Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/1z1g.pdb1.pdb.hmm.txt Дата изменения: Thu May 16 20:58:26 2013 Дата индексирования: Fri Feb 28 21:06:47 2014 Кодировка:

# pfam_scan.pl, run at Thu May 16 20:58:17 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/1z1g.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

1z1g_A 3 63 1 64 PF09003.5 Phage_integ_N Domain 10 75 76 81.4 2.8e-23 1 CL0081
#HMM rdlpknLyarkdkrngkvYyqYrnPltgkehgLGrdrrkAiaqAieaNleiaeqlakqaLierikg
#MATCH rdlp+nLy r++ +Yy+Yr+P+tgke+gLGrdrr+Ai++Ai+aN+e+++ ++++ L++ri++
#PP 79********87.....**********************************************986
#SEQ RDLPPNLYIRNN-----GYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINS
1z1g_A 170 323 169 327 PF00589.17 Phage_integrase Family 2 160 173 78.2 5.4e-22 1 CL0382
#HMM vLtedeverllaaleeslsirdrllvellleTglRisEllslrvkdldldngtirvparetKtkkertvpls..eellevlkeilsdrkkeaeerellfvskrgkplsdstvnrafkravkeagie...keltpHtLRhsfatallesGvdlkvvqkllGHssi
#MATCH +Lt+de+ ++++a+e+ +++ rl +el++ Tg R+++l++ +++d + +g+ +v +++Kt+ ++++p +l ke+l+++ ke + e++++s+r++pls+ tv+r+f++ k++g++ +++t+H+LR s++ +l+e+++++k+ q+llGH+s
#PP 8***************.9999996.7**************9.8988..599*****..********8888777799************.***************************865.5557777799********.**********************986
#SEQ RLTADEYLKIYQAAES-SPCWLRL-AELAVVTGQRVGDLCE-KWSD--IVDGYLYV--EQSKTGVKIAIPTAlhIDALGISKETLDKC-KEILGGETIIASTRREPLSSGTVSRYFRAR-KASGLSfegDPPTFHELR-SLSARLYEKQISDKFAQHLLGHKSD
#CS HHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHT--HHHHHT-BGGGEEETTCEEEEEEEECSSSCEEEEEE-..HHHHHHHHHHHHHCCHCCSTTSBSSBECTSSB..HHHHHHHHHHHHHHTT-S...CCTHHHHHHHHHHHHHHHTTSSHHHHHHHHT-SSH
1z1g_B 1 61 1 62 PF09003.5 Phage_integ_N Domain 10 75 76 80.5 5.1e-23 1 CL0081
#HMM rdlpknLyarkdkrngkvYyqYrnPltgkehgLGrdrrkAiaqAieaNleiaeqlakqaLierikg
#MATCH rdlp+nLy r++ +Yy+Yr+P+tgke+gLGrdrr+Ai++Ai+aN+e+++ ++++ L++ri++
#PP 689*******87.....**********************************************986
#SEQ RDLPPNLYIRNN-----GYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINS
1z1g_B 168 321 167 325 PF00589.17 Phage_integrase Family 2 160 173 78.3 5e-22 1 CL0382
#HMM vLtedeverllaaleeslsirdrllvellleTglRisEllslrvkdldldngtirvparetKtkkertvpls..eellevlkeilsdrkkeaeerellfvskrgkplsdstvnrafkravkeagie...keltpHtLRhsfatallesGvdlkvvqkllGHssi
#MATCH +Lt+de+ ++++a+e+ +++ rl +el++ Tg R+++l++ +++d + +g+ +v +++Kt+ ++++p +l ke+l+++ ke + e++++s+r++pls+ tv+r+f++ k++g++ +++t+H+LR s++ +l+e+++++k+ q+llGH+s
#PP 8***************.9999996.7**************9.8988..599*****..********8888777799************.***************************865.5557777799********.**********************986
#SEQ RLTADEYLKIYQAAES-SPCWLRL-AELAVVTGQRVGDLCE-KWSD--IVDGYLYV--EQSKTGVKIAIPTAlhIDALGISKETLDKC-KEILGGETIIASTRREPLSSGTVSRYFRAR-KASGLSfegDPPTFHELR-SLSARLYEKQISDKFAQHLLGHKSD
