Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/x3dna/1jgq.pdb1.pdb.txt Дата изменения: Fri Mar 22 13:50:17 2013 Дата индексирования: Fri Feb 28 19:16:52 2014 Кодировка:

/pdb/1jgq.pdb1.pdb
1jgq.pdb1.out
2 # duplex
70 # number of base-pairs
1 0 # explicit bp numbering/hetero atoms
1520 1577 0 # 1 | ...1>B:...1_:[..G]G-----C[..C]:..72_:B<...1 1.06 0.06 6.14 8.55 -3.52
1521 1576 0 # 2 | ...1>B:...2_:[..C]C-----G[..G]:..71_:B<...1 0.51 0.37 11.87 8.81 -3.16
1522 1575 0 # 3 | ...1>B:...3_:[..G]G-----C[..C]:..70_:B<...1 0.46 0.44 10.82 9.01 -3.12
1523 1574 0 # 4 | ...1>B:...4_:[..G]G-*---U[..U]:..69_:B<...1 2.36 0.65 11.66 8.85 1.24
1524 1573 0 # 5 | ...1>B:...5_:[..A]A-----U[..U]:..68_:B<...1 0.33 0.24 20.42 8.70 -3.17
1525 1572 0 # 6 | ...1>B:...6_:[..U]U-----A[..A]:..67_:B<...1 0.62 0.30 21.85 8.61 -2.69
1526 1571 9 # 7 x ...1>B:...7_:[..U]U-----A[..A]:..66_:B<...1 0.30 0.06 4.52 8.69 -4.35
1551 1544 0 # 8 | ...1>B:..41_:[..U]U-----A[..A]:..29_:B<...1 0.36 0.35 10.07 8.71 -3.43
1552 1543 0 # 9 | ...1>B:..42_:[..G]G-----C[..C]:..28_:B<...1 0.59 0.47 10.52 8.76 -2.95
1553 1542 0 # 10 | ...1>B:..43_:[..G]G-----C[..C]:..27_:B<...1 0.44 0.24 22.10 8.81 -2.98
1555 1541 0 # 11 | ...1>B:..45_:[..G]G-*---C[..C]:..25_:B<...1 7.04 1.41 29.31 11.85 11.33
1529 1540 0 # 12 | ...1>B:..11_:[..C]C-----G[..G]:..24_:B<...1 0.37 0.19 19.82 8.74 -3.25
1530 1539 0 # 13 | ...1>B:..12_:[..U]U-----A[..A]:..23_:B<...1 0.44 0.43 10.14 8.91 -3.20
1531 1538 0 # 14 | ...1>B:..13_:[..C]C-----G[..G]:..22_:B<...1 0.29 0.08 5.99 8.95 -4.25
1532 1527 0 # 15 | ...1>B:..14_:[..A]A-**--U[..U]:...8_:B<...1 4.57 0.52 12.30 7.11 3.21
1533 1557 9 # 16 x ...1>B:..15_:[..G]G-**+-C[..C]:..48_:B<...1 3.92 0.10 1.87 8.83 1.21
1535 1562 1 # 17 + ...1>B:..19_:[..G]G-----C[..C]:..56_:B<...1 0.34 0.03 35.61 8.84 -2.82
1547 1549 1 # 18 + ...1>B:..33_:[..U]U-*---A[..A]:..36_:B<...1 10.65 1.28 22.41 7.18 14.32
1558 1569 0 # 19 | ...1>B:..50_:[..U]U-----A[..A]:..64_:B<...1 0.30 0.11 6.64 8.78 -4.15
1559 1568 0 # 20 | ...1>B:..51_:[..G]G-----C[..C]:..63_:B<...1 0.35 0.04 14.10 8.83 -3.86
1560 1567 0 # 21 | ...1>B:..52_:[..U]U-----A[..A]:..62_:B<...1 0.58 0.08 6.75 8.87 -3.91
1561 1566 9 # 22 x ...1>B:..53_:[..G]G-----C[..C]:..61_:B<...1 0.42 0.18 12.56 8.86 -3.59
1583 1638 0 # 23 | ...1>C:...2_:[..C]C-----G[..G]:..71_:C<...1 0.51 0.37 11.86 8.81 -3.16
1584 1637 0 # 24 | ...1>C:...3_:[..G]G-----C[..C]:..70_:C<...1 0.46 0.44 10.81 9.01 -3.13
