Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/2vy2.std.txt Дата изменения: Fri Oct 5 14:55:39 2012 Дата индексирования: Sun Feb 3 22:24:27 2013 Кодировка:

REM -------------------------------------------------------------------- 2VY2
REM 2VY2
REM STRIDE: Knowledge-based secondary structure assignment 2VY2
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2VY2
REM 2VY2
REM Residue accessible surface area calculation 2VY2
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2VY2
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2VY2
REM 2VY2
REM ------------------------ General information ----------------------- 2VY2
REM 2VY2
HDR TRANSCRIPTION 16-JUL-08 2VY2 2VY2
CMP MOL_ID: 1; 2VY2
CMP MOLECULE: PROTEIN LEAFY; 2VY2
CMP CHAIN: A; 2VY2
CMP FRAGMENT: DNA BINDING DOMAIN, RESIDUES 231-424; 2VY2
CMP SYNONYM: LEAFY; 2VY2
CMP ENGINEERED: YES; 2VY2
CMP MOL_ID: 2; 2VY2
CMP MOLECULE: 5'-D(*AP*TP*TP*TP*AP*AP*TP*CP*CP*AP 2VY2
CMP *AP*TP*GP*GP*TP*TP*AP*CP*AP*A)-3'; 2VY2
CMP CHAIN: W; 2VY2
CMP SYNONYM: DNA AG-I SITE 2VY2
SRC MOL_ID: 1; 2VY2
SRC ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; 2VY2
SRC ORGANISM_COMMON: MOUSE-EAR CRESS; 2VY2
SRC ORGANISM_TAXID: 3702; 2VY2
SRC ORGAN: FLOWER; 2VY2
SRC TISSUE: FLOWER MERISTEM; 2VY2
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2VY2
SRC EXPRESSION_SYSTEM_TAXID: 562; 2VY2
SRC EXPRESSION_SYSTEM_STRAIN: ROSETTABLUE(DE3)PLYS; 2VY2
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 2VY2
SRC EXPRESSION_SYSTEM_PLASMID: PETM-11; 2VY2
SRC OTHER_DETAILS: NONE; 2VY2
SRC MOL_ID: 2; 2VY2
SRC SYNTHETIC: YES; 2VY2
SRC ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; 2VY2
SRC ORGANISM_COMMON: MOUSE-EAR CRESS; 2VY2
SRC ORGANISM_TAXID: 3702 2VY2
AUT C.HAMES,D.PTCHELKINE,C.GRIMM,E.THEVENON,E.MOYROUD,F.GERARD, 2VY2
AUT J.L.MARTIEL,R.BENLLOCH,F.PARCY,C.W.MULLER 2VY2
REM 2VY2
REM -------------------- Secondary structure summary ------------------- 2VY2
REM 2VY2
CHN /data/npidb/pdb/pdb_new/all/pdb2vy2.pdb A 2VY2
REM 2VY2
REM . . . . . 2VY2
SEQ 1 REHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLLQVQTIAKDRGEKCP 50 2VY2
STR B TTTT TTTTB HHHHHHHHHHHHHHHHHHHHHHHHH 2VY2
REM 2VY2
REM . . . . . 2VY2
SEQ 51 TKVTNQVFRYAKKSGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKE 100 2VY2
STR HHHHHHHHHH TTTT HHHHHHHHHHHHHHHH HHHHHHHHHHHHH 2VY2
REM 2VY2
REM . . . . . 2VY2
SEQ 101 RGENVGSWRQACYKPLVNIACRHGWDIDAVFNAHPRLSIWYVPTKLRQLC 150 2VY2
STR H HHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTTTTTT HHHHHHH 2VY2
REM 2VY2
REM . 2VY2
SEQ 151 HLERNNAVAAAAA 163 2VY2
STR HHHHHHHHHHH 2VY2
REM 2VY2
