Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/4f6m.std.txt Дата изменения: Wed Oct 10 13:12:40 2012 Дата индексирования: Mon Feb 4 00:32:31 2013 Кодировка:

REM -------------------------------------------------------------------- 4F6M
REM 4F6M
REM STRIDE: Knowledge-based secondary structure assignment 4F6M
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4F6M
REM 4F6M
REM Residue accessible surface area calculation 4F6M
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4F6M
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4F6M
REM 4F6M
REM ------------------------ General information ----------------------- 4F6M
REM 4F6M
HDR DNA BINDING PROTEIN/DNA 15-MAY-12 4F6M 4F6M
CMP MOL_ID: 1; 4F6M
CMP MOLECULE: TRANSCRIPTIONAL REGULATOR KAISO; 4F6M
CMP CHAIN: A; 4F6M
CMP FRAGMENT: ZINC FINGER DNA BINDING DOMAIN; 4F6M
CMP SYNONYM: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 33; 4F6M
CMP ENGINEERED: YES; 4F6M
CMP MOL_ID: 2; 4F6M
CMP MOLECULE: DNA (5'- 4F6M
CMP D(*GP*TP*GP*CP*TP*TP*CP*CP*TP*GP*CP*CP*AP*AP*TP*AP*AP*CP*G)- 4F6M
CMP CHAIN: D; 4F6M
CMP ENGINEERED: YES; 4F6M
CMP OTHER_DETAILS: KAISO BINDING SEQUENCE DNA STRAND 1; 4F6M
CMP MOL_ID: 3; 4F6M
CMP MOLECULE: DNA (5'- 4F6M
CMP D(*CP*GP*TP*TP*AP*TP*TP*GP*GP*CP*AP*GP*GP*AP*AP*GP*CP*AP*C)- 4F6M
CMP CHAIN: E; 4F6M
CMP ENGINEERED: YES; 4F6M
CMP OTHER_DETAILS: KAISO BINDING SEQUENCE DNA STRAND 2 4F6M
SRC MOL_ID: 1; 4F6M
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 4F6M
SRC ORGANISM_COMMON: HUMAN; 4F6M
SRC ORGANISM_TAXID: 9606; 4F6M
SRC GENE: ZBTB33, KAISO, ZNF348; 4F6M
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4F6M
SRC EXPRESSION_SYSTEM_TAXID: 469008; 4F6M
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3)[DNAY]; 4F6M
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 4F6M
SRC EXPRESSION_SYSTEM_PLASMID: PET21D; 4F6M
SRC MOL_ID: 2; 4F6M
SRC SYNTHETIC: YES; 4F6M
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 4F6M
SRC ORGANISM_TAXID: 9606; 4F6M
SRC OTHER_DETAILS: THIS SEQUENCE OCCURS IN HUMANS; 4F6M
SRC MOL_ID: 3; 4F6M
SRC SYNTHETIC: YES; 4F6M
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 4F6M
SRC ORGANISM_TAXID: 9606; 4F6M
SRC OTHER_DETAILS: THIS SEQUENCE OCCURS IN HUMANS 4F6M
AUT B.A.BUCK-KOEHNTOP,R.L.STANFIELD,D.C.EKIERT,M.A.MARTINEZ-YAMOU 4F6M
AUT H.J.DYSON,I.A.WILSON,P.E.WRIGHT 4F6M
REM 4F6M
REM -------------------- Secondary structure summary ------------------- 4F6M
REM 4F6M
