Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/x3dna/1q3v.pdb1.pdb.txt Дата изменения: Fri Mar 22 13:54:48 2013 Дата индексирования: Fri Feb 28 19:19:40 2014 Кодировка:

/pdb/1q3v.pdb1.pdb
1q3v.pdb1.out
2 # duplex
68 # number of base-pairs
1 0 # explicit bp numbering/hetero atoms
2 72 0 # 1 | ...1>C:.101_:[.DG]G-----C[.DC]:.136_:D<...1 0.24 0.04 13.68 8.96 -3.99
3 71 0 # 2 | ...1>C:.102_:[.DA]A-----T[.DT]:.135_:D<...1 0.45 0.33 13.21 8.75 -3.23
4 70 0 # 3 | ...1>C:.103_:[.DT]T-----A[.DA]:.134_:D<...1 0.51 0.02 9.19 8.62 -3.99
5 69 0 # 4 | ...1>C:.104_:[.DA]A-----T[.DT]:.133_:D<...1 0.66 0.00 10.42 8.86 -1.81
6 68 0 # 5 | ...1>C:.105_:[.DA]A-----T[.DT]:.132_:D<...1 0.49 0.27 11.79 8.99 -3.39
7 67 0 # 6 | ...1>C:.106_:[.DC]C-----G[.DG]:.131_:D<...1 0.33 0.03 14.63 8.76 -3.88
8 65 0 # 7 | ...1>C:.108_:[.DT]T-----A[.DA]:.129_:D<...1 0.90 0.03 14.89 8.82 -3.29
9 64 0 # 8 | ...1>C:.109_:[.DC]C-----G[.DG]:.128_:D<...1 0.57 0.11 7.83 8.95 -3.82
10 63 0 # 9 | ...1>C:.110_:[.DG]G-----C[.DC]:.127_:D<...1 0.83 0.07 3.41 8.91 -3.86
11 62 0 # 10 | ...1>C:.111_:[.DT]T-----A[.DA]:.126_:D<...1 0.49 0.10 8.09 8.51 -3.90
12 61 0 # 11 | ...1>C:.112_:[.DA]A-----T[.DT]:.125_:D<...1 0.19 0.00 5.50 8.82 -4.53
13 60 0 # 12 | ...1>C:.113_:[.DT]T-----A[.DA]:.124_:D<...1 0.47 0.02 6.08 8.62 -4.19
14 59 0 # 13 | ...1>C:.114_:[.DA]A-----T[.DT]:.123_:D<...1 0.28 0.17 7.45 8.78 -4.00
15 57 0 # 14 | ...1>X:.116_:[.DT]T-----A[.DA]:.121_:D<...1 0.63 0.13 10.65 8.96 -3.58
16 56 0 # 15 | ...1>X:.117_:[.DG]G-----C[.DC]:.120_:D<...1 0.22 0.02 21.33 9.23 -3.67
17 55 0 # 16 | ...1>X:.118_:[.DT]T-----A[.DA]:.119_:D<...1 0.86 0.23 17.91 8.85 -2.78
18 54 0 # 17 | ...1>X:.119_:[.DA]A-----T[.DT]:.118_:D<...1 1.13 0.00 28.30 9.02 -2.45
19 53 0 # 18 | ...1>X:.120_:[.DT]T-----A[.DA]:.117_:D<...1 0.76 0.24 8.74 8.61 -3.32
20 52 0 # 19 | ...1>X:.121_:[.DG]G-----C[.DC]:.116_:D<...1 1.54 0.88 17.71 8.93 1.18
21 51 0 # 20 | ...1>X:.122_:[.DC]C-----G[.DG]:.115_:D<...1 0.85 0.45 7.39 9.20 -2.89
22 50 0 # 21 | ...1>X:.123_:[.DT]T-----A[.DA]:.114_:D<...1 0.22 0.02 8.71 8.71 -4.32
23 49 0 # 22 | ...1>X:.124_:[.DA]A-----T[.DT]:.113_:D<...1 0.28 0.07 11.08 8.64 -4.03