1585 1636 0 # 25 | ...1>C:...4_:[..G]G-*---U[..U]:..69_:C<...1 2.36 0.65 11.64 8.84 1.24
1586 1635 0 # 26 | ...1>C:...5_:[..A]A-----U[..U]:..68_:C<...1 0.33 0.24 20.43 8.70 -3.17
1587 1634 0 # 27 | ...1>C:...6_:[..U]U-----A[..A]:..67_:C<...1 0.62 0.30 21.82 8.61 -2.69
1588 1633 9 # 28 x ...1>C:...7_:[..U]U-----A[..A]:..66_:C<...1 0.30 0.06 4.49 8.69 -4.35
1613 1606 0 # 29 | ...1>C:..41_:[..U]U-----A[..A]:..29_:C<...1 0.36 0.35 10.06 8.71 -3.43
1614 1605 0 # 30 | ...1>C:..42_:[..G]G-----C[..C]:..28_:C<...1 0.59 0.47 10.52 8.76 -2.95
1615 1604 0 # 31 | ...1>C:..43_:[..G]G-----C[..C]:..27_:C<...1 0.44 0.24 22.08 8.81 -2.98
1617 1603 0 # 32 | ...1>C:..45_:[..G]G-*---C[..C]:..25_:C<...1 7.04 1.41 29.32 11.85 11.33
1591 1602 0 # 33 | ...1>C:..11_:[..C]C-----G[..G]:..24_:C<...1 0.38 0.19 19.83 8.74 -3.25
1592 1601 0 # 34 | ...1>C:..12_:[..U]U-----A[..A]:..23_:C<...1 0.44 0.43 10.13 8.91 -3.20
1593 1600 0 # 35 | ...1>C:..13_:[..C]C-----G[..G]:..22_:C<...1 0.29 0.08 5.97 8.95 -4.25
1594 1589 0 # 36 | ...1>C:..14_:[..A]A-**--U[..U]:...8_:C<...1 4.57 0.52 12.29 7.11 3.22
1595 1619 9 # 37 x ...1>C:..15_:[..G]G-**+-C[..C]:..48_:C<...1 3.92 0.10 1.87 8.83 1.21
1597 1624 1 # 38 + ...1>C:..19_:[..G]G-----C[..C]:..56_:C<...1 0.34 0.03 35.61 8.84 -2.82
1610 1728 0 # 39 | ...1>C:..35_:[..A]A-----U[..U]:..17_:1<...1 0.15 0.11 8.84 9.08 -4.18
1611 1727 9 # 40 x ...1>C:..36_:[..A]A-----U[..U]:..16_:1<...1 0.16 0.12 11.49 9.00 -4.03
1620 1631 0 # 41 | ...1>C:..50_:[..U]U-----A[..A]:..64_:C<...1 0.30 0.11 6.65 8.78 -4.15
1621 1630 0 # 42 | ...1>C:..51_:[..G]G-----C[..C]:..63_:C<...1 0.34 0.04 14.07 8.83 -3.86
1622 1629 0 # 43 | ...1>C:..52_:[..U]U-----A[..A]:..62_:C<...1 0.58 0.08 6.72 8.87 -3.91
1623 1628 9 # 44 x ...1>C:..53_:[..G]G-----C[..C]:..61_:C<...1 0.42 0.18 12.58 8.86 -3.59
1644 1707 0 # 45 | ...1>D:...1_:[..U]U-----A[..A]:..72_:D<...1 1.10 1.10 28.13 8.89 -0.28
1645 1706 0 # 46 | ...1>D:...2_:[..C]C-----G[..G]:..71_:D<...1 0.26 0.21 4.73 9.02 -4.09
1646 1705 0 # 47 | ...1>D:...3_:[..C]C-----G[..G]:..70_:D<...1 0.54 0.10 10.62 9.08 -3.73
1647 1704 0 # 48 | ...1>D:...4_:[..G]G-----C[..C]:..69_:D<...1 1.26 0.37 11.42 8.73 -2.44
1648 1703 0 # 49 | ...1>D:...5_:[..U]U-*---G[..G]:..68_:D<...1 2.03 0.54 4.43 8.91 0.33
1649 1702 0 # 50 | ...1>D:...6_:[..G]G-----C[..C]:..67_:D<...1 1.25 0.47 16.01 8.70 -2.01
