Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/x3dna/1ouq.pdb1.pdb.txt Дата изменения: Fri Mar 22 13:53:59 2013 Дата индексирования: Fri Feb 28 19:18:51 2014 Кодировка:

/pdb/1ouq.pdb1.pdb
1ouq.pdb1.out
2 # duplex
68 # number of base-pairs
1 0 # explicit bp numbering/hetero atoms
2 72 0 # 1 | ...1>C:.101_:[.DG]G-----C[.DC]:.136_:D<...1 0.50 0.33 28.33 9.04 -2.41
3 71 0 # 2 | ...1>C:.102_:[.DA]A-----T[.DT]:.135_:D<...1 0.94 0.92 13.04 8.97 -1.57
4 70 0 # 3 | ...1>C:.103_:[.DT]T-----A[.DA]:.134_:D<...1 0.82 0.80 11.46 8.92 -2.01
5 69 0 # 4 | ...1>C:.104_:[.DA]A-----T[.DT]:.133_:D<...1 0.65 0.40 20.00 9.04 -2.55
6 68 0 # 5 | ...1>C:.105_:[.DA]A-----T[.DT]:.132_:D<...1 1.21 1.05 13.02 9.12 0.95
7 67 0 # 6 | ...1>C:.106_:[.DC]C-----G[.DG]:.131_:D<...1 0.85 0.83 24.13 8.97 -1.28
8 65 0 # 7 | ...1>C:.108_:[.DT]T-----A[.DA]:.129_:D<...1 1.01 0.17 17.80 8.92 -2.77
9 64 0 # 8 | ...1>C:.109_:[.DC]C-----G[.DG]:.128_:D<...1 0.31 0.09 12.96 9.20 -3.87
10 63 0 # 9 | ...1>C:.110_:[.DG]G-----C[.DC]:.127_:D<...1 0.55 0.24 8.01 9.03 -3.58
11 62 0 # 10 | ...1>C:.111_:[.DT]T-----A[.DA]:.126_:D<...1 0.78 0.07 6.85 8.57 -3.74
12 61 0 # 11 | ...1>C:.112_:[.DA]A-----T[.DT]:.125_:D<...1 0.28 0.03 10.99 8.81 -4.12
13 60 0 # 12 | ...1>C:.113_:[.DT]T-----A[.DA]:.124_:D<...1 0.99 0.39 5.59 8.81 -2.95
14 59 0 # 13 | ...1>C:.114_:[.DA]A-----T[.DT]:.123_:D<...1 0.49 0.12 2.87 8.81 -4.12
15 57 0 # 14 | ...1>X:.116_:[.DT]T-----A[.DA]:.121_:D<...1 0.60 0.02 12.50 9.10 -3.73
16 56 0 # 15 | ...1>X:.117_:[.DG]G-----C[.DC]:.120_:D<...1 1.41 0.55 17.49 8.46 -1.60
17 55 0 # 16 | ...1>X:.118_:[.DT]T-----A[.DA]:.119_:D<...1 0.88 0.82 8.91 8.76 -0.04
18 54 0 # 17 | ...1>X:.119_:[.DA]A-----T[.DT]:.118_:D<...1 2.63 1.90 27.61 8.88 5.82
19 53 0 # 18 | ...1>X:.120_:[.DT]T-----A[.DA]:.117_:D<...1 1.59 0.75 16.07 9.30 1.89
20 52 0 # 19 | ...1>X:.121_:[.DG]G-----C[.DC]:.116_:D<...1 0.88 0.71 13.07 8.84 -2.05
21 51 0 # 20 | ...1>X:.122_:[.DC]C-----G[.DG]:.115_:D<...1 0.49 0.36 8.11 9.12 -3.40
22 50 0 # 21 | ...1>X:.123_:[.DT]T-----A[.DA]:.114_:D<...1 0.33 0.20 7.17 8.82 -3.92
23 49 0 # 22 | ...1>X:.124_:[.DA]A-----T[.DT]:.113_:D<...1 0.22 0.13 10.50 8.70 -4.01
