Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/4b8t.std.txt Дата изменения: Wed Jan 23 17:33:22 2013 Дата индексирования: Mon Feb 4 00:30:43 2013 Кодировка:

REM -------------------------------------------------------------------- 4B8T
REM 4B8T
REM STRIDE: Knowledge-based secondary structure assignment 4B8T
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4B8T
REM 4B8T
REM Residue accessible surface area calculation 4B8T
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4B8T
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4B8T
REM 4B8T
REM ------------------------ General information ----------------------- 4B8T
REM 4B8T
HDR TRANSCRIPTION/RNA 30-AUG-12 4B8T 4B8T
CMP MOL_ID: 1; 4B8T
CMP MOLECULE: KH-TYPE SPLICING REGULATORY PROTEIN; 4B8T
CMP CHAIN: A; 4B8T
CMP FRAGMENT: THIRD KH DOMAIN, RESIDUES 317-418; 4B8T
CMP ENGINEERED: YES; 4B8T
CMP MOL_ID: 2; 4B8T
CMP MOLECULE: 5'-R(*AP*GP*GP*GP*UP)-3'; 4B8T
CMP CHAIN: B 4B8T
SRC MOL_ID: 1; 4B8T
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 4B8T
SRC ORGANISM_COMMON: HUMAN; 4B8T
SRC ORGANISM_TAXID: 9606; 4B8T
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4B8T
SRC EXPRESSION_SYSTEM_TAXID: 562; 4B8T
SRC MOL_ID: 2; 4B8T
SRC SYNTHETIC: YES; 4B8T
SRC ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; 4B8T
SRC ORGANISM_TAXID: 32630 4B8T
AUT G.NICASTRO,M.F.GARCIA-MAYORAL,D.HOLLINGWORTH,G.KELLY,S.R.MART 4B8T
AUT P.BRIATA,R.GHERZI,A.RAMOS 4B8T
REM 4B8T
REM -------------------- Secondary structure summary ------------------- 4B8T
REM 4B8T
CHN /data/npidb/pdb/pdb_new/all/pdb4b8t.pdb A 4B8T
REM 4B8T
REM . . . . . 4B8T
SEQ 1 GAMAYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD 50 4B8T
STR TTTTTT TTTEEEEEETTHHHHHHTTTTHHHHHHHHHH EEEE 4B8T
REM 4B8T
REM . . . . . 4B8T
SEQ 51 GTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGGPGMPPGGRG 100 4B8T
STR EEEEEEE HHHHHHHHHHHHHHHHHHTTTTTTTTTTTT TTTTTT 4B8T
REM 4B8T
REM 4B8T
SEQ 101 RGRGQG 106 4B8T
STR TTTTT 4B8T
REM 4B8T
REM 4B8T
REM 4B8T
LOC AlphaHelix SER 21 A ILE 26 A 4B8T
LOC AlphaHelix GLU 31 A ALA 40 A 4B8T
LOC AlphaHelix PRO 64 A LEU 81 A 4B8T
LOC Strand ILE 13 A PRO 18 A 4B8T
LOC Strand ARG 43 A PHE 46 A 4B8T
LOC Strand GLU 55 A MET 61 A 4B8T
LOC TurnI MET 3 A GLY 6 A 4B8T
LOC TurnIV TYR 5 A ARG 8 A 4B8T
LOC TurnIV GLY 10 A ILE 13 A 4B8T
LOC TurnI PRO 18 A SER 21 A 4B8T
LOC TurnI GLY 27 A GLY 30 A 4B8T
LOC TurnII LEU 81 A GLY 84 A 4B8T
LOC TurnIV SER 83 A PRO 86 A 4B8T
LOC TurnIV GLY 87 A GLY 90 A 4B8T
LOC TurnIV PRO 88 A GLY 91 A 4B8T
LOC TurnIV PRO 89 A PRO 92 A 4B8T
LOC TurnIV GLY 90 A GLY 93 A 4B8T
LOC TurnIV GLY 98 A ARG 101 A 4B8T
LOC TurnIV GLY 100 A ARG 103 A 4B8T
LOC TurnIV ARG 101 A GLY 104 A 4B8T
LOC TurnIV GLY 102 A GLN 105 A 4B8T
