 3ODE
ASG LYS B 182 75 B Bridge -52.06 124.84 105.9 3ODE
ASG GLY B 183 76 T Turn 66.89 33.10 28.1 3ODE
ASG PHE B 184 77 T Turn -70.07 -37.69 16.7 3ODE
ASG SER B 185 78 T Turn -69.23 4.94 92.2 3ODE
ASG LEU B 186 79 T Turn -108.90 5.77 139.8 3ODE
ASG LEU B 187 80 T Turn -94.23 154.89 12.2 3ODE
ASG ALA B 188 81 C Coil -49.51 145.76 42.8 3ODE
ASG THR B 189 82 H AlphaHelix -61.94 -36.88 97.9 3ODE
ASG GLU B 190 83 H AlphaHelix -60.64 -46.31 146.9 3ODE
ASG ASP B 191 84 H AlphaHelix -66.93 -42.78 38.8 3ODE
ASG LYS B 192 85 H AlphaHelix -52.29 -45.64 50.1 3ODE
ASG GLU B 193 86 H AlphaHelix -59.25 -57.97 98.6 3ODE
ASG ALA B 194 87 H AlphaHelix -48.01 -36.45 52.1 3ODE
ASG LEU B 195 88 H AlphaHelix -70.01 -53.26 4.2 3ODE
ASG LYS B 196 89 H AlphaHelix -43.37 -39.70 80.5 3ODE
ASG LYS B 197 90 H AlphaHelix -61.63 -51.70 171.2 3ODE
ASG GLN B 198 91 H AlphaHelix -80.91 4.05 75.4 3ODE
ASG LEU B 199 92 C Coil -158.59 92.94 15.2 3ODE
ASG PRO B 200 93 C Coil -124.85 360.00 116.2 3ODE