Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/4ofa.std.txt Дата изменения: Wed Apr 22 20:22:31 2015 Дата индексирования: Mon Apr 11 05:10:47 2016 Кодировка:

REM -------------------------------------------------------------------- 4OFA
REM 4OFA
REM STRIDE: Knowledge-based secondary structure assignment 4OFA
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4OFA
REM 4OFA
REM Residue accessible surface area calculation 4OFA
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4OFA
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4OFA
REM 4OFA
REM ------------------------ General information ----------------------- 4OFA
REM 4OFA
HDR HYDROLASE/DNA 14-JAN-14 4OFA 4OFA
CMP MOL_ID: 1; 4OFA
CMP MOLECULE: METHYL-CPG-BINDING DOMAIN PROTEIN 4; 4OFA
CMP CHAIN: A; 4OFA
CMP FRAGMENT: CATALYTIC DOMAIN OF MBD4; 4OFA
CMP SYNONYM: METHYL-CPG-BINDING ENDONUCLEASE 1, METHYL-CPG-BINDI 4OFA
CMP PROTEIN MBD4, MISMATCH-SPECIFIC DNA N-GLYCOSYLASE; 4OFA
CMP EC: 3.2.2.-; 4OFA
CMP ENGINEERED: YES; 4OFA
CMP MUTATION: YES; 4OFA
CMP MOL_ID: 2; 4OFA
CMP MOLECULE: 12-MER DNA(T); 4OFA
CMP CHAIN: C; 4OFA
CMP ENGINEERED: YES; 4OFA
CMP MOL_ID: 3; 4OFA
CMP MOLECULE: 12-MER DNA(G); 4OFA
CMP CHAIN: D; 4OFA
CMP ENGINEERED: YES 4OFA
SRC MOL_ID: 1; 4OFA
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 4OFA
SRC ORGANISM_COMMON: HUMAN; 4OFA
SRC ORGANISM_TAXID: 9606; 4OFA
SRC GENE: MBD4, MED1; 4OFA
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4OFA
SRC EXPRESSION_SYSTEM_TAXID: 511693; 4OFA
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 4OFA
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 4OFA
SRC EXPRESSION_SYSTEM_PLASMID: PET28A; 4OFA
SRC MOL_ID: 2; 4OFA
SRC SYNTHETIC: YES; 4OFA
SRC OTHER_DETAILS: NATURE SUBSTRATE; 4OFA
SRC MOL_ID: 3; 4OFA
SRC SYNTHETIC: YES; 4OFA
SRC OTHER_DETAILS: NATURE SUBSTRATE 4OFA
AUT H.OUZON-SHUBEITA,Y.-L.LIN,S.LEE 4OFA
REM 4OFA
REM -------------------- Secondary structure summary ------------------- 4OFA
REM 4OFA
CHN /data/npidb/pdb/pdb_new/all/pdb4ofa.pdb A 4OFA
REM 4OFA
REM . . . . . 4OFA
SEQ 1 WTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPS 50 4OFA
STR TTTT GGGGTTTTHHHHHHHHHHHTTT HHHHHHHHHHHHHH 4OFA
REM 4OFA
REM . . . . . 4OFA
SEQ 51 AEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGI 100 4OFA
STR HHHHHH HHHHHHHHGGGTTHHHHHHHHHHHHHHHHH TTTGGGTTTT 4OFA
REM 4OFA
REM . . . . 4OFA
SEQ 101 GKYGNDSYRIFCVNEWKQVHPENHKLNKYHDWLWENHEKLSL 142 4OFA
STR HHHHHHHHHHH GGG HHHHHHHHHHHH GGG 4OFA
REM 4OFA
REM 4OFA
REM 4OFA
LOC AlphaHelix PRO 456 A LEU 466 A 4OFA
LOC AlphaHelix GLY 471 A LYS 484 A 4OFA
LOC AlphaHelix ALA 488 A THR 493 A 4OFA
LOC AlphaHelix TRP 496 A LEU 503 A 4OFA
LOC AlphaHelix TYR 509 A THR 525 A 4OFA
