Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/4al7.std.txt Дата изменения: Tue Oct 9 13:43:58 2012 Дата индексирования: Mon Feb 4 00:13:53 2013 Кодировка:

REM -------------------------------------------------------------------- 4AL7
REM 4AL7
REM STRIDE: Knowledge-based secondary structure assignment 4AL7
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4AL7
REM 4AL7
REM Residue accessible surface area calculation 4AL7
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4AL7
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4AL7
REM 4AL7
REM ------------------------ General information ----------------------- 4AL7
REM 4AL7
HDR HYDROLASE/RNA 02-MAR-12 4AL7 4AL7
CMP MOL_ID: 1; 4AL7
CMP MOLECULE: CSY4 ENDORIBONUCLEASE; 4AL7
CMP CHAIN: A; 4AL7
CMP ENGINEERED: YES; 4AL7
CMP MOL_ID: 2; 4AL7
CMP MOLECULE: 5'-R(*CP*UP*GP*CP*CP*GP*UP*AP*UP*AP*GP*GP*CP*AP*G) 4AL7
CMP CHAIN: B; 4AL7
CMP SYNONYM: CRRNA 4AL7
SRC MOL_ID: 1; 4AL7
SRC ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; 4AL7
SRC ORGANISM_TAXID: 287; 4AL7
SRC STRAIN: UCBPP-PA14; 4AL7
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4AL7
SRC EXPRESSION_SYSTEM_TAXID: 469008; 4AL7
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 4AL7
SRC EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; 4AL7
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 4AL7
SRC EXPRESSION_SYSTEM_VECTOR: PHMGWA; 4AL7
SRC MOL_ID: 2; 4AL7
SRC SYNTHETIC: YES; 4AL7
SRC ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; 4AL7
SRC ORGANISM_TAXID: 287; 4AL7
SRC STRAIN: UCBPP-PA14 4AL7
AUT R.E.HAURWITZ,S.H.STERNBERG,J.A.DOUDNA 4AL7
REM 4AL7
REM -------------------- Secondary structure summary ------------------- 4AL7
REM 4AL7
CHN /data/npidb/pdb/pdb_new/all/pdb4al7.pdb A 4AL7
REM 4AL7
REM . . . . . 4AL7
SEQ 1 FTMDHYLDIRLRPDPEFPPAQLMSVLFGKLHQALVAQGGDRIGVSFPDLD 50 4AL7
STR TTTTEEEEEEE BTTB HHHHHHHHHHHHHHHHHHH EEETTTTB 4AL7
REM 4AL7
REM . . . . . 4AL7
SEQ 51 ESRSRLGERLRIHASADDLRALLARPWLEGLRDHLQFGEPAVVPHPTPYR 100 4AL7
STR TTTTB EEEEEE HHHHHHHHH TTTTTTGGGEEE EE EE 4AL7
REM 4AL7
REM . . . . . 4AL7
SEQ 101 QVSRVQALDLPFVTLRSSTGQHFRLFIRHGPLQVTAEEGGFTCYGLSKGG 150 4AL7
STR EEE EEEEETTTT EEEEEEEE B EETTTT EEBT 4AL7
REM 4AL7
REM 4AL7
SEQ 151 FVPWF 155 4AL7
STR EE 4AL7
REM 4AL7
REM 4AL7
REM 4AL7
LOC AlphaHelix PRO 17 A GLN 35 A 4AL7
LOC AlphaHelix ALA 64 A ALA 72 A 4AL7
LOC 310Helix ARG 80 A HIS 82 A 4AL7
LOC Strand HIS 3 A LEU 9 A 4AL7
LOC Strand GLY 41 A SER 43 A 4AL7
LOC Strand ARG 57 A ALA 62 A 4AL7
LOC Strand LEU 83 A PHE 85 A 4AL7
LOC Strand ALA 89 A VAL 90 A 4AL7
LOC Strand TYR 97 A ARG 98 A 4AL7
LOC Strand VAL 100 A ARG 102 A 4AL7
LOC Strand PHE 143 A ARG 147 A 4AL7
LOC Strand HIS 154 A HIS 161 A 4AL7
LOC Strand GLY 172 A PHE 173 A 4AL7
LOC Strand SER 179 A LYS 180 A 4AL7