LOC GammaInv PRO 95 A GLY 97 A 4B8T
REM 4B8T
REM --------------- Detailed secondary structure assignment------------- 4B8T
REM 4B8T
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4B8T
ASG GLY A 1 1 C Coil 360.00 157.14 93.8 4B8T
ASG ALA A 2 2 C Coil -85.66 67.69 105.7 4B8T
ASG MET A 3 3 T Turn -79.60 82.22 146.8 4B8T
ASG ALA A 4 4 T Turn -67.80 -15.08 84.1 4B8T
ASG TYR A 5 5 T Turn -110.86 34.83 208.0 4B8T
ASG GLY A 6 6 T Turn -90.57 15.07 56.1 4B8T
ASG SER A 7 7 T Turn -79.74 -10.65 114.6 4B8T
ASG ARG A 8 8 T Turn -91.63 125.30 209.9 4B8T
ASG ILE A 9 9 C Coil -90.49 -179.37 78.3 4B8T
ASG GLY A 10 10 T Turn -163.39 -174.61 29.2 4B8T
ASG GLY A 11 11 T Turn -77.67 72.71 63.6 4B8T
ASG GLY A 12 12 T Turn 118.72 109.32 14.7 4B8T
ASG ILE A 13 13 E Strand -114.79 154.16 32.8 4B8T
ASG ASP A 14 14 E Strand -99.91 107.61 78.1 4B8T
ASG VAL A 15 15 E Strand -98.76 134.28 8.6 4B8T
ASG PRO A 16 16 E Strand -87.87 106.50 69.3 4B8T
ASG VAL A 17 17 E Strand -103.92 126.58 1.2 4B8T
ASG PRO A 18 18 E Strand -46.52 130.83 25.1 4B8T
ASG ARG A 19 19 T Turn -65.65 -15.86 94.0 4B8T
ASG HIS A 20 20 T Turn -95.72 12.85 185.3 4B8T
ASG SER A 21 21 H AlphaHelix -136.66 11.95 9.2 4B8T
ASG VAL A 22 22 H AlphaHelix -65.44 -45.77 35.2 4B8T
ASG GLY A 23 23 H AlphaHelix -78.88 -26.42 36.7 4B8T
ASG VAL A 24 24 H AlphaHelix -54.74 -58.85 62.1 4B8T
ASG VAL A 25 25 H AlphaHelix -66.38 -28.55 0.0 4B8T
ASG ILE A 26 26 H AlphaHelix -82.72 -31.54 52.1 4B8T
ASG GLY A 27 27 T Turn 92.58 152.99 13.1 4B8T
ASG ARG A 28 28 T Turn -63.94 -28.86 263.1 4B8T
ASG SER A 29 29 T Turn -113.55 10.91 89.2 4B8T
ASG GLY A 30 30 T Turn 72.93 3.09 20.5 4B8T
ASG GLU A 31 31 H AlphaHelix -65.06 -27.00 109.3 4B8T
ASG MET A 32 32 H AlphaHelix -76.84 -48.77 68.9 4B8T
ASG ILE A 33 33 H AlphaHelix -69.69 -24.31 19.6 4B8T
ASG LYS A 34 34 H AlphaHelix -65.55 -29.69 107.2 4B8T
ASG LYS A 35 35 H AlphaHelix -73.64 -37.87 125.2 4B8T
ASG ILE A 36 36 H AlphaHelix -62.91 -45.86 1.2 4B8T
ASG GLN A 37 37 H AlphaHelix -66.77 -29.53 39.7 4B8T
ASG ASN A 38 38 H AlphaHelix -73.45 -54.76 124.3 4B8T
ASG ASP A 39 39 H AlphaHelix -71.17 -16.29 98.2 4B8T
ASG ALA A 40 40 H AlphaHelix -109.92 -21.47 2.9 4B8T
ASG GLY A 41 41 C Coil 69.27 34.79 37.5 4B8T
ASG VAL A 42 42 C Coil -116.80 168.81 7.8 4B8T
ASG ARG A 43 43 E Strand -106.16 103.22 130.6 4B8T
ASG ILE A 44 44 E Strand -99.70 112.42 8.1 4B8T
ASG GLN A 45 45 E Strand -126.99 112.01 92.3 4B8T
ASG PHE A 46 46 E Strand -59.53 126.73 64.2 4B8T
ASG LYS A 47 47 C Coil -74.59 167.01 66.2 4B8T
ASG GLN A 48 48 C Coil -52.50 -67.08 194.3 4B8T
ASG ASP A 49 49 C Coil 175.24 100.28 69.9 4B8T
ASG ASP A 50 50 C Coil -58.81 -34.71 68.7 4B8T
ASG GLY A 51 51 C Coil 70.69 0.39 46.6 4B8T
