Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/x3dna/3k0j.pdb2.pdb.txt Дата изменения: Fri Mar 22 14:33:06 2013 Дата индексирования: Fri Feb 28 19:39:53 2014 Кодировка:

/pdb/3k0j.pdb2.pdb
3k0j.pdb2.out
2 # duplex
33 # number of base-pairs
1 0 # explicit bp numbering/hetero atoms
175 261 0 # 1 | ...1>F:.104_:[..G]G-----C[..C]:.190_:F<...1 1.13 0.70 22.91 8.78 -1.32
176 260 0 # 2 | ...1>F:.105_:[..C]C-----G[..G]:.189_:F<...1 0.75 0.21 18.45 9.16 -2.90
177 259 0 # 3 | ...1>F:.106_:[..G]G-----C[..C]:.188_:F<...1 0.17 0.03 18.58 8.69 -3.84
178 258 0 # 4 | ...1>F:.107_:[..A]A-----U[..U]:.187_:F<...1 0.82 0.16 10.80 8.77 -3.32
179 257 0 # 5 | ...1>F:.108_:[..C]C-----G[..G]:.186_:F<...1 1.07 0.19 15.30 8.98 -2.78
180 256 0 # 6 | ...1>F:.109_:[..U]U-----A[..A]:.185_:F<...1 1.27 0.91 22.39 8.86 1.22
181 222 0 # 7 | ...1>F:.110_:[..C]C-----G[..G]:.151_:F<...1 1.33 0.16 15.97 9.15 -2.54
182 221 0 # 8 | ...1>F:.111_:[..G]G-----C[..C]:.150_:F<...1 0.67 0.09 10.25 8.75 -3.64
183 220 0 # 9 | ...1>F:.112_:[..G]G-----C[..C]:.149_:F<...1 1.19 0.27 16.96 8.39 -2.44
184 219 0 # 10 | ...1>F:.113_:[..G]G-----C[..C]:.148_:F<...1 0.56 0.20 20.45 8.93 -3.01
185 218 0 # 11 | ...1>F:.114_:[..G]G-*---A[..A]:.147_:F<...1 1.97 0.09 11.72 11.19 1.75
186 216 9 # 12 x ...1>F:.115_:[..U]U-----A[..A]:.145_:F<...1 0.75 0.04 9.51 9.27 -1.70
204 193 0 # 13 | ...1>F:.133_:[..G]G-----C[..C]:.122_:F<...1 1.71 0.58 18.61 8.92 -1.20
205 192 0 # 14 | ...1>F:.134_:[..G]G-----C[..C]:.121_:F<...1 1.45 0.90 9.59 9.22 -1.27
206 191 0 # 15 | ...1>F:.135_:[..A]A-----U[..U]:.120_:F<...1 1.51 1.42 37.26 8.69 1.21
207 189 0 # 16 | ...1>F:.136_:[..G]G-----C[..C]:.118_:F<...1 0.60 0.52 27.21 8.71 -1.99
208 188 0 # 17 | ...1>F:.137_:[..G]G-----C[..C]:.117_:F<...1 0.72 0.44 27.49 9.11 -2.03
209 187 0 # 18 | ...1>F:.138_:[..C]C-----G[..G]:.116_:F<...1 0.64 0.51 17.52 8.78 -2.47
210 214 0 # 19 | ...1>F:.139_:[..U]U-**--A[..A]:.143_:F<...1 4.72 0.72 15.71 6.93 5.95
211 213 9 # 20 x ...1>F:.140_:[..G]G-*---G[..G]:.142_:F<...1 9.45 2.44 29.02 5.93 12.78
195 197 1 # 21 + ...1>F:.124_:[..U]U-**--G[..G]:.126_:F<...1 5.33 2.28 55.22 8.17 11.65
224 255 0 # 22 | ...1>F:.153_:[..A]A-**+-A[..A]:.184_:F<...1 8.23 0.70 24.86 8.22 9.89
227 254 0 # 23 | ...1>F:.156_:[..A]A-*---G[..G]:.183_:F<...1 9.05 0.40 16.73 8.42 7.69
228 253 0 # 24 | ...1>F:.157_:[..C]C-----G[..G]:.182_:F<...1 0.17 0.09 15.28 9.15 -3.89
229 252 0 # 25 | ...1>F:.158_:[..C]C-----G[..G]:.181_:F<...1 0.64 0.31 25.12 8.83 -2.49
230 251 0 # 26 | ...1>F:.159_:[..U]U-----A[..A]:.180_:F<...1 0.44 0.40 20.24 8.77 -2.76
231 249 0 # 27 | ...1>F:.160_:[..G]G-**+-G[..G]:.178_:F<...1 3.64 0.20 19.16 9.10 4.00
232 248 0 # 28 | ...1>F:.161_:[..A]A-**+-C[..C]:.177_:F<...1 3.66 0.78 17.55 9.43 5.10
234 247 0 # 29 | ...1>F:.163_:[..C]C-----G[..G]:.176_:F<...1 0.97 0.66 15.12 9.06 -1.96
235 246 0 # 30 | ...1>F:.164_:[..U]U-----A[..A]:.175_:F<...1 0.22 0.21 11.44 9.08 -3.79
236 245 0 # 31 | ...1>F:.165_:[..G]G-----C[..C]:.174_:F<...1 0.49 0.41 12.27 9.13 -3.08
237 244 9 # 32 x ...1>F:.166_:[..G]G-----C[..C]:.173_:F<...1 0.46 0.34 10.18 8.83 -3.36
239 241 1 # 33 + ...1>F:.168_:[..U]U-*---A[..A]:.170_:F<...1 9.91 1.86 27.18 6.01 13.99
##### Base-pair criteria used: 4.00 0.00 15.00 2.50 65.00 4.50 7.50 [ O N]
##### 9 non-Watson-Crick base-pairs, and 5 helices (2 isolated bps)
##### Helix #1 (12): 1 - 12 ***broken O3'[i] to P[i+1] linkage***
##### Helix #2 (8): 13 - 20 ***broken O3'[i] to P[i+1] linkage***
##### Helix #3 (1): 21
##### Helix #4 (11): 22 - 32 ***broken O3'[i] to P[i+1] linkage***
##### Helix #5 (1): 33