LOC Strand VAL 184 A PRO 185 A 4AL7
LOC TurnIV PHE -1 A ASP 2 A 4AL7
LOC TurnI ASP 12 A PHE 15 A 4AL7
LOC TurnI PHE 44 A LEU 47 A 4AL7
LOC TurnI ASP 48 A ARG 51 A 4AL7
LOC TurnI GLU 49 A SER 52 A 4AL7
LOC TurnI PRO 74 A GLU 77 A 4AL7
LOC TurnII LEU 76 A LEU 79 A 4AL7
LOC TurnIV GLU 77 A ARG 80 A 4AL7
LOC TurnIV SER 148 A GLY 152 A 4AL7
LOC TurnI THR 174 A GLY 177 A 4AL7
LOC TurnIV SER 179 A GLY 182 A 4AL7
REM 4AL7
REM --------------- Detailed secondary structure assignment------------- 4AL7
REM 4AL7
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4AL7
ASG PHE A -1 1 T Turn 360.00 69.67 111.2 4AL7
ASG THR A 0 2 T Turn -75.35 -2.43 120.3 4AL7
ASG MET A 1 3 T Turn -103.19 72.64 29.7 4AL7
ASG ASP A 2 4 T Turn -105.43 8.80 65.2 4AL7
ASG HIS A 3 5 E Strand -114.16 155.99 36.1 4AL7
ASG TYR A 4 6 E Strand -154.38 166.38 42.9 4AL7
ASG LEU A 5 7 E Strand -143.16 131.89 8.0 4AL7
ASG ASP A 6 8 E Strand -89.95 128.42 18.8 4AL7
ASG ILE A 7 9 E Strand -105.42 117.83 0.2 4AL7
ASG ARG A 8 10 E Strand -100.67 129.88 107.0 4AL7
ASG LEU A 9 11 E Strand -73.73 127.13 11.8 4AL7
ASG ARG A 10 12 C Coil -76.45 135.35 117.5 4AL7
ASG PRO A 11 13 C Coil -61.54 143.98 129.2 4AL7
ASG ASP A 12 14 B Bridge -134.91 128.56 36.0 4AL7
ASG PRO A 13 15 T Turn -50.85 -36.63 140.8 4AL7
ASG GLU A 14 16 T Turn -109.32 -11.13 113.0 4AL7
ASG PHE A 15 17 B Bridge -122.98 122.61 74.7 4AL7
ASG PRO A 16 18 C Coil -64.97 155.36 75.6 4AL7
ASG PRO A 17 19 H AlphaHelix -44.21 -39.46 77.8 4AL7
ASG ALA A 18 20 H AlphaHelix -69.23 -30.73 68.4 4AL7
ASG GLN A 19 21 H AlphaHelix -72.23 -45.53 93.5 4AL7
ASG LEU A 20 22 H AlphaHelix -60.88 -44.15 10.7 4AL7
ASG MET A 21 23 H AlphaHelix -60.48 -40.95 3.4 4AL7
ASG SER A 22 24 H AlphaHelix -64.55 -36.10 13.2 4AL7
ASG VAL A 23 25 H AlphaHelix -70.24 -47.45 64.4 4AL7
ASG LEU A 24 26 H AlphaHelix -52.15 -40.24 0.2 4AL7
ASG PHE A 25 27 H AlphaHelix -79.81 -40.64 1.3 4AL7
ASG GLY A 26 28 H AlphaHelix -56.81 -44.09 14.6 4AL7
ASG LYS A 27 29 H AlphaHelix -64.40 -42.36 24.1 4AL7
ASG LEU A 28 30 H AlphaHelix -60.00 -42.86 0.6 4AL7
ASG HIS A 29 31 H AlphaHelix -51.03 -47.03 38.3 4AL7
ASG GLN A 30 32 H AlphaHelix -60.96 -45.04 130.3 4AL7
ASG ALA A 31 33 H AlphaHelix -62.08 -32.64 5.6 4AL7
ASG LEU A 32 34 H AlphaHelix -73.95 -41.13 12.7 4AL7
ASG VAL A 33 35 H AlphaHelix -61.19 -15.64 88.5 4AL7
ASG ALA A 34 36 H AlphaHelix -100.84 -42.74 62.9 4AL7
ASG GLN A 35 37 H AlphaHelix -57.95 -32.99 45.9 4AL7
ASG GLY A 36 38 C Coil 70.46 168.38 44.4 4AL7
ASG GLY A 37 39 C Coil 100.10 -176.60 65.4 4AL7
ASG ASP A 38 40 C Coil -147.76 19.90 71.5 4AL7
ASG ARG A 39 41 C Coil -103.67 24.01 38.7 4AL7
ASG ILE A 40 42 C Coil -120.07 118.22 12.7 4AL7
ASG GLY A 41 43 E Strand -113.88 166.46 0.0 4AL7
ASG VAL A 42 44 E Strand -132.96 161.93 0.9 4AL7