24 48 0 # 23 | ...1>X:.125_:[.DT]T-----A[.DA]:.112_:D<...1 0.46 0.41 1.58 9.02 -3.64
25 47 0 # 24 | ...1>X:.126_:[.DA]A-----T[.DT]:.111_:D<...1 0.63 0.35 16.67 8.94 -2.83
26 46 0 # 25 | ...1>X:.127_:[.DC]C-----G[.DG]:.110_:D<...1 0.84 0.37 7.15 9.03 -3.06
27 45 0 # 26 | ...1>X:.128_:[.DG]G-----C[.DC]:.109_:D<...1 0.59 0.25 12.72 9.02 -3.27
28 44 0 # 27 | ...1>X:.129_:[.DA]A-----T[.DT]:.108_:D<...1 0.60 0.48 12.03 8.87 -2.85
29 43 0 # 28 | ...1>X:.130_:[.DA]A-----T[.DT]:.107_:D<...1 0.28 0.16 16.34 8.86 -3.60
30 42 0 # 29 | ...1>X:.131_:[.DG]G-----C[.DC]:.106_:D<...1 1.18 0.44 22.32 9.19 -1.83
31 41 0 # 30 | ...1>X:.132_:[.DT]T-----A[.DA]:.105_:D<...1 0.74 0.61 11.76 9.00 -2.45
32 40 0 # 31 | ...1>X:.133_:[.DT]T-----A[.DA]:.104_:D<...1 0.79 0.25 16.88 9.19 -2.85
33 39 0 # 32 | ...1>X:.134_:[.DA]A-----T[.DT]:.103_:D<...1 0.52 0.51 5.72 9.02 -3.16
34 38 0 # 33 | ...1>X:.135_:[.DT]T-----A[.DA]:.102_:D<...1 0.92 0.29 15.45 8.93 -0.73
35 37 9 # 34 x ...1>X:.136_:[.DC]C-----G[.DG]:.101_:D<...1 0.20 0.11 26.82 9.20 -3.23
74 144 0 # 35 | ...1>G:.101_:[.DG]G-----C[.DC]:.136_:H<...1 0.53 0.09 22.85 8.86 -3.15
75 143 0 # 36 | ...1>G:.102_:[.DA]A-----T[.DT]:.135_:H<...1 0.79 0.66 17.37 8.98 -0.03
76 142 0 # 37 | ...1>G:.103_:[.DT]T-----A[.DA]:.134_:H<...1 0.27 0.06 15.02 9.28 -3.86
77 141 0 # 38 | ...1>G:.104_:[.DA]A-----T[.DT]:.133_:H<...1 0.69 0.22 17.69 9.14 -2.98
78 140 0 # 39 | ...1>G:.105_:[.DA]A-----T[.DT]:.132_:H<...1 0.61 0.39 11.05 9.22 -3.05
79 139 0 # 40 | ...1>G:.106_:[.DC]C-----G[.DG]:.131_:H<...1 0.85 0.65 18.61 8.74 -1.93
80 137 0 # 41 | ...1>G:.108_:[.DT]T-----A[.DA]:.129_:H<...1 1.04 0.44 24.78 8.85 0.16
81 136 0 # 42 | ...1>G:.109_:[.DC]C-----G[.DG]:.128_:H<...1 0.27 0.25 11.55 9.13 -3.65
82 135 0 # 43 | ...1>G:.110_:[.DG]G-----C[.DC]:.127_:H<...1 0.65 0.17 1.33 9.21 -3.94
83 134 0 # 44 | ...1>G:.111_:[.DT]T-----A[.DA]:.126_:H<...1 0.24 0.11 4.87 8.66 -4.30
84 133 0 # 45 | ...1>G:.112_:[.DA]A-----T[.DT]:.125_:H<...1 0.35 0.28 11.38 9.12 -3.52
85 132 0 # 46 | ...1>G:.113_:[.DT]T-----A[.DA]:.124_:H<...1 0.24 0.14 1.98 9.03 -4.37
86 131 0 # 47 | ...1>G:.114_:[.DA]A-----T[.DT]:.123_:H<...1 1.00 0.47 14.02 9.08 -2.36
