Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/2y9z.pdb1.pdb.hmm.txt Дата изменения: Thu May 16 22:47:54 2013 Дата индексирования: Fri Feb 28 21:29:04 2014 Кодировка:

# pfam_scan.pl, run at Thu May 16 22:47:51 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/2y9z.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

2y9z_A 4 95 1 95 PF09110.6 HAND Domain 22 113 113 98.3 3.3e-28 1 No_clan
#HMM apkapraPKqinvqdfqffppeLkeLqekEqlaykKkinYkvtlkdvkeseeekeeeeereekrkeeqekidnaeplteeeeeeKeelleeg
#MATCH +p++pr+PK + ++++q++pp+Lk L+ekE+++++Kk++Y +t++dvk+ +++ ++eee+++k+++ + +++n++plteeee+ K+++++eg
#PP 699**************************************************************************************997
#SEQ TPSHPRMPKPHVFHSHQLQPPQLKVLYEKERMWTAKKTGYVPTMDDVKAAYGDISDEEEKKQKLELLKLSVNNSQPLTEEEEKMKADWESEG
2y9z_A 152 269 152 270 PF09111.5 SLIDE Domain 1 117 118 141.0 1.3e-41 1 No_clan
#HMM yekyikrIekgeekiekkkeqekllkkkleqyknPlqeLkikYpp.knkkktyseeeDrflllmvyklGldkeglyekikeeirksplfrFDwflksRteqelsrRvetLlkliekel
#MATCH yeky+k Ie++eeki++ k+q+++l++kl++yknP+ +Lk+k+pp +n+k+tyseeeDrf+llm+ k+Gld++++ye +++eir+ plf++D++++sRt+ el+rR +tLl+++eke+
#PP 89*******************************************9***********************************************************************8
#SEQ YEKYLKIIENEEEKIKRVKMQQEALRRKLSEYKNPFFDLKLKHPPsSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEF
2y9z_B 236 283 234 284 PF15612.1 WHIM1 Family 3 49 50 29.0 6.3e-07 1 No_clan
#HMM pglaidladadylelspeeKlelLlcLcdvv.lsseeartflkqqeee
#MATCH p +++++ ++ l+l+p ++++lL++L+d++ + s+++++++++++++
#PP 677999**************************************9986
#SEQ PLYNREMDKNGILALKPMDRVVLLRALTDWCaSHSSAIHDEIYKLTHG
#CS GGG-CCCCCSTCCCS-HHHHHHHHHHHHHHH.CC-CCHHHHHHHHHT-