24 48 0 # 23 | ...1>X:.125_:[.DT]T-----A[.DA]:.112_:D<...1 0.44 0.12 8.54 8.81 -3.89
25 47 0 # 24 | ...1>X:.126_:[.DA]A-----T[.DT]:.111_:D<...1 0.25 0.01 12.65 8.61 -4.10
26 46 0 # 25 | ...1>X:.127_:[.DC]C-----G[.DG]:.110_:D<...1 0.46 0.20 5.71 9.08 -3.85
27 45 0 # 26 | ...1>X:.128_:[.DG]G-----C[.DC]:.109_:D<...1 0.40 0.09 12.65 8.85 -3.79
28 44 0 # 27 | ...1>X:.129_:[.DA]A-----T[.DT]:.108_:D<...1 0.41 0.34 13.66 8.86 -3.23
29 43 0 # 28 | ...1>X:.130_:[.DA]A-----T[.DT]:.107_:D<...1 0.19 0.03 12.18 8.69 -4.14
30 42 0 # 29 | ...1>X:.131_:[.DG]G-----C[.DC]:.106_:D<...1 0.88 0.17 17.96 8.95 -2.89
31 41 0 # 30 | ...1>X:.132_:[.DT]T-----A[.DA]:.105_:D<...1 0.63 0.37 11.67 8.87 -3.04
32 40 0 # 31 | ...1>X:.133_:[.DT]T-----A[.DA]:.104_:D<...1 0.45 0.01 11.92 9.06 -3.94
33 39 0 # 32 | ...1>X:.134_:[.DA]A-----T[.DT]:.103_:D<...1 0.33 0.25 7.28 8.92 -3.81
34 38 0 # 33 | ...1>X:.135_:[.DT]T-----A[.DA]:.102_:D<...1 0.48 0.19 12.24 8.58 -3.54
35 37 9 # 34 x ...1>X:.136_:[.DC]C-----G[.DG]:.101_:D<...1 0.13 0.08 22.22 9.13 -3.61
74 144 0 # 35 | ...1>G:.101_:[.DG]G-----C[.DC]:.136_:H<...1 0.66 0.57 24.91 8.94 -1.95
75 143 0 # 36 | ...1>G:.102_:[.DA]A-----T[.DT]:.135_:H<...1 0.63 0.27 13.50 8.71 -3.16
76 142 0 # 37 | ...1>G:.103_:[.DT]T-----A[.DA]:.134_:H<...1 0.51 0.06 10.23 9.02 -3.85
77 141 0 # 38 | ...1>G:.104_:[.DA]A-----T[.DT]:.133_:H<...1 0.61 0.07 12.71 9.05 -3.61
78 140 0 # 39 | ...1>G:.105_:[.DA]A-----T[.DT]:.132_:H<...1 0.16 0.12 12.58 9.07 -3.98
79 139 0 # 40 | ...1>G:.106_:[.DC]C-----G[.DG]:.131_:H<...1 0.62 0.04 20.96 8.78 -3.26
80 137 0 # 41 | ...1>G:.108_:[.DT]T-----A[.DA]:.129_:H<...1 0.89 0.55 25.14 8.82 0.24
81 136 0 # 42 | ...1>G:.109_:[.DC]C-----G[.DG]:.128_:H<...1 0.44 0.29 13.80 9.01 -3.30
82 135 0 # 43 | ...1>G:.110_:[.DG]G-----C[.DC]:.127_:H<...1 0.46 0.06 4.84 9.13 -4.18
83 134 0 # 44 | ...1>G:.111_:[.DT]T-----A[.DA]:.126_:H<...1 0.23 0.04 9.64 8.66 -4.21
84 133 0 # 45 | ...1>G:.112_:[.DA]A-----T[.DT]:.125_:H<...1 0.57 0.36 6.71 8.82 -3.38
85 132 0 # 46 | ...1>G:.113_:[.DT]T-----A[.DA]:.124_:H<...1 0.11 0.05 4.63 8.90 -4.55
86 131 0 # 47 | ...1>G:.114_:[.DA]A-----T[.DT]:.123_:H<...1 0.36 0.18 9.85 8.90 -3.79