ASG SER A 43 45 E Strand -150.52 157.21 0.0 4AL7
ASG PHE A 44 46 T Turn -112.06 92.14 0.0 4AL7
ASG PRO A 45 47 T Turn -59.82 -28.28 13.1 4AL7
ASG ASP A 46 48 T Turn -92.28 9.97 58.3 4AL7
ASG LEU A 47 49 T Turn -26.54 131.77 43.6 4AL7
ASG ASP A 48 50 B Bridge -118.57 103.92 60.3 4AL7
ASG GLU A 49 51 T Turn -50.22 -52.57 88.2 4AL7
ASG SER A 50 52 T Turn -60.11 -44.98 104.6 4AL7
ASG ARG A 51 53 T Turn -90.71 5.09 91.1 4AL7
ASG SER A 52 54 T Turn 45.65 47.59 41.2 4AL7
ASG ARG A 53 55 B Bridge -115.46 129.27 42.4 4AL7
ASG LEU A 54 56 C Coil -63.50 -19.01 15.0 4AL7
ASG GLY A 55 57 C Coil 89.73 -178.30 25.1 4AL7
ASG GLU A 56 58 C Coil -95.73 2.94 35.3 4AL7
ASG ARG A 57 59 E Strand -119.55 142.70 50.3 4AL7
ASG LEU A 58 60 E Strand -116.55 118.32 0.0 4AL7
ASG ARG A 59 61 E Strand -105.28 132.88 3.8 4AL7
ASG ILE A 60 62 E Strand -108.80 133.17 0.0 4AL7
ASG HIS A 61 63 E Strand -119.72 131.92 0.0 4AL7
ASG ALA A 62 64 E Strand -169.37 165.23 0.0 4AL7
ASG SER A 63 65 C Coil -63.01 157.64 16.6 4AL7
ASG ALA A 64 66 H AlphaHelix -54.89 -38.47 25.8 4AL7
ASG ASP A 65 67 H AlphaHelix -90.95 -26.25 113.3 4AL7
ASG ASP A 66 68 H AlphaHelix -62.79 -42.16 58.3 4AL7
ASG LEU A 67 69 H AlphaHelix -59.61 -47.14 2.6 4AL7
ASG ARG A 68 70 H AlphaHelix -60.19 -50.46 167.7 4AL7
ASG ALA A 69 71 H AlphaHelix -52.89 -43.20 37.8 4AL7
ASG LEU A 70 72 H AlphaHelix -62.25 -48.17 0.0 4AL7
ASG LEU A 71 73 H AlphaHelix -70.41 -25.73 56.4 4AL7
ASG ALA A 72 74 H AlphaHelix -78.06 11.77 90.9 4AL7
ASG ARG A 73 75 C Coil -100.87 155.35 93.5 4AL7
ASG PRO A 74 76 T Turn -94.27 51.58 92.4 4AL7
ASG TRP A 75 77 T Turn -90.75 -23.66 26.1 4AL7
ASG LEU A 76 78 T Turn -92.54 -6.16 6.4 4AL7
ASG GLU A 77 79 T Turn -47.64 117.75 148.8 4AL7
ASG GLY A 78 80 T Turn 105.51 -15.24 68.3 4AL7
ASG LEU A 79 81 T Turn -114.72 -8.60 23.3 4AL7
ASG ARG A 80 82 G 310Helix -66.37 -28.76 120.6 4AL7
ASG ASP A 81 83 G 310Helix -64.86 -27.29 151.8 4AL7
ASG HIS A 82 84 G 310Helix -87.17 7.69 54.5 4AL7
ASG LEU A 83 85 E Strand -133.26 146.92 3.6 4AL7
ASG GLN A 84 86 E Strand -114.77 141.44 89.3 4AL7
ASG PHE A 85 87 E Strand -111.96 140.19 86.3 4AL7
ASG GLY A 86 88 C Coil -80.88 178.65 35.1 4AL7
ASG GLU A 87 89 C Coil -90.09 134.80 167.4 4AL7
ASG PRO A 88 90 C Coil -44.63 118.09 74.7 4AL7
ASG ALA A 89 91 E Strand -134.31 159.74 30.5 4AL7
ASG VAL A 90 92 E Strand -70.69 134.73 89.1 4AL7
ASG VAL A 91 93 C Coil -59.01 150.80 17.4 4AL7
ASG PRO A 92 94 C Coil -63.62 163.68 59.7 4AL7
ASG HIS A 93 95 C Coil -154.68 147.62 160.9 4AL7
ASG PRO A 94 96 C Coil -80.45 168.02 124.0 4AL7
ASG THR A 95 97 C Coil -146.89 156.80 14.5 4AL7
ASG PRO A 96 98 C Coil -65.02 168.61 48.6 4AL7
ASG TYR A 97 99 E Strand -127.45 148.64 47.7 4AL7
ASG ARG A 98 100 E Strand -143.49 164.01 34.3 4AL7