ASG THR A 52 52 C Coil -91.04 59.81 106.7 4B8T
ASG GLY A 53 53 C Coil 150.95 174.66 38.5 4B8T
ASG PRO A 54 54 C Coil -82.07 5.07 91.9 4B8T
ASG GLU A 55 55 E Strand -110.59 178.26 68.3 4B8T
ASG LYS A 56 56 E Strand -110.90 140.33 43.5 4B8T
ASG ILE A 57 57 E Strand -98.24 126.53 25.6 4B8T
ASG ALA A 58 58 E Strand -117.00 129.41 0.6 4B8T
ASG HIS A 59 59 E Strand -91.57 98.88 54.1 4B8T
ASG ILE A 60 60 E Strand -83.58 105.02 0.0 4B8T
ASG MET A 61 61 E Strand -104.32 143.70 54.7 4B8T
ASG GLY A 62 62 C Coil 148.56 -159.67 30.1 4B8T
ASG PRO A 63 63 C Coil -67.46 127.35 60.1 4B8T
ASG PRO A 64 64 H AlphaHelix -43.02 -46.75 46.1 4B8T
ASG ASP A 65 65 H AlphaHelix -59.76 -40.08 121.3 4B8T
ASG ARG A 66 66 H AlphaHelix -71.29 -30.20 130.1 4B8T
ASG CYS A 67 67 H AlphaHelix -64.83 -40.30 0.2 4B8T
ASG GLU A 68 68 H AlphaHelix -65.03 -41.78 91.5 4B8T
ASG HIS A 69 69 H AlphaHelix -62.08 -48.09 83.4 4B8T
ASG ALA A 70 70 H AlphaHelix -61.25 -44.53 0.0 4B8T
ASG ALA A 71 71 H AlphaHelix -56.39 -43.24 14.8 4B8T
ASG ARG A 72 72 H AlphaHelix -62.07 -39.57 179.0 4B8T
ASG ILE A 73 73 H AlphaHelix -62.83 -41.42 40.6 4B8T
ASG ILE A 74 74 H AlphaHelix -70.73 -44.79 2.0 4B8T
ASG ASN A 75 75 H AlphaHelix -63.97 -41.32 81.0 4B8T
ASG ASP A 76 76 H AlphaHelix -67.98 -33.32 85.4 4B8T
ASG LEU A 77 77 H AlphaHelix -67.32 -29.83 26.9 4B8T
ASG LEU A 78 78 H AlphaHelix -74.78 -45.06 18.0 4B8T
ASG GLN A 79 79 H AlphaHelix -60.15 -32.20 127.6 4B8T
ASG SER A 80 80 H AlphaHelix -78.61 -15.15 52.4 4B8T
ASG LEU A 81 81 H AlphaHelix -77.85 -20.36 57.2 4B8T
ASG ARG A 82 82 T Turn -74.61 86.93 159.1 4B8T
ASG SER A 83 83 T Turn 63.31 23.06 116.7 4B8T
ASG GLY A 84 84 T Turn -70.54 -66.00 41.9 4B8T
ASG PRO A 85 85 T Turn -78.09 106.84 97.7 4B8T
ASG PRO A 86 86 T Turn -68.28 125.37 120.4 4B8T
ASG GLY A 87 87 T Turn -124.84 105.57 44.3 4B8T
ASG PRO A 88 88 T Turn -54.36 -58.83 109.7 4B8T
ASG PRO A 89 89 T Turn -93.64 172.20 79.7 4B8T
ASG GLY A 90 90 T Turn 85.95 -45.72 74.5 4B8T
ASG GLY A 91 91 T Turn -96.16 -117.84 49.6 4B8T
ASG PRO A 92 92 T Turn -75.45 56.52 132.3 4B8T
ASG GLY A 93 93 T Turn 178.08 97.99 28.4 4B8T
ASG MET A 94 94 C Coil -79.90 122.37 163.8 4B8T
ASG PRO A 95 95 T Turn -65.45 125.66 71.7 4B8T
ASG PRO A 96 96 T Turn -76.94 59.90 128.3 4B8T
ASG GLY A 97 97 T Turn -71.94 148.62 67.1 4B8T
ASG GLY A 98 98 T Turn -76.23 179.19 36.1 4B8T
ASG ARG A 99 99 T Turn -77.15 69.69 255.8 4B8T
ASG GLY A 100 100 T Turn 84.67 -8.41 45.8 4B8T
ASG ARG A 101 101 T Turn -56.24 133.29 199.4 4B8T
ASG GLY A 102 102 T Turn 111.49 -44.26 67.4 4B8T
ASG ARG A 103 103 T Turn -110.65 -39.72 228.1 4B8T
ASG GLY A 104 104 T Turn -84.73 68.86 56.6 4B8T
ASG GLN A 105 105 T Turn -95.20 9.53 182.3 4B8T
ASG GLY A 106 106 C Coil 155.64 360.00 116.3 4B8T