CHN /data/npidb/pdb/pdb_new/all/pdb4f6m.pdb A 4F6M
REM 4F6M
REM . . . . . 4F6M
SEQ 1 DHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 50 4F6M
STR EEEEEETTEEEEEETTTT EETTHHHHHHHHHHHHTTTTEETTTT EE 4F6M
REM 4F6M
REM . . . . . 4F6M
SEQ 51 PLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDS 100 4F6M
STR HHHHHHHHHHHH EEETTTT EE HHHHHHHHHHHH TTTTTT 4F6M
REM 4F6M
REM . 4F6M
SEQ 101 KLYRLHPCRSLQIRQY 116 4F6M
STR T EEE TTTTT 4F6M
REM 4F6M
REM 4F6M
REM 4F6M
LOC AlphaHelix LEU 506 A SER 517 A 4F6M
LOC AlphaHelix ALA 534 A THR 545 A 4F6M
LOC AlphaHelix TYR 562 A HIS 573 A 4F6M
LOC Strand HIS 483 A VAL 488 A 4F6M
LOC Strand ARG 491 A CYS 496 A 4F6M
LOC Strand SER 502 A TYR 503 A 4F6M
LOC Strand TYR 522 A PRO 523 A 4F6M
LOC Strand VAL 530 A PHE 531 A 4F6M
LOC Strand TYR 550 A CYS 552 A 4F6M
LOC Strand SER 558 A PHE 559 A 4F6M
LOC Strand TYR 584 A LEU 586 A 4F6M
LOC TurnIV ILE 487 A GLY 490 A 4F6M
LOC TurnIV VAL 488 A ARG 491 A 4F6M
LOC TurnIV CYS 496 A CYS 499 A 4F6M
LOC TurnI ILE 497 A LYS 500 A 4F6M
LOC TurnVIII TYR 503 A LEU 506 A 4F6M
LOC TurnVIII TRP 518 A LYS 521 A 4F6M
LOC TurnI CYS 524 A CYS 527 A 4F6M
LOC TurnI CYS 552 A CYS 555 A 4F6M
LOC TurnI LEU 553 A GLY 556 A 4F6M
LOC TurnI ASP 576 A GLY 579 A 4F6M
LOC TurnIV GLY 579 A LYS 582 A 4F6M
LOC TurnI CYS 589 A LEU 592 A 4F6M
LOC TurnIV ARG 590 A GLN 593 A 4F6M
REM 4F6M
REM --------------- Detailed secondary structure assignment------------- 4F6M
REM 4F6M
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4F6M
ASG ASP A 482 1 C Coil 360.00 134.96 118.0 4F6M
ASG HIS A 483 2 E Strand -163.92 179.00 53.1 4F6M
ASG TYR A 484 3 E Strand -137.75 161.36 103.7 4F6M
ASG GLU A 485 4 E Strand -99.13 146.28 107.8 4F6M
ASG LEU A 486 5 E Strand -131.54 104.47 78.1 4F6M
ASG ILE A 487 6 E Strand -97.51 116.97 111.4 4F6M
ASG VAL A 488 7 E Strand -118.34 142.40 59.1 4F6M
ASG ASP A 489 8 T Turn -4.78 83.64 156.0 4F6M
ASG GLY A 490 9 T Turn 89.43 -46.55 74.0 4F6M
ASG ARG A 491 10 E Strand -80.65 141.73 156.5 4F6M
ASG VAL A 492 11 E Strand -98.83 138.62 52.7 4F6M
ASG TYR A 493 12 E Strand -126.98 151.10 47.3 4F6M
ASG TYR A 494 13 E Strand -113.79 123.36 46.3 4F6M
ASG ILE A 495 14 E Strand -108.26 127.87 7.4 4F6M
ASG CYS A 496 15 E Strand -66.78 129.15 0.0 4F6M
ASG ILE A 497 16 T Turn -64.79 -28.78 91.6 4F6M
ASG VAL A 498 17 T Turn -79.40 -57.58 91.5 4F6M
ASG CYS A 499 18 T Turn -110.36 -3.14 44.1 4F6M
ASG LYS A 500 19 T Turn 68.71 12.06 153.1 4F6M
ASG ARG A 501 20 C Coil -64.29 147.54 151.2 4F6M