87 129 0 # 48 | ...1>Y:.116_:[.DT]T-----A[.DA]:.121_:H<...1 0.83 0.30 14.83 8.70 -2.82
88 128 0 # 49 | ...1>Y:.117_:[.DG]G-----C[.DC]:.120_:H<...1 1.71 0.99 13.58 8.61 -0.64
89 127 0 # 50 | ...1>Y:.118_:[.DT]T-----A[.DA]:.119_:H<...1 0.79 0.02 8.10 8.91 -1.76
90 126 0 # 51 | ...1>Y:.119_:[.DA]A-----T[.DT]:.118_:H<...1 0.58 0.03 22.83 8.98 -1.23
91 125 0 # 52 | ...1>Y:.120_:[.DT]T-----A[.DA]:.117_:H<...1 1.11 1.05 15.78 8.72 -1.00
92 124 0 # 53 | ...1>Y:.121_:[.DG]G-----C[.DC]:.116_:H<...1 0.60 0.18 13.90 8.89 -3.34
93 123 0 # 54 | ...1>Y:.122_:[.DC]C-----G[.DG]:.115_:H<...1 0.53 0.28 10.72 9.00 -3.37
94 122 0 # 55 | ...1>Y:.123_:[.DT]T-----A[.DA]:.114_:H<...1 0.34 0.10 7.70 8.62 -4.08
95 121 0 # 56 | ...1>Y:.124_:[.DA]A-----T[.DT]:.113_:H<...1 0.44 0.09 2.71 8.58 -4.24
96 120 0 # 57 | ...1>Y:.125_:[.DT]T-----A[.DA]:.112_:H<...1 0.25 0.03 10.33 8.97 -4.18
97 119 0 # 58 | ...1>Y:.126_:[.DA]A-----T[.DT]:.111_:H<...1 0.25 0.02 14.05 8.54 -4.01
98 118 0 # 59 | ...1>Y:.127_:[.DC]C-----G[.DG]:.110_:H<...1 0.29 0.09 1.38 8.91 -4.47
99 117 0 # 60 | ...1>Y:.128_:[.DG]G-----C[.DC]:.109_:H<...1 0.88 0.08 9.64 8.83 -3.48
100 116 0 # 61 | ...1>Y:.129_:[.DA]A-----T[.DT]:.108_:H<...1 0.34 0.30 13.60 8.74 -3.39
101 115 0 # 62 | ...1>Y:.130_:[.DA]A-----T[.DT]:.107_:H<...1 0.56 0.18 16.39 8.83 -3.27
102 114 0 # 63 | ...1>Y:.131_:[.DG]G-----C[.DC]:.106_:H<...1 0.87 0.31 16.68 8.80 -2.69
103 113 0 # 64 | ...1>Y:.132_:[.DT]T-----A[.DA]:.105_:H<...1 0.38 0.33 14.11 8.96 -3.24
104 112 0 # 65 | ...1>Y:.133_:[.DT]T-----A[.DA]:.104_:H<...1 0.37 0.03 16.57 8.96 -3.75
105 111 0 # 66 | ...1>Y:.134_:[.DA]A-----T[.DT]:.103_:H<...1 0.33 0.32 10.09 9.11 -3.54
106 110 0 # 67 | ...1>Y:.135_:[.DT]T-----A[.DA]:.102_:H<...1 0.38 0.16 15.58 9.36 -3.53
107 109 0 # 68 | ...1>Y:.136_:[.DC]C-----G[.DG]:.101_:H<...1 0.36 0.04 15.86 9.27 -3.77
##### Base-pair criteria used: 4.00 0.00 15.00 2.50 65.00 4.50 7.50 [ O N]
##### 0 non-Watson-Crick base-pairs, and 2 helices (0 isolated bps)
##### Helix #1 (34): 1 - 34 ***broken O3'[i] to P[i+1] linkage***
##### Helix #2 (34): 35 - 68 ***broken O3'[i] to P[i+1] linkage***