1650 1701 0 # 51 | ...1>D:...7_:[..A]A-----U[..U]:..66_:D<...1 0.36 0.34 3.93 8.97 -3.76
1687 1699 0 # 52 | ...1>D:..50_:[..G]G-----C[..C]:..64_:D<...1 1.43 0.12 10.76 8.60 -0.79
1688 1698 0 # 53 | ...1>D:..51_:[..G]G-----C[..C]:..63_:D<...1 1.24 0.10 9.55 8.71 -3.08
1689 1697 0 # 54 | ...1>D:..52_:[..G]G-----C[..C]:..62_:D<...1 1.34 0.24 11.13 8.91 -0.62
1690 1696 9 # 55 x ...1>D:..53_:[..G]G-----C[..C]:..61_:D<...1 0.14 0.02 7.26 9.02 -4.45
1676 1672 0 # 56 | ...1>D:..37_:[..A]A-*---U[..U]:..33_:D<...1 6.89 0.05 4.61 8.39 7.22
1677 1671 0 # 57 | ...1>D:..38_:[..U]U-*---U[..U]:..32_:D<...1 2.91 0.91 13.60 9.10 4.41
1678 1670 0 # 58 | ...1>D:..39_:[..U]U-----A[..A]:..31_:D<...1 0.73 0.72 17.32 8.92 -1.96
1679 1669 0 # 59 | ...1>D:..40_:[..C]C-----G[..G]:..30_:D<...1 0.87 0.35 10.63 8.76 -2.90
1680 1668 0 # 60 | ...1>D:..41_:[..C]C-----G[..G]:..29_:D<...1 0.67 0.02 15.15 8.87 -3.52
1681 1667 0 # 61 | ...1>D:..42_:[..G]G-----C[..C]:..28_:D<...1 0.78 0.12 12.24 8.78 -3.36
1682 1666 0 # 62 | ...1>D:..43_:[..G]G-----C[..C]:..27_:D<...1 0.89 0.24 26.25 8.69 -2.31
1683 1665 0 # 63 | ...1>D:..44_:[..C]C-*---A[..A]:..26_:D<...1 2.95 0.25 21.61 9.30 3.54
1652 1664 0 # 64 | ...1>D:..10_:[..A]A-----U[..U]:..25_:D<...1 0.71 0.36 4.35 8.77 -3.34
1653 1663 0 # 65 | ...1>D:..11_:[..C]C-----G[..G]:..24_:D<...1 0.95 0.67 16.00 8.92 -1.91
1654 1662 0 # 66 | ...1>D:..12_:[..A]A-----U[..U]:..23_:D<...1 0.67 0.48 4.57 8.82 -1.14
1655 1651 0 # 67 | ...1>D:..13_:[..A]A-**--A[..A]:...9_:D<...1 4.73 0.39 27.63 9.17 3.89
1656 1685 0 # 68 | ...1>D:..14_:[..A]A-**+-A[..A]:..46_:D<...1 2.81 0.03 11.77 10.68 2.46
1657 1686 9 # 69 x ...1>D:..15_:[..G]G-**+-U[..U]:..48_:D<...1 0.46 0.05 16.03 9.03 -1.63
1660 1691 1 # 70 + ...1>D:..19_:[..G]G-----C[..C]:..56_:D<...1 0.32 0.07 38.40 8.54 -2.63
##### Base-pair criteria used: 4.00 0.00 15.00 2.50 65.00 4.50 7.50 [ O N]
##### 16 non-Watson-Crick base-pairs, and 13 helices (4 isolated bps)
##### Helix #1 (7): 1 - 7
##### Helix #2 (9): 8 - 16 ***broken O3'[i] to P[i+1] linkage***
##### Helix #3 (1): 17
##### Helix #4 (1): 18
##### Helix #5 (4): 19 - 22
##### Helix #6 (6): 23 - 28
##### Helix #7 (9): 29 - 37 ***broken O3'[i] to P[i+1] linkage***
##### Helix #8 (1): 38
##### Helix #9 (2): 39 - 40
##### Helix #10 (4): 41 - 44
##### Helix #11 (11): 45 - 55 ***broken O3'[i] to P[i+1] linkage***
##### Helix #12 (14): 56 - 69 ***intra-chain direction reverse***
##### Helix #13 (1): 70