Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/4mzr.pdb1.pdb.hmm.txt Дата изменения: Thu Apr 24 14:53:53 2014 Дата индексирования: Mon Apr 11 12:56:11 2016 Кодировка:

# pfam_scan.pl, run at Thu Apr 24 14:53:50 2014
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/4mzr.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

4mzr_A 2 195 2 196 PF00870.13 P53 Domain 1 195 196 345.6 6.7e-104 1 CL0073
#HMM ssvpstkdypGeyelelrfqqsgtaksvtctyseklnklfcqlaktcpvqlkvdkpppkGavvralaiykksehvaevvkrcphherakeeneklapashlirvegnqraeyledkvtlrqsvvvpyeapqvGselttvlynymcnsscvGGmnrrpiltiitletkegqllGrrsfevrvcacpGrdrkteeen
#MATCH ssvps+k+y+G+y+++l f +sgtak tctys++lnk+f+qlakt pvql vd++pp+G++vra+aiyk+s+h++evv+rcphher+++ +++lap++hlirvegn raeyl+d++t+r+svvvpye+p+vGs++tt+++++mcnssc+GGmnrrpil+iitle+++g+llGr sfevrvcacpGrdr+teeen
#PP 68***************************************************************************************9.899***************************************************************************************************98
#SEQ SSVPSQKTYQGSYGFRLGFLHSGTAKFGTCTYSPALNKMFVQLAKTVPVQLYVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERSSD-SDGLAPPQHLIRVEGNLRAEYLDDPNTFRHSVVVPYEPPEVGSDYTTIYFKFMCNSSCMGGMNRRPILVIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEEN
#CS SSS---S-B-TTTTEEEEESSBTSSTTTSEEEETTTTEEEEETTSEEEEEEEESS-SSTTEEEEEEEEESSCCCTTSB-B--HHHHHSSTTTSSSS-TTBSEEECS-TT-EEEEETTTTEEEEEEE---SSTTSSSEEEEEEESS-TTCTTTTTTS-EEEEEEEEETTSCEEEEEEEEEEEESSHHHHHHHHHHH
4mzr_A 198 233 197 234 PF07710.6 P53_tetramer Motif 3 38 42 53.4 9.5e-15 1 No_clan
#HMM rkseDeEvFtLkiRGRerYEmLkkineaLELkeavp
#MATCH +k+ D+E+FtL+iRGRer+E +++ neaLELk+a++
#PP 5668*****************************986
#SEQ KKTMDGEYFTLQIRGRERFEQFRERNEALELKDAQA
#CS XXXXXXXEEEEEECSHHHHHHHHHHHHHHHHGGGSX
4mzr_B 2 195 2 196 PF00870.13 P53 Domain 1 195 196 345.6 6.7e-104 1 CL0073
#HMM ssvpstkdypGeyelelrfqqsgtaksvtctyseklnklfcqlaktcpvqlkvdkpppkGavvralaiykksehvaevvkrcphherakeeneklapashlirvegnqraeyledkvtlrqsvvvpyeapqvGselttvlynymcnsscvGGmnrrpiltiitletkegqllGrrsfevrvcacpGrdrkteeen
#MATCH ssvps+k+y+G+y+++l f +sgtak tctys++lnk+f+qlakt pvql vd++pp+G++vra+aiyk+s+h++evv+rcphher+++ +++lap++hlirvegn raeyl+d++t+r+svvvpye+p+vGs++tt+++++mcnssc+GGmnrrpil+iitle+++g+llGr sfevrvcacpGrdr+teeen
#PP 68***************************************************************************************9.899***************************************************************************************************98
#SEQ SSVPSQKTYQGSYGFRLGFLHSGTAKFGTCTYSPALNKMFVQLAKTVPVQLYVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERSSD-SDGLAPPQHLIRVEGNLRAEYLDDPNTFRHSVVVPYEPPEVGSDYTTIYFKFMCNSSCMGGMNRRPILVIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEEN
#CS SSS---S-B-TTTTEEEEESSBTSSTTTSEEEETTTTEEEEETTSEEEEEEEESS-SSTTEEEEEEEEESSCCCTTSB-B--HHHHHSSTTTSSSS-TTBSEEECS-TT-EEEEETTTTEEEEEEE---SSTTSSSEEEEEEESS-TTCTTTTTTS-EEEEEEEEETTSCEEEEEEEEEEEESSHHHHHHHHHHH
4mzr_B 198 233 197 234 PF07710.6 P53_tetramer Motif 3 38 42 53.4 9.5e-15 1 No_clan
#HMM rkseDeEvFtLkiRGRerYEmLkkineaLELkeavp