#CS HHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHT--HHHHHT-BGGGEEETTCEEEEEEEECSSSCEEEEEE-..HHHHHHHHHHHHHCCHCCSTTSBSSBECTSSB..HHHHHHHHHHHHHHTT-S...CCTHHHHHHHHHHHHHHHTTSSHHHHHHHHT-SSH
1z1g_C 3 63 1 64 PF09003.5 Phage_integ_N Domain 10 75 76 81.4 2.8e-23 1 CL0081
#HMM rdlpknLyarkdkrngkvYyqYrnPltgkehgLGrdrrkAiaqAieaNleiaeqlakqaLierikg
#MATCH rdlp+nLy r++ +Yy+Yr+P+tgke+gLGrdrr+Ai++Ai+aN+e+++ ++++ L++ri++
#PP 79********87.....**********************************************986
#SEQ RDLPPNLYIRNN-----GYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINS
1z1g_C 170 323 169 327 PF00589.17 Phage_integrase Family 2 160 173 78.2 5.4e-22 1 CL0382
#HMM vLtedeverllaaleeslsirdrllvellleTglRisEllslrvkdldldngtirvparetKtkkertvpls..eellevlkeilsdrkkeaeerellfvskrgkplsdstvnrafkravkeagie...keltpHtLRhsfatallesGvdlkvvqkllGHssi
#MATCH +Lt+de+ ++++a+e+ +++ rl +el++ Tg R+++l++ +++d + +g+ +v +++Kt+ ++++p +l ke+l+++ ke + e++++s+r++pls+ tv+r+f++ k++g++ +++t+H+LR s++ +l+e+++++k+ q+llGH+s
#PP 8***************.9999996.7**************9.8988..599*****..********8888777799************.***************************865.5557777799********.**********************986
#SEQ RLTADEYLKIYQAAES-SPCWLRL-AELAVVTGQRVGDLCE-KWSD--IVDGYLYV--EQSKTGVKIAIPTAlhIDALGISKETLDKC-KEILGGETIIASTRREPLSSGTVSRYFRAR-KASGLSfegDPPTFHELR-SLSARLYEKQISDKFAQHLLGHKSD
#CS HHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHT--HHHHHT-BGGGEEETTCEEEEEEEECSSSCEEEEEE-..HHHHHHHHHHHHHCCHCCSTTSBSSBECTSSB..HHHHHHHHHHHHHHTT-S...CCTHHHHHHHHHHHHHHHTTSSHHHHHHHHT-SSH
1z1g_D 1 61 1 62 PF09003.5 Phage_integ_N Domain 10 75 76 80.5 5.1e-23 1 CL0081
#HMM rdlpknLyarkdkrngkvYyqYrnPltgkehgLGrdrrkAiaqAieaNleiaeqlakqaLierikg
#MATCH rdlp+nLy r++ +Yy+Yr+P+tgke+gLGrdrr+Ai++Ai+aN+e+++ ++++ L++ri++
#PP 689*******87.....**********************************************986
#SEQ RDLPPNLYIRNN-----GYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINS
1z1g_D 168 321 167 325 PF00589.17 Phage_integrase Family 2 160 173 78.3 5e-22 1 CL0382
#HMM vLtedeverllaaleeslsirdrllvellleTglRisEllslrvkdldldngtirvparetKtkkertvpls..eellevlkeilsdrkkeaeerellfvskrgkplsdstvnrafkravkeagie...keltpHtLRhsfatallesGvdlkvvqkllGHssi
#MATCH +Lt+de+ ++++a+e+ +++ rl +el++ Tg R+++l++ +++d + +g+ +v +++Kt+ ++++p +l ke+l+++ ke + e++++s+r++pls+ tv+r+f++ k++g++ +++t+H+LR s++ +l+e+++++k+ q+llGH+s
#PP 8***************.9999996.7**************9.8988..599*****..********8888777799************.***************************865.5557777799********.**********************986
#SEQ RLTADEYLKIYQAAES-SPCWLRL-AELAVVTGQRVGDLCE-KWSD--IVDGYLYV--EQSKTGVKIAIPTAlhIDALGISKETLDKC-KEILGGETIIASTRREPLSSGTVSRYFRAR-KASGLSfegDPPTFHELR-SLSARLYEKQISDKFAQHLLGHKSD
#CS HHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHT--HHHHHT-BGGGEEETTCEEEEEEEECSSSCEEEEEE-..HHHHHHHHHHHHHCCHCCSTTSBSSBECTSSB..HHHHHHHHHHHHHHTT-S...CCTHHHHHHHHHHHHHHHTTSSHHHHHHHHT-SSH