ASG GLN A 99 101 C Coil -93.69 135.82 68.5 4AL7
ASG VAL A 100 102 E Strand -119.74 113.58 5.2 4AL7
ASG SER A 101 103 E Strand -131.62 156.94 28.7 4AL7
ASG ARG A 102 104 E Strand -78.24 125.58 83.7 4AL7
ASG VAL A 103 105 C Coil -106.94 99.45 23.5 4AL7
ASG GLN A 104 106 C Coil -81.58 360.00 184.2 4AL7
ASG ALA A 138 107 C Coil 360.00 -46.42 155.8 4AL7
ASG LEU A 139 108 C Coil -76.85 104.93 85.0 4AL7
ASG ASP A 140 109 C Coil -80.98 51.73 89.2 4AL7
ASG LEU A 141 110 C Coil -120.73 137.64 30.8 4AL7
ASG PRO A 142 111 C Coil -61.59 158.94 10.5 4AL7
ASG PHE A 143 112 E Strand -152.33 158.73 72.5 4AL7
ASG VAL A 144 113 E Strand -110.90 149.55 0.8 4AL7
ASG THR A 145 114 E Strand -99.56 127.68 62.7 4AL7
ASG LEU A 146 115 E Strand -125.79 178.32 14.7 4AL7
ASG ARG A 147 116 E Strand -134.30 177.18 77.9 4AL7
ASG SER A 148 117 T Turn -164.32 360.00 88.7 4AL7
ASG SER A 150 118 T Turn 360.00 -29.64 131.3 4AL7
ASG THR A 151 119 T Turn -45.26 160.43 64.3 4AL7
ASG GLY A 152 120 T Turn -76.04 -9.64 74.5 4AL7
ASG GLN A 153 121 C Coil -69.14 146.69 89.1 4AL7
ASG HIS A 154 122 E Strand -84.29 140.38 70.8 4AL7
ASG PHE A 155 123 E Strand -137.72 148.90 66.4 4AL7
ASG ARG A 156 124 E Strand -86.10 137.24 150.0 4AL7
ASG LEU A 157 125 E Strand -118.50 118.22 0.2 4AL7
ASG PHE A 158 126 E Strand -93.03 141.41 36.4 4AL7
ASG ILE A 159 127 E Strand -130.80 136.03 0.6 4AL7
ASG ARG A 160 128 E Strand -127.68 126.92 125.9 4AL7
ASG HIS A 161 129 E Strand -89.80 121.41 21.5 4AL7
ASG GLY A 162 130 C Coil -75.89 166.73 5.6 4AL7
ASG PRO A 163 131 C Coil -56.98 145.55 110.0 4AL7
ASG LEU A 164 132 C Coil -69.89 124.74 95.6 4AL7
ASG GLN A 165 133 B Bridge -108.72 158.44 81.7 4AL7
ASG VAL A 166 134 C Coil -76.02 -34.68 131.7 4AL7
ASG THR A 167 135 C Coil -135.08 175.11 93.0 4AL7
ASG ALA A 168 136 C Coil -108.48 119.55 45.4 4AL7
ASG GLU A 169 137 C Coil -75.38 148.19 55.6 4AL7
ASG GLU A 170 138 C Coil -73.24 164.01 102.0 4AL7
ASG GLY A 171 139 C Coil 148.98 167.41 45.4 4AL7
ASG GLY A 172 140 E Strand -111.97 -163.61 10.9 4AL7
ASG PHE A 173 141 E Strand -133.14 152.37 11.1 4AL7
ASG THR A 174 142 T Turn -77.64 -175.41 51.1 4AL7
ASG CYS A 175 143 T Turn -79.59 -0.55 57.6 4AL7
ASG TYR A 176 144 T Turn -98.03 -1.80 40.3 4AL7
ASG GLY A 177 145 T Turn 78.77 10.93 0.9 4AL7
ASG LEU A 178 146 C Coil -95.70 158.69 1.0 4AL7
ASG SER A 179 147 E Strand -63.75 128.77 14.6 4AL7
ASG LYS A 180 148 E Strand -115.43 34.69 119.9 4AL7
ASG GLY A 181 149 B Bridge 136.04 -43.36 23.5 4AL7
ASG GLY A 182 150 T Turn -66.32 163.36 1.8 4AL7
ASG PHE A 183 151 C Coil -127.93 157.54 21.7 4AL7
ASG VAL A 184 152 E Strand -127.76 147.43 2.2 4AL7
ASG PRO A 185 153 E Strand -57.89 140.36 4.8 4AL7
ASG TRP A 186 154 C Coil -110.21 120.12 48.1 4AL7
ASG PHE A 187 155 C Coil -153.09 360.00 73.5 4AL7