Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/2q66.pdb1.pdb.hmm.txt Дата изменения: Thu May 16 21:58:42 2013 Дата индексирования: Fri Feb 28 21:21:57 2014 Кодировка:

# pfam_scan.pl, run at Thu May 16 21:58:40 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/2q66.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

2q66_A 2 346 1 347 PF04928.12 PAP_central Domain 4 253 254 351.6 1.5e-105 1 No_clan
#HMM lgvtkpistaeptekdleeseeLiealkeeglfeseeekkkreevleklnklvkefvkk...............................................................................................alkevpedldlsddslLknldeksvrslngvrvtdeilklvpnkesFrtaLravklWakrrgiYsnvlgflgGvawaiLvarvcqlyPnasastlvekfFeifsqWkwpePvlLkeieeeelslkvwdprekksdrahlmpiitPayPsmnsthnvtrstlkvlleelkrgkeilkeilkekaewealfek
#MATCH xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF+g+t p+st ++t+++++ +++Li++lk+eg+fe+e+e+++r +vl+ l++l+++fv++ ++++vp +l+lsd++lL+nldek++r+lng+rvtdeil+lvp+ ++Fr+aLra+klWa+rr++Y+n++gf+gGvawa+Lvar+cqlyPna++++++++fF i+s+W+wp+Pv+Lk+ie+++l+++vw+p+ + +dr+h+mp+itPayPsm++thn+t+st+kv+l+e+ rg +i+++i+++k++w +lfek
#PP 79*******************************************************989**********************************************************************************************99*******************************************************************************************************************************************************************************************97
#SEQ FGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEvskkknmsdgmardaggkiftygsyrlgvhgpgsdidtlvvvpkhvtredfftvfdsllrerkeldeiapvpdafvpiikikfsgisialicarlDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEK
2q66_A 77 145 67 156 PF01909.18 NTP_transf_2 Family 15 82 93 42.6 5.4e-11 1 CL0260
#HMM aevvlfGSyarGtllpgSDiDllvvlpkpldr..iveeleelaeilkeleellglevDlvlreklerplv
#MATCH +++ +GSy+ G + pgSDiD lvv+pk++ r +++ + l +++kel+e+ ++++ +v++ k+++ +
#PP 689*******************************88888**********************999995.33
#SEQ GKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRedFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKF-SG
#CS SEEEEEHHHHHT-SCTTSSEEEEEEESTTCHH..HHEHHHHHHHHCCCEECCTCEEEEEECEEECCCCCC
2q66_A 348 518 348 518 PF04926.10 PAP_RNA-bind Domain 1 154 157 142.9 5.4e-42 1 No_clan
#HMM dFFekYkhYLqvkasaktee.ahlkWsGlveSklRlLvqkLErvegialahpfpksfervhec.........................eevkdenkeeaseekkeeiytttfyiGLelkekkskegkksldlssaiqeFkeivksweeveykkesmdieikhvkrkdLpddvfeegeerp
#MATCH dFF +Yk+YL+++a+++ ++ +hlkWsGlveSk+RlLv+kLE gi++ahpf+k fe++++c + v+den+ee s ++ + y++t+yiGL+++ k +d++ +++eF+++++s +e + +++ ++++++ vk +dLpd+vf+e+e+rp
#PP 7*****************9999**************************************999*****************999999976666665555.55556778*************3........9***************9999****************************997
#SEQ DFFFRYKFYLEITAYTRGSDeQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFESSYCCpteddyemiqdkygshktetalnalKLVTDENEEE-SIKDAPKAYLSTMYIGLDFNIK--------VDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRP
#CS -HHHH-SEEEEEEEEEES-H.HHHHHHHHHHHHHHHHHHHHHTSTTEEEEEE-SS-EEEEEE-.........................EBECTTCTTSHHHHHSSEEEEEEEEEEEEE--S...SSSS-EE-HHHHHHHHHHHHTSSSTTC-TTTEEEEEEEEEGGG--GGGS-TTS---