Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/2hof.pdb1.pdb.hmm.txt Дата изменения: Mon Oct 12 20:25:23 2015 Дата индексирования: Mon Apr 11 09:36:01 2016 Кодировка:

# pfam_scan.pl, run at Mon Oct 12 20:25:17 2015
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/2hof.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

2hof_A 16 81 7 83 PF13495.1 Phage_int_SAM_4 Domain 12 76 85 24.6 2.3e-05 0 CL0469
#HMM kgysekTekaYlswvkrflrflk..kkspeelteedveaylnyLanerkvspstvnqalsaLsflfr
#MATCH + +se T k ls + ++++k +++ ++edv++yl+yL+ r+++ +t++q+l L++l r
#PP 67899999999***********988999999**************.***************999865
#SEQ QAFSEHTWKMLLSVCRSWAAWCKlnNRKWFPAEPEDVRDYLLYLQ-ARGLAVKTIQQHLGQLNMLHR
2hof_A 120 297 119 299 PF00589.17 Phage_integrase Family 2 171 173 95.6 2.6e-27 1 CL0382
#HMM vLtedeverllaaleeslsirdrllvellleTglRisEllslrvkd.ldldngtirvparetKtkkertvplseellevlkeilsdrkkeaeerellfvsk.........rgkplsdstvnrafkravke...agie.....keltpHtLRhsfatallesGvdlkvvqkllGHssisttkiYthvak
#MATCH + ++d+v++l+++++++++ir+ +++ ++++T lRi+E++++rvkd ++d g++ + ++ +ls +++++++++s ++ +++ +++lf++ ++++ls+++++++f+++++ a+ + ++ H+ R +a +++++Gv++ ++++ G+++++++++Y ++ +
#PP 6789******************************************8899*******..........999******************************9**************************9998664444777899****************************************99876
#SEQ RTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRIAEIARIRVKDiSRTDGGRMLI----------HIKALSLGVTKLVERWISVSGVADDPNNYLFCRVrkngvaapsATSQLSTRALEGIFEATHRLiygAKDDsgqryLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD
#CS HHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHT--HHHHHT-BGGG.EEETTCEEEEEEEECSSSCEEEEEE-HHHHHHHHHHHHHCCHCCSTTSBSSBEC.........TSSB..HHHHHHHHHHHHHH...TT-S.....CCTHHHHHHHHHHHHHHHTTSSHHHHHHHHT-SSHHHHHHHHCCSH
2hof_B 16 81 7 83 PF13495.1 Phage_int_SAM_4 Domain 12 76 85 24.5 2.4e-05 0 CL0469
#HMM kgysekTekaYlswvkrflrflk..kkspeelteedveaylnyLanerkvspstvnqalsaLsflfr
#MATCH + +se T k ls + ++++k +++ ++edv++yl+yL+ r+++ +t++q+l L++l r
#PP 67899999999***********988999999**************.***************999865
#SEQ QAFSEHTWKMLLSVCRSWAAWCKlnNRKWFPAEPEDVRDYLLYLQ-ARGLAVKTIQQHLGQLNMLHR
2hof_B 120 310 119 312 PF00589.17 Phage_integrase Family 2 171 173 105.0 3.3e-30 1 CL0382
#HMM vLtedeverllaaleeslsirdrllvellleTglRisEllslrvkd.ldldngtirvparetKtkke...rtvplseellevlkeilsdrkkeaeerellfvsk.........rgkplsdstvnrafkravke...agie.....keltpHtLRhsfatallesGvdlkvvqkllGHssisttkiYthvak
#MATCH + ++d+v++l+++++++++ir+ +++ ++++T lRi+E++++rvkd ++d g++ +++++t t + + +ls +++++++++s ++ +++ +++lf++ ++++ls+++++++f+++++ a+ + ++ H+ R +a +++++Gv++ ++++ G+++++++++Y ++a
#PP 6789******************************************889*********99999999999999*******************************9**************************9998664444777899****************************************99875
#SEQ RTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRIAEIARIRVKDiSRTDGGRMLIHIGRTATLVStagVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVrkngvaapsATSQLSTRALEGIFEATHRLiygAKDDsgqryLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNAM
