Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/4qr9.std.txt Дата изменения: Wed Sep 23 15:56:39 2015 Дата индексирования: Mon Apr 11 05:18:35 2016 Кодировка:

REM -------------------------------------------------------------------- 4QR9
REM 4QR9
REM STRIDE: Knowledge-based secondary structure assignment 4QR9
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4QR9
REM 4QR9
REM Residue accessible surface area calculation 4QR9
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4QR9
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4QR9
REM 4QR9
REM ------------------------ General information ----------------------- 4QR9
REM 4QR9
HDR DNA BINDING PROTEIN 30-JUN-14 4QR9 4QR9
CMP MOL_ID: 1; 4QR9
CMP MOLECULE: HIGH MOBILITY GROUP PROTEIN B1; 4QR9
CMP CHAIN: A, B; 4QR9
CMP FRAGMENT: RESIDUES 8-81; 4QR9
CMP SYNONYM: AMPHOTERIN, HEPARIN-BINDING PROTEIN P30, HIGH MOBIL 4QR9
CMP PROTEIN 1, HMG-1; 4QR9
CMP ENGINEERED: YES; 4QR9
CMP MOL_ID: 2; 4QR9
CMP MOLECULE: DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3'); 4QR9
CMP CHAIN: C, D, E, F; 4QR9
CMP ENGINEERED: YES 4QR9
SRC MOL_ID: 1; 4QR9
SRC ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; 4QR9
SRC ORGANISM_COMMON: BROWN RAT,RAT,RATS; 4QR9
SRC ORGANISM_TAXID: 10116; 4QR9
SRC GENE: HMGB1, HMG-1, HMG1; 4QR9
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4QR9
SRC EXPRESSION_SYSTEM_TAXID: 562; 4QR9
SRC EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; 4QR9
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 4QR9
SRC EXPRESSION_SYSTEM_PLASMID: PGEX2T; 4QR9
SRC MOL_ID: 2; 4QR9
SRC SYNTHETIC: YES; 4QR9
SRC ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; 4QR9
SRC ORGANISM_TAXID: 32630 4QR9
AUT R.SANCHEZ-GIRALDO,F.J.ACOSTA-REYES,C.S.MALARKEY,N.SAPERAS, 4QR9
AUT M.E.A.CHURCHILL,J.L.CAMPOS 4QR9
REM 4QR9
REM -------------------- Secondary structure summary ------------------- 4QR9
REM 4QR9
CHN /data/npidb/pdb/pdb_new/all/pdb4qr9.pdb A 4QR9
REM 4QR9
REM . . . . . 4QR9
SEQ 1 GSKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 50 4QR9
STR HHHHHHHHHHHHHHHHTTTT BHHHHHHHHHHHHHH TTT 4QR9
REM 4QR9
REM . . 4QR9
SEQ 51 EKGKFEDMAKADKARYEREMKTYIP 75 4QR9
STR THHHHHHHHHHHHHHHHHHHHH 4QR9
REM 4QR9
CHN /data/npidb/pdb/pdb_new/all/pdb4qr9.pdb B 4QR9
REM 4QR9
REM . . . . . 4QR9
SEQ 1 GSKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 50 4QR9
STR HHHHHHHHHHHHHHHHTTTT BHHHHHHHHHHHHHH HH 4QR9
REM 4QR9
REM . . 4QR9
SEQ 51 EKGKFEDMAKADKARYEREMKTYIP 75 4QR9
STR HHHHHHHHHHHHHHHHHHHHH 4QR9
REM 4QR9
REM 4QR9
REM 4QR9
LOC AlphaHelix SER 14 A LYS 29 A 4QR9
LOC AlphaHelix PHE 37 A THR 50 A 4QR9
LOC AlphaHelix LYS 56 A THR 76 A 4QR9
LOC AlphaHelix SER 14 B LYS 29 B 4QR9
LOC AlphaHelix PHE 37 B THR 50 B 4QR9