ASG SER A 502 21 E Strand -109.85 146.28 72.7 4F6M
ASG TYR A 503 22 E Strand -132.57 136.71 42.0 4F6M
ASG VAL A 504 23 T Turn -72.95 -22.94 111.0 4F6M
ASG CYS A 505 24 T Turn -134.59 149.47 54.2 4F6M
ASG LEU A 506 25 H AlphaHelix -62.75 -34.53 52.7 4F6M
ASG THR A 507 26 H AlphaHelix -56.01 -49.05 108.8 4F6M
ASG SER A 508 27 H AlphaHelix -56.32 -43.03 24.1 4F6M
ASG LEU A 509 28 H AlphaHelix -62.00 -47.58 0.0 4F6M
ASG ARG A 510 29 H AlphaHelix -55.39 -49.81 130.4 4F6M
ASG ARG A 511 30 H AlphaHelix -55.05 -47.61 132.7 4F6M
ASG HIS A 512 31 H AlphaHelix -64.64 -35.33 18.6 4F6M
ASG PHE A 513 32 H AlphaHelix -66.19 -25.64 40.1 4F6M
ASG ASN A 514 33 H AlphaHelix -58.84 -22.28 11.4 4F6M
ASG ILE A 515 34 H AlphaHelix -64.14 -27.06 64.4 4F6M
ASG HIS A 516 35 H AlphaHelix -90.93 -39.56 67.2 4F6M
ASG SER A 517 36 H AlphaHelix -93.98 -23.80 57.1 4F6M
ASG TRP A 518 37 T Turn 49.18 30.94 98.1 4F6M
ASG GLU A 519 38 T Turn -64.10 -43.77 147.7 4F6M
ASG LYS A 520 39 T Turn -104.33 144.15 106.7 4F6M
ASG LYS A 521 40 T Turn -115.93 138.43 132.7 4F6M
ASG TYR A 522 41 E Strand -122.86 80.88 53.3 4F6M
ASG PRO A 523 42 E Strand -77.65 137.05 63.0 4F6M
ASG CYS A 524 43 T Turn -60.51 135.88 8.0 4F6M
ASG ARG A 525 44 T Turn -86.07 0.31 146.3 4F6M
ASG TYR A 526 45 T Turn -110.45 -21.56 106.5 4F6M
ASG CYS A 527 46 T Turn -149.76 -163.17 52.6 4F6M
ASG GLU A 528 47 C Coil -85.25 -7.11 185.7 4F6M
ASG LYS A 529 48 C Coil -70.65 143.76 125.5 4F6M
ASG VAL A 530 49 E Strand -127.34 134.23 68.1 4F6M
ASG PHE A 531 50 E Strand -120.22 145.34 38.7 4F6M
ASG PRO A 532 51 C Coil -79.69 -10.50 21.0 4F6M
ASG LEU A 533 52 C Coil -132.39 141.41 11.9 4F6M
ASG ALA A 534 53 H AlphaHelix -54.92 -45.88 41.5 4F6M
ASG GLU A 535 54 H AlphaHelix -61.24 -34.89 108.7 4F6M
ASG TYR A 536 55 H AlphaHelix -64.67 -40.95 100.5 4F6M
ASG ARG A 537 56 H AlphaHelix -65.45 -43.79 66.9 4F6M
ASG THR A 538 57 H AlphaHelix -56.27 -46.86 39.3 4F6M
ASG LYS A 539 58 H AlphaHelix -64.11 -40.09 105.8 4F6M
ASG HIS A 540 59 H AlphaHelix -61.22 -42.80 33.8 4F6M
ASG GLU A 541 60 H AlphaHelix -69.48 -26.98 6.0 4F6M
ASG ILE A 542 61 H AlphaHelix -65.09 -37.13 11.8 4F6M
ASG HIS A 543 62 H AlphaHelix -55.65 -41.13 135.9 4F6M
ASG HIS A 544 63 H AlphaHelix -62.06 -45.09 87.7 4F6M
ASG THR A 545 64 H AlphaHelix -77.59 -21.05 51.3 4F6M
ASG GLY A 546 65 C Coil 76.28 11.11 44.4 4F6M
ASG GLU A 547 66 C Coil -62.40 131.43 19.6 4F6M
ASG ARG A 548 67 C Coil -108.45 97.83 167.4 4F6M
