Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/x3dna/1mzp.pdb1.pdb.txt Дата изменения: Fri Mar 22 13:52:34 2013 Дата индексирования: Fri Feb 28 17:18:31 2014 Кодировка:

/pdb/1mzp.pdb1.pdb
1mzp.pdb1.out
2 # duplex
23 # number of base-pairs
1 0 # explicit bp numbering/hetero atoms
1 55 0 # 1 | ...1>B:...1_:[..G]G-----C[..C]:..55_:B<...1 1.17 0.64 24.66 8.87 -1.32
2 54 0 # 2 | ...1>B:...2_:[..G]G-----C[..C]:..54_:B<...1 0.57 0.15 8.13 8.76 -3.72
3 53 0 # 3 | ...1>B:...3_:[..G]G-----C[..C]:..53_:B<...1 0.62 0.04 6.59 8.76 -3.98
4 52 0 # 4 | ...1>B:...4_:[..A]A-----U[..U]:..52_:B<...1 0.40 0.12 18.35 8.43 -3.45
5 51 0 # 5 | ...1>B:...5_:[..U]U-*---U[..U]:..51_:B<...1 3.04 0.50 18.43 7.12 1.95
6 50 0 # 6 | ...1>B:...6_:[..G]G-----C[..C]:..50_:B<...1 0.53 0.16 8.07 8.73 -3.74
16 49 0 # 7 | ...1>B:..16_:[..G]G-----C[..C]:..49_:B<...1 0.34 0.15 8.91 8.97 -3.91
17 48 0 # 8 | ...1>B:..17_:[..G]G-----C[..C]:..48_:B<...1 0.22 0.00 17.02 8.78 -3.92
18 47 0 # 9 | ...1>B:..18_:[..U]U-----A[..A]:..47_:B<...1 0.47 0.38 11.78 8.76 -3.17
19 46 0 # 10 | ...1>B:..19_:[..G]G-----C[..C]:..46_:B<...1 0.39 0.13 9.52 8.84 -3.87
20 45 0 # 11 | ...1>B:..20_:[..G]G-----C[..C]:..45_:B<...1 0.31 0.17 20.63 8.73 -3.32
21 44 0 # 12 | ...1>B:..21_:[..G]G-*---A[..A]:..44_:B<...1 8.17 0.08 14.94 8.27 6.08
22 33 0 # 13 | ...1>B:..22_:[..A]A-**+-G[..G]:..33_:B<...1 7.74 1.80 51.66 8.01 10.92
23 32 9 # 14 x ...1>B:..23_:[..G]G-----C[..C]:..32_:B<...1 0.79 0.38 10.36 8.81 -2.93
8 40 0 # 15 | ...1>B:...8_:[..G]G-**+-A[..A]:..40_:B<...1 6.39 0.65 23.69 9.91 7.87
9 41 0 # 16 | ...1>B:...9_:[..U]U-**+-A[..A]:..41_:B<...1 4.18 0.54 21.86 10.90 5.36
10 38 9 # 17 x ...1>B:..10_:[..A]A-**--U[..U]:..38_:B<...1 6.25 1.37 8.74 7.03 6.44
13 43 0 # 18 | ...1>B:..13_:[..A]A-----U[..U]:..43_:B<...1 0.48 0.13 8.77 8.91 -3.82
11 42 9 # 19 x ...1>B:..11_:[..G]G-**+-A[..A]:..42_:B<...1 5.12 0.21 17.93 8.93 3.43
24 31 0 # 20 | ...1>B:..24_:[..C]C-----G[..G]:..31_:B<...1 0.39 0.22 8.92 8.86 -3.72
25 30 0 # 21 | ...1>B:..25_:[..C]C-----G[..G]:..30_:B<...1 0.59 0.18 8.61 8.89 -3.62
26 29 9 # 22 x ...1>B:..26_:[..G]G-*---A[..A]:..29_:B<...1 8.69 1.04 16.05 7.90 10.57
15 39 1 # 23 + ...1>B:..15_:[..A]A-**+-G[..G]:..39_:B<...1 5.08 0.06 20.97 8.89 3.24
##### Base-pair criteria used: 4.00 0.00 15.00 2.50 65.00 4.50 7.50 [ O N]
##### 9 non-Watson-Crick base-pairs, and 5 helices (1 isolated bp)
##### Helix #1 (14): 1 - 14 ***broken O3'[i] to P[i+1] linkage***
##### Helix #2 (3): 15 - 17 ***broken O3'[i] to P[i+1] linkage*** ***parallel***
##### Helix #3 (2): 18 - 19 ***broken O3'[i] to P[i+1] linkage***
##### Helix #4 (3): 20 - 22
##### Helix #5 (1): 23