LOC AlphaHelix ALA 53 B LYS 75 B 4QR9
LOC TurnI HIS 30 A ALA 33 A 4QR9
LOC TurnIV SER 52 A GLU 55 A 4QR9
LOC TurnI ALA 53 A LYS 56 A 4QR9
LOC TurnI HIS 30 B ALA 33 B 4QR9
LOC Disulfide CYS 22 A CYS 44 A PDB 4QR9
REM 4QR9
REM --------------- Detailed secondary structure assignment------------- 4QR9
REM 4QR9
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4QR9
ASG GLY A 5 1 C Coil 360.00 -179.72 122.7 4QR9
ASG SER A 6 2 C Coil -114.67 162.05 98.4 4QR9
ASG LYS A 7 3 C Coil -65.54 121.05 120.3 4QR9
ASG PRO A 8 4 C Coil -53.61 145.57 10.8 4QR9
ASG ARG A 9 5 C Coil -55.60 144.38 187.9 4QR9
ASG GLY A 10 6 C Coil -59.56 161.94 47.0 4QR9
ASG LYS A 11 7 C Coil -66.60 132.52 111.7 4QR9
ASG MET A 12 8 C Coil -90.30 121.15 62.1 4QR9
ASG SER A 13 9 C Coil -73.97 170.15 61.9 4QR9
ASG SER A 14 10 H AlphaHelix -61.92 -38.16 28.1 4QR9
ASG TYR A 15 11 H AlphaHelix -63.30 -42.69 61.3 4QR9
ASG ALA A 16 12 H AlphaHelix -57.01 -44.62 31.8 4QR9
ASG PHE A 17 13 H AlphaHelix -62.45 -39.78 34.2 4QR9
ASG PHE A 18 14 H AlphaHelix -63.43 -36.67 12.0 4QR9
ASG VAL A 19 15 H AlphaHelix -63.66 -36.16 37.6 4QR9
ASG GLN A 20 16 H AlphaHelix -59.58 -42.73 110.5 4QR9
ASG THR A 21 17 H AlphaHelix -63.13 -41.85 38.7 4QR9
ASG CYS A 22 18 H AlphaHelix -53.75 -40.32 16.6 4QR9
ASG ARG A 23 19 H AlphaHelix -68.15 -40.26 70.6 4QR9
ASG GLU A 24 20 H AlphaHelix -53.32 -51.13 89.8 4QR9
ASG GLU A 25 21 H AlphaHelix -57.63 -49.40 78.6 4QR9
ASG HIS A 26 22 H AlphaHelix -59.20 -41.64 42.5 4QR9
ASG LYS A 27 23 H AlphaHelix -60.68 -38.97 98.9 4QR9
ASG LYS A 28 24 H AlphaHelix -68.20 -47.11 152.0 4QR9
ASG LYS A 29 25 H AlphaHelix -66.61 -28.13 148.5 4QR9
ASG HIS A 30 26 T Turn -142.92 66.85 104.8 4QR9
ASG PRO A 31 27 T Turn -55.51 -28.51 101.6 4QR9
ASG ASP A 32 28 T Turn -75.05 -44.80 164.1 4QR9
ASG ALA A 33 29 T Turn -64.81 145.99 43.0 4QR9
ASG SER A 34 30 C Coil -71.88 150.05 67.0 4QR9
ASG VAL A 35 31 C Coil -75.33 128.53 19.8 4QR9
ASG ASN A 36 32 B Bridge -87.71 101.67 46.0 4QR9
ASG PHE A 37 33 H AlphaHelix -59.91 -43.66 98.2 4QR9
ASG SER A 38 34 H AlphaHelix -62.30 -50.56 63.9 4QR9
ASG GLU A 39 35 H AlphaHelix -64.04 -38.76 92.9 4QR9
ASG PHE A 40 36 H AlphaHelix -62.11 -46.11 36.4 4QR9
ASG SER A 41 37 H AlphaHelix -60.64 -47.07 67.3 4QR9
ASG LYS A 42 38 H AlphaHelix -60.31 -44.93 127.9 4QR9
ASG LYS A 43 39 H AlphaHelix -62.01 -43.59 126.8 4QR9
ASG CYS A 44 40 H AlphaHelix -64.04 -45.35 3.9 4QR9
ASG SER A 45 41 H AlphaHelix -63.37 -42.95 36.3 4QR9
ASG GLU A 46 42 H AlphaHelix -59.44 -43.27 110.8 4QR9
ASG ARG A 47 43 H AlphaHelix -62.84 -48.55 114.9 4QR9
ASG TRP A 48 44 H AlphaHelix -57.34 -41.36 38.1 4QR9
ASG LYS A 49 45 H AlphaHelix -55.19 -29.74 135.3 4QR9