LOC AlphaHelix LYS 539 A CYS 549 A 4OFA
LOC AlphaHelix HIS 561 A GLU 572 A 4OFA
LOC 310Helix VAL 448 A THR 451 A 4OFA
LOC 310Helix LYS 504 A LEU 506 A 4OFA
LOC 310Helix PRO 531 A GLU 533 A 4OFA
LOC 310Helix TRP 553 A GLN 555 A 4OFA
LOC 310Helix GLU 575 A LEU 577 A 4OFA
LOC TurnI SER 443 A ASN 446 A 4OFA
LOC TurnI LEU 452 A ASP 455 A 4OFA
LOC TurnVIII PHE 453 A PRO 456 A 4OFA
LOC TurnIV LEU 466 A THR 469 A 4OFA
LOC TurnIV LEU 506 A TYR 509 A 4OFA
LOC TurnVIII TRP 528 A PRO 531 A 4OFA
LOC TurnII LEU 534 A ILE 537 A 4OFA
REM 4OFA
REM --------------- Detailed secondary structure assignment------------- 4OFA
REM 4OFA
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4OFA
ASG TRP A 438 1 C Coil 360.00 120.45 93.8 4OFA
ASG THR A 439 2 C Coil -123.66 110.66 94.0 4OFA
ASG PRO A 440 3 C Coil -64.73 135.29 2.5 4OFA
ASG PRO A 441 4 C Coil -71.79 151.33 21.4 4OFA
ASG ARG A 442 5 C Coil -70.56 141.06 138.7 4OFA
ASG SER A 443 6 T Turn -119.10 166.48 10.2 4OFA
ASG PRO A 444 7 T Turn -71.26 -1.28 86.6 4OFA
ASG PHE A 445 8 T Turn -103.81 -6.50 47.3 4OFA
ASG ASN A 446 9 T Turn 51.17 54.60 114.9 4OFA
ASG LEU A 447 10 C Coil -72.35 135.32 3.1 4OFA
ASG VAL A 448 11 G 310Helix -66.12 -20.73 16.0 4OFA
ASG GLN A 449 12 G 310Helix -58.83 -31.49 7.2 4OFA
ASG GLU A 450 13 G 310Helix -58.39 -25.97 2.9 4OFA
ASG THR A 451 14 G 310Helix -103.63 -11.00 63.6 4OFA
ASG LEU A 452 15 T Turn -105.21 -2.30 14.0 4OFA
ASG PHE A 453 16 T Turn -65.42 -19.20 23.0 4OFA
ASG HIS A 454 17 T Turn -72.28 -21.47 152.1 4OFA
ASG ASP A 455 18 T Turn -125.32 97.09 53.8 4OFA
ASG PRO A 456 19 H AlphaHelix -58.64 -29.95 33.7 4OFA
ASG TRP A 457 20 H AlphaHelix -65.70 -46.13 3.8 4OFA
ASG LYS A 458 21 H AlphaHelix -63.44 -39.11 64.7 4OFA
ASG LEU A 459 22 H AlphaHelix -63.79 -41.28 0.2 4OFA
ASG LEU A 460 23 H AlphaHelix -68.58 -39.83 0.0 4OFA
ASG ILE A 461 24 H AlphaHelix -59.51 -42.14 0.0 4OFA
ASG ALA A 462 25 H AlphaHelix -59.34 -42.14 1.8 4OFA
ASG THR A 463 26 H AlphaHelix -59.34 -38.99 2.6 4OFA
ASG ILE A 464 27 H AlphaHelix -62.74 -45.30 1.2 4OFA
ASG PHE A 465 28 H AlphaHelix -57.19 -28.79 3.2 4OFA
ASG LEU A 466 29 H AlphaHelix -89.79 -0.08 34.2 4OFA
ASG ASN A 467 30 T Turn -62.22 108.51 63.4 4OFA
ASG ARG A 468 31 T Turn 49.50 41.53 231.3 4OFA
ASG THR A 469 32 T Turn -146.68 136.51 23.8 4OFA
ASG SER A 470 33 C Coil -70.40 147.46 66.5 4OFA
ASG GLY A 471 34 H AlphaHelix -64.28 -31.85 26.4 4OFA
ASG LYS A 472 35 H AlphaHelix -58.65 -32.14 181.2 4OFA
ASG MET A 473 36 H AlphaHelix -92.27 -44.25 95.2 4OFA
ASG ALA A 474 37 H AlphaHelix -70.61 -41.35 0.4 4OFA
ASG ILE A 475 38 H AlphaHelix -65.99 -41.01 44.3 4OFA
ASG PRO A 476 39 H AlphaHelix -60.97 -35.49 70.9 4OFA
ASG VAL A 477 40 H AlphaHelix -72.16 -31.89 8.8 4OFA
