Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/1utv.pdb2.pdb.hmm.txt Дата изменения: Thu May 16 20:33:13 2013 Дата индексирования: Fri Feb 28 21:02:35 2014 Кодировка:

# pfam_scan.pl, run at Thu May 16 20:33:09 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/1utv.pdb2.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

1utv_L 2 69 1 70 PF02081.10 TrpBP Domain 6 73 75 145.5 2.2e-43 1 No_clan
#HMM asdyivikaledGvnviGltrGkdtkfhhsekLdkGevliaqftehtsaikvrGkaeiqtkyGevese
#MATCH +sd++vikaledGvnviGltrG+dt+fhhsekLdkGevliaqftehtsaikvrGka+iqt++G++ese
#PP 79*****************************************************************9
#SEQ NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE
#CS X--EEEEEESSTTEEEEEEE-SS---EEEEEEE-TT-EEEEE--SSEEEEEEESSEEEEETTEEEETT
1utv_M 2 70 1 71 PF02081.10 TrpBP Domain 6 74 75 146.3 1.2e-43 1 No_clan
#HMM asdyivikaledGvnviGltrGkdtkfhhsekLdkGevliaqftehtsaikvrGkaeiqtkyGevesea
#MATCH +sd++vikaledGvnviGltrG+dt+fhhsekLdkGevliaqftehtsaikvrGka+iqt++G++ese
#PP 79*****************************************************************97
#SEQ NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG
#CS X--EEEEEESSTTEEEEEEE-SS---EEEEEEE-TT-EEEEE--SSEEEEEEESSEEEEETTEEEETT-
1utv_N 2 69 1 70 PF02081.10 TrpBP Domain 6 73 75 145.5 2.2e-43 1 No_clan
#HMM asdyivikaledGvnviGltrGkdtkfhhsekLdkGevliaqftehtsaikvrGkaeiqtkyGevese
#MATCH +sd++vikaledGvnviGltrG+dt+fhhsekLdkGevliaqftehtsaikvrGka+iqt++G++ese
#PP 79*****************************************************************9
#SEQ NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE
#CS X--EEEEEESSTTEEEEEEE-SS---EEEEEEE-TT-EEEEE--SSEEEEEEESSEEEEETTEEEETT
1utv_O 2 69 1 70 PF02081.10 TrpBP Domain 6 73 75 145.5 2.2e-43 1 No_clan
#HMM asdyivikaledGvnviGltrGkdtkfhhsekLdkGevliaqftehtsaikvrGkaeiqtkyGevese
#MATCH +sd++vikaledGvnviGltrG+dt+fhhsekLdkGevliaqftehtsaikvrGka+iqt++G++ese
#PP 79*****************************************************************9
#SEQ NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE
#CS X--EEEEEESSTTEEEEEEE-SS---EEEEEEE-TT-EEEEE--SSEEEEEEESSEEEEETTEEEETT
1utv_P 2 69 1 70 PF02081.10 TrpBP Domain 6 73 75 145.5 2.2e-43 1 No_clan
#HMM asdyivikaledGvnviGltrGkdtkfhhsekLdkGevliaqftehtsaikvrGkaeiqtkyGevese
#MATCH +sd++vikaledGvnviGltrG+dt+fhhsekLdkGevliaqftehtsaikvrGka+iqt++G++ese
#PP 79*****************************************************************9
#SEQ NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE
#CS X--EEEEEESSTTEEEEEEE-SS---EEEEEEE-TT-EEEEE--SSEEEEEEESSEEEEETTEEEETT
1utv_Q 2 69 1 70 PF02081.10 TrpBP Domain 6 73 75 145.5 2.2e-43 1 No_clan
#HMM asdyivikaledGvnviGltrGkdtkfhhsekLdkGevliaqftehtsaikvrGkaeiqtkyGevese
#MATCH +sd++vikaledGvnviGltrG+dt+fhhsekLdkGevliaqftehtsaikvrGka+iqt++G++ese
#PP 79*****************************************************************9
#SEQ NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE
#CS X--EEEEEESSTTEEEEEEE-SS---EEEEEEE-TT-EEEEE--SSEEEEEEESSEEEEETTEEEETT
1utv_R 2 69 1 70 PF02081.10 TrpBP Domain 6 73 75 145.5 2.2e-43 1 No_clan
#HMM asdyivikaledGvnviGltrGkdtkfhhsekLdkGevliaqftehtsaikvrGkaeiqtkyGevese
#MATCH +sd++vikaledGvnviGltrG+dt+fhhsekLdkGevliaqftehtsaikvrGka+iqt++G++ese
#PP 79*****************************************************************9
#SEQ NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE
#CS X--EEEEEESSTTEEEEEEE-SS---EEEEEEE-TT-EEEEE--SSEEEEEEESSEEEEETTEEEETT
1utv_S 2 69 1 70 PF02081.10 TrpBP Domain 6 73 75 145.5 2.2e-43 1 No_clan
#HMM asdyivikaledGvnviGltrGkdtkfhhsekLdkGevliaqftehtsaikvrGkaeiqtkyGevese
#MATCH +sd++vikaledGvnviGltrG+dt+fhhsekLdkGevliaqftehtsaikvrGka+iqt++G++ese
#PP 79*****************************************************************9
#SEQ NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE
#CS X--EEEEEESSTTEEEEEEE-SS---EEEEEEE-TT-EEEEE--SSEEEEEEESSEEEEETTEEEETT
1utv_T 2 69 1 70 PF02081.10 TrpBP Domain 6 73 75 145.5 2.2e-43 1 No_clan
#HMM asdyivikaledGvnviGltrGkdtkfhhsekLdkGevliaqftehtsaikvrGkaeiqtkyGevese
#MATCH +sd++vikaledGvnviGltrG+dt+fhhsekLdkGevliaqftehtsaikvrGka+iqt++G++ese
#PP 79*****************************************************************9
#SEQ NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE
#CS X--EEEEEESSTTEEEEEEE-SS---EEEEEEE-TT-EEEEE--SSEEEEEEESSEEEEETTEEEETT
1utv_U 2 69 1 70 PF02081.10 TrpBP Domain 6 73 75 145.5 2.2e-43 1 No_clan
#HMM asdyivikaledGvnviGltrGkdtkfhhsekLdkGevliaqftehtsaikvrGkaeiqtkyGevese
#MATCH +sd++vikaledGvnviGltrG+dt+fhhsekLdkGevliaqftehtsaikvrGka+iqt++G++ese
#PP 79*****************************************************************9
#SEQ NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE
#CS X--EEEEEESSTTEEEEEEE-SS---EEEEEEE-TT-EEEEE--SSEEEEEEESSEEEEETTEEEETT
1utv_V 2 69 1 70 PF02081.10 TrpBP Domain 6 73 75 145.5 2.2e-43 1 No_clan
#HMM asdyivikaledGvnviGltrGkdtkfhhsekLdkGevliaqftehtsaikvrGkaeiqtkyGevese
#MATCH +sd++vikaledGvnviGltrG+dt+fhhsekLdkGevliaqftehtsaikvrGka+iqt++G++ese
#PP 79*****************************************************************9
#SEQ NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE
#CS X--EEEEEESSTTEEEEEEE-SS---EEEEEEE-TT-EEEEE--SSEEEEEEESSEEEEETTEEEETT