ASG THR A 50 46 H AlphaHelix -101.37 -3.22 97.5 4QR9
ASG MET A 51 47 C Coil -71.53 147.81 22.4 4QR9
ASG SER A 52 48 T Turn -82.86 161.90 58.7 4QR9
ASG ALA A 53 49 T Turn -57.33 -33.45 78.7 4QR9
ASG LYS A 54 50 T Turn -63.27 -52.48 188.6 4QR9
ASG GLU A 55 51 T Turn -60.36 -39.27 82.1 4QR9
ASG LYS A 56 52 H AlphaHelix -61.53 -24.40 41.7 4QR9
ASG GLY A 57 53 H AlphaHelix -67.94 -36.18 15.0 4QR9
ASG LYS A 58 54 H AlphaHelix -64.60 -32.31 113.6 4QR9
ASG PHE A 59 55 H AlphaHelix -76.40 -35.97 7.2 4QR9
ASG GLU A 60 56 H AlphaHelix -63.55 -35.32 79.6 4QR9
ASG ASP A 61 57 H AlphaHelix -71.32 -37.49 108.9 4QR9
ASG MET A 62 58 H AlphaHelix -60.07 -39.10 68.8 4QR9
ASG ALA A 63 59 H AlphaHelix -70.90 -35.30 18.8 4QR9
ASG LYS A 64 60 H AlphaHelix -62.90 -46.37 141.6 4QR9
ASG ALA A 65 61 H AlphaHelix -58.18 -43.42 62.9 4QR9
ASG ASP A 66 62 H AlphaHelix -74.60 -31.03 26.1 4QR9
ASG LYS A 67 63 H AlphaHelix -55.39 -37.78 88.2 4QR9
ASG ALA A 68 64 H AlphaHelix -70.39 -46.62 44.4 4QR9
ASG ARG A 69 65 H AlphaHelix -50.66 -50.84 35.5 4QR9
ASG TYR A 70 66 H AlphaHelix -62.54 -46.38 62.1 4QR9
ASG GLU A 71 67 H AlphaHelix -60.85 -43.41 93.1 4QR9
ASG ARG A 72 68 H AlphaHelix -60.94 -55.43 141.9 4QR9
ASG GLU A 73 69 H AlphaHelix -61.79 -30.88 75.3 4QR9
ASG MET A 74 70 H AlphaHelix -72.67 -22.10 67.2 4QR9
ASG LYS A 75 71 H AlphaHelix -54.07 -42.49 163.7 4QR9
ASG THR A 76 72 H AlphaHelix -97.91 0.74 111.0 4QR9
ASG TYR A 77 73 C Coil -81.48 128.91 62.1 4QR9
ASG ILE A 78 74 C Coil -120.22 111.55 149.0 4QR9
ASG PRO A 79 75 C Coil -87.90 360.00 115.4 4QR9
ASG GLY B 5 1 C Coil 360.00 -178.71 132.8 4QR9
ASG SER B 6 2 C Coil -111.96 165.27 102.5 4QR9
ASG LYS B 7 3 C Coil -64.05 126.38 89.4 4QR9
ASG PRO B 8 4 C Coil -51.13 144.29 11.3 4QR9
ASG ARG B 9 5 C Coil -58.05 147.24 171.7 4QR9
ASG GLY B 10 6 C Coil -65.67 163.70 32.4 4QR9
ASG LYS B 11 7 C Coil -64.77 132.49 111.4 4QR9
ASG MET B 12 8 C Coil -92.54 121.14 50.0 4QR9
ASG SER B 13 9 C Coil -75.11 168.64 60.9 4QR9
ASG SER B 14 10 H AlphaHelix -61.61 -37.73 27.3 4QR9
ASG TYR B 15 11 H AlphaHelix -64.92 -42.95 62.9 4QR9
ASG ALA B 16 12 H AlphaHelix -55.80 -44.94 32.7 4QR9
ASG PHE B 17 13 H AlphaHelix -60.22 -40.62 34.9 4QR9
ASG PHE B 18 14 H AlphaHelix -61.45 -41.57 3.8 4QR9
ASG VAL B 19 15 H AlphaHelix -62.52 -33.27 39.0 4QR9
ASG GLN B 20 16 H AlphaHelix -59.18 -43.32 110.3 4QR9
ASG THR B 21 17 H AlphaHelix -66.58 -37.61 31.8 4QR9
ASG CYS B 22 18 H AlphaHelix -56.36 -40.78 9.1 4QR9
ASG ARG B 23 19 H AlphaHelix -64.80 -41.90 84.2 4QR9
ASG GLU B 24 20 H AlphaHelix -53.52 -52.08 117.6 4QR9
ASG GLU B 25 21 H AlphaHelix -56.89 -47.64 69.9 4QR9
ASG HIS B 26 22 H AlphaHelix -62.03 -39.74 42.8 4QR9
ASG LYS B 27 23 H AlphaHelix -64.06 -40.87 102.5 4QR9