ASG LEU A 478 41 H AlphaHelix -54.19 -43.77 1.4 4OFA
ASG TRP A 479 42 H AlphaHelix -66.23 -36.62 104.3 4OFA
ASG LYS A 480 43 H AlphaHelix -65.10 -43.93 94.9 4OFA
ASG PHE A 481 44 H AlphaHelix -55.17 -49.31 0.2 4OFA
ASG LEU A 482 45 H AlphaHelix -72.06 -21.20 16.1 4OFA
ASG GLU A 483 46 H AlphaHelix -70.18 -38.09 154.4 4OFA
ASG LYS A 484 47 H AlphaHelix -80.28 -36.76 133.1 4OFA
ASG TYR A 485 48 C Coil -125.83 78.69 17.6 4OFA
ASG PRO A 486 49 C Coil -71.68 -10.90 67.4 4OFA
ASG SER A 487 50 C Coil -153.34 165.10 31.5 4OFA
ASG ALA A 488 51 H AlphaHelix -58.03 -34.14 2.5 4OFA
ASG GLU A 489 52 H AlphaHelix -54.95 -41.72 115.0 4OFA
ASG VAL A 490 53 H AlphaHelix -80.16 -41.30 51.7 4OFA
ASG ALA A 491 54 H AlphaHelix -65.11 -38.42 0.8 4OFA
ASG ARG A 492 55 H AlphaHelix -59.86 -28.19 109.0 4OFA
ASG THR A 493 56 H AlphaHelix -97.54 2.79 107.4 4OFA
ASG ALA A 494 57 C Coil -78.04 155.73 21.2 4OFA
ASG ASP A 495 58 C Coil -86.10 123.51 58.4 4OFA
ASG TRP A 496 59 H AlphaHelix -60.32 -26.63 78.9 4OFA
ASG ARG A 497 60 H AlphaHelix -67.58 -32.58 143.1 4OFA
ASG ASP A 498 61 H AlphaHelix -70.63 -41.79 90.7 4OFA
ASG VAL A 499 62 H AlphaHelix -63.72 -40.80 1.4 4OFA
ASG SER A 500 63 H AlphaHelix -55.50 -42.73 1.0 4OFA
ASG GLU A 501 64 H AlphaHelix -57.03 -36.42 128.0 4OFA
ASG LEU A 502 65 H AlphaHelix -73.98 -37.85 36.5 4OFA
ASG LEU A 503 66 H AlphaHelix -77.45 -11.33 1.6 4OFA
ASG LYS A 504 67 G 310Helix -42.03 -50.72 77.3 4OFA
ASG PRO A 505 68 G 310Helix -70.93 -9.38 88.8 4OFA
ASG LEU A 506 69 G 310Helix -87.44 -12.05 14.9 4OFA
ASG GLY A 507 70 T Turn 72.43 176.64 25.7 4OFA
ASG LEU A 508 71 T Turn 47.50 40.37 81.1 4OFA
ASG TYR A 509 72 H AlphaHelix -82.52 -39.47 93.9 4OFA
ASG ASP A 510 73 H AlphaHelix -76.17 -42.61 68.4 4OFA
ASG LEU A 511 74 H AlphaHelix -54.46 -54.40 110.5 4OFA
ASG ARG A 512 75 H AlphaHelix -73.44 -30.94 5.0 4OFA
ASG ALA A 513 76 H AlphaHelix -60.17 -47.54 0.0 4OFA
ASG LYS A 514 77 H AlphaHelix -62.52 -43.78 106.9 4OFA
ASG THR A 515 78 H AlphaHelix -55.33 -47.43 17.2 4OFA
ASG ILE A 516 79 H AlphaHelix -61.37 -43.40 0.6 4OFA
ASG VAL A 517 80 H AlphaHelix -63.76 -51.26 27.1 4OFA
ASG LYS A 518 81 H AlphaHelix -65.04 -44.75 103.0 4OFA
ASG PHE A 519 82 H AlphaHelix -55.10 -47.57 0.0 4OFA
ASG SER A 520 83 H AlphaHelix -64.16 -37.94 0.0 4OFA
ASG ASP A 521 84 H AlphaHelix -60.94 -50.75 53.9 4OFA
ASG GLU A 522 85 H AlphaHelix -64.59 -39.63 30.1 4OFA
ASG TYR A 523 86 H AlphaHelix -48.72 -42.92 45.0 4OFA
ASG LEU A 524 87 H AlphaHelix -87.59 -30.19 64.3 4OFA
ASG THR A 525 88 H AlphaHelix -115.78 -12.98 82.5 4OFA
ASG LYS A 526 89 C Coil -100.09 145.23 93.8 4OFA
ASG GLN A 527 90 C Coil -75.05 126.99 177.5 4OFA
ASG TRP A 528 91 T Turn -149.06 148.69 58.1 4OFA