87 129 0 # 48 | ...1>Y:.116_:[.DT]T-----A[.DA]:.121_:H<...1 0.72 0.36 12.54 8.60 -2.92
88 128 0 # 49 | ...1>Y:.117_:[.DG]G-----C[.DC]:.120_:H<...1 1.70 0.38 18.33 8.78 0.37
89 127 0 # 50 | ...1>Y:.118_:[.DT]T-----A[.DA]:.119_:H<...1 1.21 0.46 16.59 8.63 -0.04
90 126 0 # 51 | ...1>Y:.119_:[.DA]A-----T[.DT]:.118_:H<...1 1.15 0.56 22.66 8.71 0.40
91 125 0 # 52 | ...1>Y:.120_:[.DT]T-----A[.DA]:.117_:H<...1 1.05 0.92 17.59 8.58 -1.23
92 124 0 # 53 | ...1>Y:.121_:[.DG]G-----C[.DC]:.116_:H<...1 0.22 0.07 9.59 9.10 -4.15
93 123 0 # 54 | ...1>Y:.122_:[.DC]C-----G[.DG]:.115_:H<...1 0.87 0.35 10.95 9.17 -2.87
94 122 0 # 55 | ...1>Y:.123_:[.DT]T-----A[.DA]:.114_:H<...1 0.18 0.10 9.11 8.71 -4.16
95 121 0 # 56 | ...1>Y:.124_:[.DA]A-----T[.DT]:.113_:H<...1 0.35 0.18 3.43 8.69 -4.11
96 120 0 # 57 | ...1>Y:.125_:[.DT]T-----A[.DA]:.112_:H<...1 0.17 0.06 11.20 9.21 -4.14
97 119 0 # 58 | ...1>Y:.126_:[.DA]A-----T[.DT]:.111_:H<...1 0.18 0.03 7.35 8.89 -4.38
98 118 0 # 59 | ...1>Y:.127_:[.DC]C-----G[.DG]:.110_:H<...1 0.48 0.41 9.48 8.93 -3.23
99 117 0 # 60 | ...1>Y:.128_:[.DG]G-----C[.DC]:.109_:H<...1 1.19 0.16 12.44 9.07 -0.87
100 116 0 # 61 | ...1>Y:.129_:[.DA]A-----T[.DT]:.108_:H<...1 0.37 0.25 17.30 8.88 -3.26
101 115 0 # 62 | ...1>Y:.130_:[.DA]A-----T[.DT]:.107_:H<...1 0.64 0.62 23.14 9.04 -1.97
102 114 0 # 63 | ...1>Y:.131_:[.DG]G-----C[.DC]:.106_:H<...1 1.58 0.91 23.02 9.12 -0.45
103 113 0 # 64 | ...1>Y:.132_:[.DT]T-----A[.DA]:.105_:H<...1 0.81 0.63 12.91 8.82 -0.29
104 112 0 # 65 | ...1>Y:.133_:[.DT]T-----A[.DA]:.104_:H<...1 0.30 0.15 27.67 9.12 -3.02
105 111 0 # 66 | ...1>Y:.134_:[.DA]A-----T[.DT]:.103_:H<...1 0.62 0.18 18.53 9.14 -3.08
106 110 0 # 67 | ...1>Y:.135_:[.DT]T-----A[.DA]:.102_:H<...1 0.57 0.47 19.99 9.39 -2.49
107 109 0 # 68 | ...1>Y:.136_:[.DC]C-----G[.DG]:.101_:H<...1 0.61 0.19 16.58 9.49 -3.18
##### Base-pair criteria used: 4.00 0.00 15.00 2.50 65.00 4.50 7.50 [ O N]
##### 0 non-Watson-Crick base-pairs, and 2 helices (0 isolated bps)
##### Helix #1 (34): 1 - 34 ***broken O3'[i] to P[i+1] linkage***
##### Helix #2 (34): 35 - 68 ***broken O3'[i] to P[i+1] linkage***