ASG LYS B 28 24 H AlphaHelix -65.86 -46.64 167.5 4QR9
ASG LYS B 29 25 H AlphaHelix -68.58 -29.95 147.9 4QR9
ASG HIS B 30 26 T Turn -142.14 63.67 103.5 4QR9
ASG PRO B 31 27 T Turn -51.74 -29.85 69.9 4QR9
ASG ASP B 32 28 T Turn -87.20 -29.96 163.4 4QR9
ASG ALA B 33 29 T Turn -65.23 140.19 46.8 4QR9
ASG SER B 34 30 C Coil -76.53 150.37 67.8 4QR9
ASG VAL B 35 31 C Coil -72.54 126.76 21.8 4QR9
ASG ASN B 36 32 B Bridge -90.50 97.82 60.5 4QR9
ASG PHE B 37 33 H AlphaHelix -55.13 -42.40 96.9 4QR9
ASG SER B 38 34 H AlphaHelix -61.04 -50.09 59.2 4QR9
ASG GLU B 39 35 H AlphaHelix -70.72 -37.05 69.8 4QR9
ASG PHE B 40 36 H AlphaHelix -60.21 -45.41 37.1 4QR9
ASG SER B 41 37 H AlphaHelix -61.67 -45.06 66.5 4QR9
ASG LYS B 42 38 H AlphaHelix -61.38 -43.42 107.9 4QR9
ASG LYS B 43 39 H AlphaHelix -66.30 -37.50 128.4 4QR9
ASG CYS B 44 40 H AlphaHelix -63.12 -45.25 3.0 4QR9
ASG SER B 45 41 H AlphaHelix -67.49 -38.85 39.3 4QR9
ASG GLU B 46 42 H AlphaHelix -58.27 -44.43 112.8 4QR9
ASG ARG B 47 43 H AlphaHelix -61.54 -45.38 85.0 4QR9
ASG TRP B 48 44 H AlphaHelix -56.97 -42.09 41.1 4QR9
ASG LYS B 49 45 H AlphaHelix -60.26 -36.38 149.8 4QR9
ASG THR B 50 46 H AlphaHelix -99.59 -9.85 104.2 4QR9
ASG MET B 51 47 C Coil -62.60 146.09 10.5 4QR9
ASG SER B 52 48 C Coil -73.73 157.21 56.8 4QR9
ASG ALA B 53 49 H AlphaHelix -58.83 -33.20 87.6 4QR9
ASG LYS B 54 50 H AlphaHelix -64.86 -55.63 184.3 4QR9
ASG GLU B 55 51 H AlphaHelix -57.05 -44.88 72.3 4QR9
ASG LYS B 56 52 H AlphaHelix -56.61 -34.16 42.1 4QR9
ASG GLY B 57 53 H AlphaHelix -60.22 -37.25 17.1 4QR9
ASG LYS B 58 54 H AlphaHelix -65.06 -34.25 117.2 4QR9
ASG PHE B 59 55 H AlphaHelix -74.42 -34.93 16.4 4QR9
ASG GLU B 60 56 H AlphaHelix -67.19 -32.76 92.7 4QR9
ASG ASP B 61 57 H AlphaHelix -72.77 -36.54 92.0 4QR9
ASG MET B 62 58 H AlphaHelix -58.72 -39.61 82.1 4QR9
ASG ALA B 63 59 H AlphaHelix -69.74 -37.85 19.6 4QR9
ASG LYS B 64 60 H AlphaHelix -62.01 -47.86 129.0 4QR9
ASG ALA B 65 61 H AlphaHelix -57.75 -41.67 63.6 4QR9
ASG ASP B 66 62 H AlphaHelix -72.98 -31.24 26.5 4QR9
ASG LYS B 67 63 H AlphaHelix -55.78 -41.99 93.0 4QR9
ASG ALA B 68 64 H AlphaHelix -68.66 -44.00 52.5 4QR9
ASG ARG B 69 65 H AlphaHelix -50.87 -52.90 40.0 4QR9
ASG TYR B 70 66 H AlphaHelix -63.59 -44.10 52.7 4QR9
ASG GLU B 71 67 H AlphaHelix -64.30 -39.65 89.3 4QR9
ASG ARG B 72 68 H AlphaHelix -63.85 -53.08 151.1 4QR9
ASG GLU B 73 69 H AlphaHelix -62.77 -30.87 63.9 4QR9
ASG MET B 74 70 H AlphaHelix -71.61 -20.55 64.5 4QR9
ASG LYS B 75 71 H AlphaHelix -58.59 -26.21 169.9 4QR9
ASG THR B 76 72 C Coil -116.79 15.09 116.4 4QR9
ASG TYR B 77 73 C Coil -89.83 129.26 67.7 4QR9
ASG ILE B 78 74 C Coil -120.06 111.02 150.8 4QR9
ASG PRO B 79 75 C Coil -82.84 360.00 112.3 4QR9