ASG LYS A 529 92 T Turn -103.11 -42.69 140.1 4OFA
ASG TYR A 530 93 T Turn -122.10 148.44 47.1 4OFA
ASG PRO A 531 94 G 310Helix -74.33 -10.21 0.0 4OFA
ASG ILE A 532 95 G 310Helix -57.72 -23.12 80.1 4OFA
ASG GLU A 533 96 G 310Helix -69.41 -12.42 82.7 4OFA
ASG LEU A 534 97 T Turn -98.55 146.38 4.3 4OFA
ASG HIS A 535 98 T Turn -58.22 123.18 78.2 4OFA
ASG GLY A 536 99 T Turn 102.92 -14.71 31.8 4OFA
ASG ILE A 537 100 T Turn -110.95 120.34 10.1 4OFA
ASG GLY A 538 101 C Coil -110.45 -159.01 37.4 4OFA
ASG LYS A 539 102 H AlphaHelix -57.87 -39.17 78.3 4OFA
ASG TYR A 540 103 H AlphaHelix -65.38 -50.26 47.3 4OFA
ASG GLY A 541 104 H AlphaHelix -61.90 -38.82 2.5 4OFA
ASG ASN A 542 105 H AlphaHelix -67.51 -44.34 14.2 4OFA
ASG ASP A 543 106 H AlphaHelix -62.60 -38.77 6.2 4OFA
ASG SER A 544 107 H AlphaHelix -57.33 -49.76 0.0 4OFA
ASG TYR A 545 108 H AlphaHelix -57.74 -45.06 28.3 4OFA
ASG ARG A 546 109 H AlphaHelix -71.94 -19.91 42.7 4OFA
ASG ILE A 547 110 H AlphaHelix -88.02 -39.12 0.0 4OFA
ASG PHE A 548 111 H AlphaHelix -102.51 -38.03 0.3 4OFA
ASG CYS A 549 112 H AlphaHelix -93.23 -25.02 28.5 4OFA
ASG VAL A 550 113 C Coil -133.32 165.12 38.1 4OFA
ASG ASN A 551 114 C Coil -91.54 64.86 98.5 4OFA
ASG GLU A 552 115 C Coil -119.16 11.06 30.9 4OFA
ASG TRP A 553 116 G 310Helix -54.38 -33.03 3.4 4OFA
ASG LYS A 554 117 G 310Helix -67.28 -20.67 106.0 4OFA
ASG GLN A 555 118 G 310Helix -93.61 -12.10 113.8 4OFA
ASG VAL A 556 119 C Coil -87.27 138.08 0.2 4OFA
ASG HIS A 557 120 C Coil -125.22 81.45 140.1 4OFA
ASG PRO A 558 121 C Coil -68.45 157.80 10.6 4OFA
ASG GLU A 559 122 C Coil -125.87 18.40 162.3 4OFA
ASG ASN A 560 123 C Coil -108.54 127.69 53.0 4OFA
ASG HIS A 561 124 H AlphaHelix -55.14 -49.56 147.0 4OFA
ASG LYS A 562 125 H AlphaHelix -61.23 -43.96 98.8 4OFA
ASG LEU A 563 126 H AlphaHelix -62.89 -36.09 0.4 4OFA
ASG ASN A 564 127 H AlphaHelix -66.78 -37.45 46.1 4OFA
ASG LYS A 565 128 H AlphaHelix -60.31 -45.93 85.5 4OFA
ASG TYR A 566 129 H AlphaHelix -62.46 -48.45 0.0 4OFA
ASG HIS A 567 130 H AlphaHelix -67.76 -41.00 10.6 4OFA
ASG ASP A 568 131 H AlphaHelix -58.43 -42.68 85.4 4OFA
ASG TRP A 569 132 H AlphaHelix -67.85 -37.03 39.7 4OFA
ASG LEU A 570 133 H AlphaHelix -58.73 -48.46 0.0 4OFA
ASG TRP A 571 134 H AlphaHelix -59.34 -37.09 110.2 4OFA
ASG GLU A 572 135 H AlphaHelix -75.92 -20.21 132.1 4OFA
ASG ASN A 573 136 C Coil -124.46 -1.23 33.7 4OFA
ASG HIS A 574 137 C Coil -67.54 -28.64 25.3 4OFA
ASG GLU A 575 138 G 310Helix -61.77 -53.42 163.1 4OFA
ASG LYS A 576 139 G 310Helix -57.91 -31.23 143.1 4OFA
ASG LEU A 577 140 G 310Helix -88.92 -6.18 67.9 4OFA
ASG SER A 578 141 C Coil 68.78 40.58 109.9 4OFA
ASG LEU A 579 142 C Coil -119.61 360.00 77.6 4OFA