Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/4jjn.pdb1.pdb.hmm.txt Дата изменения: Wed Jun 19 14:59:27 2013 Дата индексирования: Fri Feb 28 22:24:34 2014 Кодировка:

# pfam_scan.pl, run at Wed Jun 19 14:59:21 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/4jjn.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

4jjn_A 20 94 20 94 PF00125.19 Histone Domain 1 75 75 104.0 3.2e-30 1 CL0012
#HMM ssdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld
#MATCH s++lli+klp++R+vre+ ++f+ +lr++++a+ alqe +e++l++++ed++l+a+hakr+ti+++di+lA+rl+
#PP 799**********************************************************************96
#SEQ STELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLR
4jjn_B 14 80 11 80 PF00125.19 Histone Domain 4 75 75 55.1 6e-15 1 CL0012
#HMM llilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld
#MATCH + i+k ++R++r+ ++ +ris+ ++ ++++l+ +le++++d++ ++ehakrkt+t+ d+ +A++++
#PP 689**************.....7**********************************************975
#SEQ QGITKPAIRRLARRGGV-----KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ
4jjn_C 5 78 5 78 PF00125.19 Histone Domain 1 75 75 90.7 4.5e-26 1 CL0012
#HMM ssdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld
#MATCH +s++++l +pv+Rv+r l++g+ya+ ri++ a+v+l+++le+l +eile+Ag++a+++k+++i pr++qlA+r+d
#PP 789*********************9.***********************************************97
#SEQ RSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRND
4jjn_D 2 70 1 71 PF00125.19 Histone Domain 2 74 75 77.5 6.1e-22 1 CL0012
#HMM sdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrl
#MATCH ++++++ ++++v+++ +++ ++is++++++l+++++d++e+i+++A++la ++k+ ti++r+iq+Avrl
#PP 5899****************....************************************************7
#SEQ VRKETYSSYIYKVLKQTHPD----TGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL
4jjn_E 19 93 19 93 PF00125.19 Histone Domain 1 75 75 104.1 3e-30 1 CL0012
#HMM ssdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld
#MATCH s++lli+klp++R+vre+ ++f+ +lr++++a+ alqe +e++l++++ed++l+a+hakr+ti+++di+lA+rl+
#PP 799**********************************************************************96
#SEQ STELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLR
4jjn_F 16 82 13 82 PF00125.19 Histone Domain 4 75 75 55.0 6.5e-15 1 CL0012
#HMM llilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld
#MATCH + i+k ++R++r+ ++ +ris+ ++ ++++l+ +le++++d++ ++ehakrkt+t+ d+ +A++++
#PP 689**************.....7*********************************************9975
#SEQ QGITKPAIRRLARRGGV-----KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ
4jjn_G 3 76 3 76 PF00125.19 Histone Domain 1 75 75 90.7 4.6e-26 1 CL0012
#HMM ssdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld
#MATCH +s++++l +pv+Rv+r l++g+ya+ ri++ a+v+l+++le+l +eile+Ag++a+++k+++i pr++qlA+r+d
#PP 789*********************9.***********************************************97
#SEQ RSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRND
4jjn_H 2 67 1 68 PF00125.19 Histone Domain 5 74 75 75.5 2.6e-21 1 CL0012
#HMM lilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrl
#MATCH ++++ ++++v+++ +++ ++is++++++l+++++d++e+i+++A++la ++k+ ti++r+iq+Avrl
#PP 789**************....************************************************7
#SEQ ETYSSYIYKVLKQTHPD----TGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL
4jjn_K 41 178 39 179 PF01426.13 BAH Domain 3 118 119 82.6 1.7e-23 1 No_clan
#HMM yavGdfVyvddtstdepyqirrieelkenakne.aeatvl..vrwf..........lrpeet........sllklrqk...rEvfltreseilplaairgkcrVvllsdgeeaqnylpklddtFycslvydpeaktflal
#MATCH + +G++V+++d+ +e+y+++ i+e++ n+ n+ e++v+ +rwf +rp+ + +++k +++ E++lt+e+++++l++++ + +++++s++++++ +++ +d++F+++++++p+a++f+++
#PP 679**********.**************************99**************88888888444444555555559867***********************************9.******************986
#SEQ FGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNvVEIWVFsyLRWFelkpklyyeqFRPDLIkedhplefYKDKFFNEvnkSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKI-EDRDFLVRYACEPTAEKFVPI
#CS EETTCEEEEEETTTTTEEEEEEEEEEEEETTTT.CEEEEE..EEEE..........ECGGGS........TTCHHSTT...TEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTCHCHCHHTTTEEEEEEEEETTTTEEEE-
4jjn_L 43 180 41 181 PF01426.13 BAH Domain 3 118 119 82.4 1.9e-23 1 No_clan
#HMM yavGdfVyvddtstdepyqirrieelkenakne.aeatvl..vrwf..........lrpeet........sllklrqk...rEvfltreseilplaairgkcrVvllsdgeeaqnylpklddtFycslvydpeaktflal
#MATCH + +G++V+++d+ +e+y+++ i+e++ n+ n+ e++v+ +rwf +rp+ + +++k +++ E++lt+e+++++l++++ + +++++s++++++ +++ +d++F+++++++p+a++f+++
#PP 679**********.**************************99**************88888888444444555555559867***********************************9.******************986
#SEQ FGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNvVEIWVFsyLRWFelkpklyyeqFRPDLIkedhplefYKDKFFNEvnkSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKI-EDRDFLVRYACEPTAEKFVPI
#CS EETTCEEEEEETTTTTEEEEEEEEEEEEETTTT.CEEEEE..EEEE..........ECGGGS........TTCHHSTT...TEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTCHCHCHHTTTEEEEEEEEETTTTEEEE-