Classification:
| Class: | Alpha and beta proteins (a+b) |
| Fold: | TBP-like |
| Superfamily: | TBP-like |
| Family: | TATA-box binding protein (TBP), C-terminal domain |
Alignment:
Information:
Download full alignment in MSF format: d_129_1_1.msfDownload structural alignment: d_129_1_1.pdb
Quality of structural alignment: good
Method of structural alignment: SSM
Description: specific contact with minor groove of DNA by b-sheet
| PDB: | Chain: | Residues: | Model number: |
| 1cdw | A | 155-252 | 1 |
| 1cdw | A | 253-333 | 2 |
| 1nvp | A | 159-252 | 3 |
| 1nvp | A | 253-338 | 4 |
| 1jfi | C | 356-456 | 5 |
| 1jfi | C | 457-538 | 6 |
| 1c9b | B | 158-252 | 7 |
| 1c9b | B | 253-337 | 8 |
| 1c9b | F | 158-252 | 9 |
| 1c9b | F | 253-337 | 10 |
| 1c9b | J | 158-252 | 11 |
| 1c9b | J | 253-337 | 12 |
| 1c9b | N | 158-252 | 13 |
| 1c9b | N | 253-337 | 14 |
| 1c9b | R | 158-252 | 15 |
| 1c9b | R | 253-337 | 16 |
| 1tgh | A | 155-252 | 17 |
| 1tgh | A | 253-334 | 18 |
| 1qna | A | 17-115 | 19 |
| 1qna | A | 116-198 | 20 |
| 1qna | B | 12-115 | 21 |
| 1qna | B | 116-197 | 22 |
| 1qn4 | A | 16-115 | 23 |
| 1qn4 | A | 116-198 | 24 |
| 1qn4 | B | 12-115 | 25 |
| 1qn4 | B | 116-198 | 26 |
| 1qn5 | A | 16-115 | 27 |
| 1qn5 | A | 116-198 | 28 |
| 1qn5 | B | 12-115 | 29 |
| 1qn5 | B | 116-197 | 30 |
| 1qn9 | A | 16-115 | 31 |
| 1qn9 | A | 116-198 | 32 |
| 1qn9 | B | 12-115 | 33 |
| 1qn9 | B | 116-197 | 34 |
| 1qne | A | 12-115 | 35 |
| 1qne | A | 116-198 | 36 |
| 1qne | B | 11-115 | 37 |
| 1qne | B | 116-198 | 38 |
| 1vok | A | 7-115 | 39 |
| 1vok | A | 116-198 | 40 |
| 1vok | B | 12-115 | 41 |
| 1vok | B | 116-199 | 42 |
| 1qn3 | A | 16-115 | 43 |
| 1qn3 | A | 116-198 | 44 |
| 1qn3 | B | 12-115 | 45 |
| 1qn3 | B | 116-198 | 46 |
| 1qn8 | A | 16-115 | 47 |
| 1qn8 | A | 116-198 | 48 |
| 1qn8 | B | 12-115 | 49 |
| 1qn8 | B | 116-198 | 50 |
| 1qn6 | A | 15-115 | 51 |
| 1qn6 | A | 116-198 | 52 |
| 1qn6 | B | 12-115 | 53 |
| 1qn6 | B | 116-198 | 54 |
| 1qnb | A | 16-115 | 55 |
| 1qnb | A | 116-198 | 56 |
| 1qnb | B | 12-115 | 57 |
| 1qnb | B | 116-198 | 58 |
| 1qn7 | A | 13-115 | 59 |
| 1qn7 | A | 116-198 | 60 |
| 1qn7 | B | 12-115 | 61 |
| 1qn7 | B | 116-197 | 62 |
| 1qnc | A | 16-115 | 63 |
| 1qnc | A | 116-198 | 64 |
| 1qnc | B | 12-115 | 65 |
| 1qnc | B | 116-198 | 66 |
| 1vol | B | 12-115 | 67 |
| 1vol | B | 116-198 | 68 |
| 1nh2 | A | 61-155 | 69 |
| 1nh2 | A | 156-240 | 70 |
| 1ytb | A | 61-155 | 71 |
| 1ytb | A | 156-240 | 72 |
| 1ytb | B | 61-155 | 73 |
| 1ytb | B | 156-240 | 74 |
| 1rm1 | A | 61-155 | 75 |
| 1rm1 | A | 156-240 | 76 |
| 1ytf | A | 61-155 | 77 |
| 1ytf | A | 156-240 | 78 |
| 1tbp | A | 61-155 | 79 |
| 1tbp | A | 156-240 | 80 |
| 1tbp | B | 61-155 | 81 |
| 1tbp | B | 156-240 | 82 |
| 1ngm | A | 61-155 | 83 |
| 1ngm | A | 156-240 | 84 |
| 1ngm | E | 61-155 | 85 |
| 1ngm | E | 156-240 | 86 |
| 1ngm | I | 61-155 | 87 |
| 1ngm | I | 156-240 | 88 |
| 1ngm | M | 61-155 | 89 |
| 1ngm | M | 156-240 | 90 |
| 1tba | B | 61-155 | 91 |
| 1tba | B | 156-240 | 92 |
| 1ais | A | 1-92 | 93 |
| 1ais | A | 93-181 | 94 |
| 1d3u | A | 1-92 | 95 |
| 1d3u | A | 93-181 | 96 |
| 1pcz | A | 2-92 | 97 |
| 1pcz | A | 93-184 | 98 |
| 1pcz | B | 2-92 | 99 |
| 1pcz | B | 93-184 | 100 |
| 1mp9 | A | 5-96 | 101 |
| 1mp9 | A | 97-197 | 102 |
| 1mp9 | B | 3-96 | 103 |
| 1mp9 | B | 97-191 | 104 |
Example 1cdw:
| Protein domain: | TATA-box binding protein (TBP), C-terminal domain |
| Species: | Human (Homo sapiens) [TaxId: 9606] |