#MATCH +k+ D+E+FtL+iRGRer+E +++ neaLELk+a++
#PP 5668*****************************986
#SEQ KKTMDGEYFTLQIRGRERFEQFRERNEALELKDAQA
#CS XXXXXXXEEEEEECSHHHHHHHHHHHHHHHHGGGSX
4mzr_C 2 195 2 196 PF00870.13 P53 Domain 1 195 196 345.6 6.7e-104 1 CL0073
#HMM ssvpstkdypGeyelelrfqqsgtaksvtctyseklnklfcqlaktcpvqlkvdkpppkGavvralaiykksehvaevvkrcphherakeeneklapashlirvegnqraeyledkvtlrqsvvvpyeapqvGselttvlynymcnsscvGGmnrrpiltiitletkegqllGrrsfevrvcacpGrdrkteeen
#MATCH ssvps+k+y+G+y+++l f +sgtak tctys++lnk+f+qlakt pvql vd++pp+G++vra+aiyk+s+h++evv+rcphher+++ +++lap++hlirvegn raeyl+d++t+r+svvvpye+p+vGs++tt+++++mcnssc+GGmnrrpil+iitle+++g+llGr sfevrvcacpGrdr+teeen
#PP 68***************************************************************************************9.899***************************************************************************************************98
#SEQ SSVPSQKTYQGSYGFRLGFLHSGTAKFGTCTYSPALNKMFVQLAKTVPVQLYVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERSSD-SDGLAPPQHLIRVEGNLRAEYLDDPNTFRHSVVVPYEPPEVGSDYTTIYFKFMCNSSCMGGMNRRPILVIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEEN
#CS SSS---S-B-TTTTEEEEESSBTSSTTTSEEEETTTTEEEEETTSEEEEEEEESS-SSTTEEEEEEEEESSCCCTTSB-B--HHHHHSSTTTSSSS-TTBSEEECS-TT-EEEEETTTTEEEEEEE---SSTTSSSEEEEEEESS-TTCTTTTTTS-EEEEEEEEETTSCEEEEEEEEEEEESSHHHHHHHHHHH
4mzr_C 198 233 197 234 PF07710.6 P53_tetramer Motif 3 38 42 53.4 9.5e-15 1 No_clan
#HMM rkseDeEvFtLkiRGRerYEmLkkineaLELkeavp
#MATCH +k+ D+E+FtL+iRGRer+E +++ neaLELk+a++
#PP 5668*****************************986
#SEQ KKTMDGEYFTLQIRGRERFEQFRERNEALELKDAQA
#CS XXXXXXXEEEEEECSHHHHHHHHHHHHHHHHGGGSX
4mzr_D 2 195 2 196 PF00870.13 P53 Domain 1 195 196 345.6 6.7e-104 1 CL0073
#HMM ssvpstkdypGeyelelrfqqsgtaksvtctyseklnklfcqlaktcpvqlkvdkpppkGavvralaiykksehvaevvkrcphherakeeneklapashlirvegnqraeyledkvtlrqsvvvpyeapqvGselttvlynymcnsscvGGmnrrpiltiitletkegqllGrrsfevrvcacpGrdrkteeen
#MATCH ssvps+k+y+G+y+++l f +sgtak tctys++lnk+f+qlakt pvql vd++pp+G++vra+aiyk+s+h++evv+rcphher+++ +++lap++hlirvegn raeyl+d++t+r+svvvpye+p+vGs++tt+++++mcnssc+GGmnrrpil+iitle+++g+llGr sfevrvcacpGrdr+teeen
#PP 68***************************************************************************************9.899***************************************************************************************************98
#SEQ SSVPSQKTYQGSYGFRLGFLHSGTAKFGTCTYSPALNKMFVQLAKTVPVQLYVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERSSD-SDGLAPPQHLIRVEGNLRAEYLDDPNTFRHSVVVPYEPPEVGSDYTTIYFKFMCNSSCMGGMNRRPILVIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEEN
#CS SSS---S-B-TTTTEEEEESSBTSSTTTSEEEETTTTEEEEETTSEEEEEEEESS-SSTTEEEEEEEEESSCCCTTSB-B--HHHHHSSTTTSSSS-TTBSEEECS-TT-EEEEETTTTEEEEEEE---SSTTSSSEEEEEEESS-TTCTTTTTTS-EEEEEEEEETTSCEEEEEEEEEEEESSHHHHHHHHHHH
4mzr_D 198 233 197 234 PF07710.6 P53_tetramer Motif 3 38 42 53.4 9.5e-15 1 No_clan
#HMM rkseDeEvFtLkiRGRerYEmLkkineaLELkeavp
#MATCH +k+ D+E+FtL+iRGRer+E +++ neaLELk+a++
#PP 5668*****************************986
#SEQ KKTMDGEYFTLQIRGRERFEQFRERNEALELKDAQA
#CS XXXXXXXEEEEEECSHHHHHHHHHHHHHHHHGGGSX