#CS HHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHT--HHHHHT-BGGG.EEETTCEEEEEEEECSSSCE...EEEEE-HHHHHHHHHHHHHCCHCCSTTSBSSBEC.........TSSB..HHHHHHHHHHHHHH...TT-S.....CCTHHHHHHHHHHHHHHHTTSSHHHHHHHHT-SSHHHHHHHHCCSH
2hof_G 16 81 7 83 PF13495.1 Phage_int_SAM_4 Domain 12 76 85 24.6 2.3e-05 0 CL0469
#HMM kgysekTekaYlswvkrflrflk..kkspeelteedveaylnyLanerkvspstvnqalsaLsflfr
#MATCH + +se T k ls + ++++k +++ ++edv++yl+yL+ r+++ +t++q+l L++l r
#PP 67899999999***********988999999**************.***************999865
#SEQ QAFSEHTWKMLLSVCRSWAAWCKlnNRKWFPAEPEDVRDYLLYLQ-ARGLAVKTIQQHLGQLNMLHR
2hof_G 120 297 119 299 PF00589.17 Phage_integrase Family 2 171 173 95.6 2.6e-27 1 CL0382
#HMM vLtedeverllaaleeslsirdrllvellleTglRisEllslrvkd.ldldngtirvparetKtkkertvplseellevlkeilsdrkkeaeerellfvsk.........rgkplsdstvnrafkravke...agie.....keltpHtLRhsfatallesGvdlkvvqkllGHssisttkiYthvak
#MATCH + ++d+v++l+++++++++ir+ +++ ++++T lRi+E++++rvkd ++d g++ + ++ +ls +++++++++s ++ +++ +++lf++ ++++ls+++++++f+++++ a+ + ++ H+ R +a +++++Gv++ ++++ G+++++++++Y ++ +
#PP 6789******************************************8899*******..........999******************************9**************************9998664444777899****************************************99876
#SEQ RTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRIAEIARIRVKDiSRTDGGRMLI----------HIKALSLGVTKLVERWISVSGVADDPNNYLFCRVrkngvaapsATSQLSTRALEGIFEATHRLiygAKDDsgqryLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD
#CS HHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHT--HHHHHT-BGGG.EEETTCEEEEEEEECSSSCEEEEEE-HHHHHHHHHHHHHCCHCCSTTSBSSBEC.........TSSB..HHHHHHHHHHHHHH...TT-S.....CCTHHHHHHHHHHHHHHHTTSSHHHHHHHHT-SSHHHHHHHHCCSH
2hof_H 16 81 7 83 PF13495.1 Phage_int_SAM_4 Domain 12 76 85 24.5 2.4e-05 0 CL0469
#HMM kgysekTekaYlswvkrflrflk..kkspeelteedveaylnyLanerkvspstvnqalsaLsflfr
#MATCH + +se T k ls + ++++k +++ ++edv++yl+yL+ r+++ +t++q+l L++l r
#PP 67899999999***********988999999**************.***************999865
#SEQ QAFSEHTWKMLLSVCRSWAAWCKlnNRKWFPAEPEDVRDYLLYLQ-ARGLAVKTIQQHLGQLNMLHR
2hof_H 120 310 119 312 PF00589.17 Phage_integrase Family 2 171 173 105.0 3.3e-30 1 CL0382
#HMM vLtedeverllaaleeslsirdrllvellleTglRisEllslrvkd.ldldngtirvparetKtkke...rtvplseellevlkeilsdrkkeaeerellfvsk.........rgkplsdstvnrafkravke...agie.....keltpHtLRhsfatallesGvdlkvvqkllGHssisttkiYthvak
#MATCH + ++d+v++l+++++++++ir+ +++ ++++T lRi+E++++rvkd ++d g++ +++++t t + + +ls +++++++++s ++ +++ +++lf++ ++++ls+++++++f+++++ a+ + ++ H+ R +a +++++Gv++ ++++ G+++++++++Y ++a
#PP 6789******************************************889*********99999999999999*******************************9**************************9998664444777899****************************************99875
#SEQ RTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRIAEIARIRVKDiSRTDGGRMLIHIGRTATLVStagVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVrkngvaapsATSQLSTRALEGIFEATHRLiygAKDDsgqryLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNAM
#CS HHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHT--HHHHHT-BGGG.EEETTCEEEEEEEECSSSCE...EEEEE-HHHHHHHHHHHHHCCHCCSTTSBSSBEC.........TSSB..HHHHHHHHHHHHHH...TT-S.....CCTHHHHHHHHHHHHHHHTTSSHHHHHHHHT-SSHHHHHHHHCCSH