ASG ARG A 549 68 C Coil -86.00 -21.14 43.9 4F6M
ASG TYR A 550 69 E Strand -95.61 116.93 25.1 4F6M
ASG GLN A 551 70 E Strand -114.64 125.52 33.3 4F6M
ASG CYS A 552 71 E Strand -67.62 123.11 0.4 4F6M
ASG LEU A 553 72 T Turn -79.73 -16.48 84.1 4F6M
ASG ALA A 554 73 T Turn -73.29 -39.35 63.8 4F6M
ASG CYS A 555 74 T Turn -130.60 -7.23 63.6 4F6M
ASG GLY A 556 75 T Turn 96.92 -13.66 32.2 4F6M
ASG LYS A 557 76 C Coil -64.68 134.00 126.2 4F6M
ASG SER A 558 77 E Strand -101.64 159.55 45.1 4F6M
ASG PHE A 559 78 E Strand -147.82 152.12 32.8 4F6M
ASG ILE A 560 79 C Coil -76.43 -24.68 47.3 4F6M
ASG ASN A 561 80 C Coil -151.75 176.06 31.5 4F6M
ASG TYR A 562 81 H AlphaHelix -62.32 -42.90 73.3 4F6M
ASG GLN A 563 82 H AlphaHelix -56.76 -43.96 128.0 4F6M
ASG PHE A 564 83 H AlphaHelix -72.50 -40.49 115.7 4F6M
ASG MET A 565 84 H AlphaHelix -56.54 -51.64 0.0 4F6M
ASG SER A 566 85 H AlphaHelix -65.88 -39.12 14.2 4F6M
ASG SER A 567 86 H AlphaHelix -69.15 -38.64 76.1 4F6M
ASG HIS A 568 87 H AlphaHelix -59.77 -51.19 17.0 4F6M
ASG ILE A 569 88 H AlphaHelix -61.43 -47.08 2.6 4F6M
ASG LYS A 570 89 H AlphaHelix -60.12 -43.04 108.9 4F6M
ASG SER A 571 90 H AlphaHelix -83.68 -37.67 86.4 4F6M
ASG VAL A 572 91 H AlphaHelix -88.34 -42.24 86.0 4F6M
ASG HIS A 573 92 H AlphaHelix -104.75 1.87 52.6 4F6M
ASG SER A 574 93 C Coil 35.14 53.75 104.7 4F6M
ASG GLN A 575 94 C Coil -136.81 155.26 89.0 4F6M
ASG ASP A 576 95 T Turn -105.41 117.49 75.7 4F6M
ASG PRO A 577 96 T Turn -67.24 -12.89 7.2 4F6M
ASG SER A 578 97 T Turn -73.11 30.43 81.0 4F6M
ASG GLY A 579 98 T Turn 119.00 124.02 31.7 4F6M
ASG ASP A 580 99 T Turn -162.49 29.40 164.9 4F6M
ASG SER A 581 100 T Turn 17.75 115.56 55.2 4F6M
ASG LYS A 582 101 T Turn 78.98 28.85 190.9 4F6M
ASG LEU A 583 102 C Coil -107.45 -8.93 22.9 4F6M
ASG TYR A 584 103 E Strand -135.14 159.47 73.4 4F6M
ASG ARG A 585 104 E Strand -113.38 131.45 124.6 4F6M
ASG LEU A 586 105 E Strand -98.00 110.86 79.0 4F6M
ASG HIS A 587 106 C Coil -73.78 150.04 61.4 4F6M
ASG PRO A 588 107 C Coil -53.51 150.60 97.3 4F6M
ASG CYS A 589 108 T Turn -76.16 110.82 21.3 4F6M
ASG ARG A 590 109 T Turn -103.83 -11.73 224.0 4F6M
ASG SER A 591 110 T Turn -88.99 -15.65 43.4 4F6M
ASG LEU A 592 111 T Turn -151.33 179.85 15.8 4F6M
ASG GLN A 593 112 T Turn -105.02 104.88 175.1 4F6M
ASG ILE A 594 113 C Coil -110.41 -179.37 66.2 4F6M
ASG ARG A 595 114 C Coil -80.74 142.46 230.7 4F6M
ASG GLN A 596 115 C Coil -126.56 135.23 92.3 4F6M
ASG TYR A 597 116 C Coil 84.78 360.00 147.7 4F6M