REM 2VY2
REM 2VY2
LOC AlphaHelix LEU 257 A ARG 281 A 2VY2
LOC AlphaHelix ASN 291 A SER 300 A 2VY2
LOC AlphaHelix LYS 307 A LEU 322 A 2VY2
LOC AlphaHelix GLU 324 A ARG 337 A 2VY2
LOC AlphaHelix VAL 341 A ARG 358 A 2VY2
LOC AlphaHelix ILE 363 A ALA 369 A 2VY2
LOC AlphaHelix THR 380 A ALA 397 A 2VY2
LOC TurnII GLU 245 A GLU 248 A 2VY2
LOC TurnIV ARG 251 A LYS 254 A 2VY2
LOC TurnI ALA 302 A ILE 305 A 2VY2
LOC TurnIV ARG 358 A TRP 361 A 2VY2
LOC TurnI' HIS 359 A ASP 362 A 2VY2
LOC TurnI HIS 370 A LEU 373 A 2VY2
LOC TurnI PRO 371 A SER 374 A 2VY2
LOC TurnI ARG 372 A ILE 375 A 2VY2
LOC TurnI LEU 373 A TRP 376 A 2VY2
REM 2VY2
REM --------------- Detailed secondary structure assignment------------- 2VY2
REM 2VY2
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2VY2
ASG ARG A 237 1 C Coil 360.00 128.77 277.0 2VY2
ASG GLU A 238 2 C Coil -66.07 153.01 76.7 2VY2
ASG HIS A 239 3 C Coil -59.57 144.87 87.9 2VY2
ASG PRO A 240 4 C Coil -75.20 153.70 55.7 2VY2
ASG PHE A 241 5 B Bridge -74.47 155.86 17.6 2VY2
ASG ILE A 242 6 C Coil -135.50 158.00 48.7 2VY2
ASG VAL A 243 7 C Coil -70.85 123.88 14.9 2VY2
ASG THR A 244 8 C Coil -128.72 162.93 0.2 2VY2
ASG GLU A 245 9 T Turn -91.75 162.63 77.4 2VY2
ASG PRO A 246 10 T Turn -53.32 131.12 33.8 2VY2
ASG GLY A 247 11 T Turn 84.30 -14.58 66.3 2VY2
ASG GLU A 248 12 T Turn -69.21 135.50 51.6 2VY2
ASG VAL A 249 13 C Coil -92.88 128.17 125.2 2VY2
ASG ALA A 250 14 C Coil -75.15 136.77 17.5 2VY2
ASG ARG A 251 15 T Turn -90.54 141.91 221.5 2VY2
ASG GLY A 252 16 T Turn 82.53 -160.91 65.4 2VY2
ASG LYS A 253 17 T Turn -79.44 62.51 152.0 2VY2
ASG LYS A 254 18 T Turn -144.83 154.56 92.4 2VY2
ASG ASN A 255 19 B Bridge -116.50 151.69 33.1 2VY2
ASG GLY A 256 20 C Coil -101.38 179.11 7.7 2VY2
ASG LEU A 257 21 H AlphaHelix -77.16 -29.49 0.0 2VY2
ASG ASP A 258 22 H AlphaHelix -64.03 -34.87 53.9 2VY2
ASG TYR A 259 23 H AlphaHelix -64.49 -43.29 74.7 2VY2
ASG LEU A 260 24 H AlphaHelix -54.03 -52.68 0.2 2VY2
ASG PHE A 261 25 H AlphaHelix -61.36 -39.03 5.6 2VY2
ASG HIS A 262 26 H AlphaHelix -57.15 -33.65 97.0 2VY2
ASG LEU A 263 27 H AlphaHelix -61.59 -34.53 0.8 2VY2
ASG TYR A 264 28 H AlphaHelix -67.49 -44.47 0.0 2VY2
ASG GLU A 265 29 H AlphaHelix -56.01 -39.83 49.0 2VY2
ASG GLN A 266 30 H AlphaHelix -65.91 -39.32 23.2 2VY2
ASG CYS A 267 31 H AlphaHelix -65.17 -38.71 0.8 2VY2
ASG ARG A 268 32 H AlphaHelix -56.67 -51.11 82.0 2VY2
ASG GLU A 269 33 H AlphaHelix -54.78 -45.96 116.5 2VY2
ASG PHE A 270 34 H AlphaHelix -58.60 -38.80 25.7 2VY2
ASG LEU A 271 35 H AlphaHelix -61.39 -45.78 2.4 2VY2
ASG LEU A 272 36 H AlphaHelix -54.01 -39.55 72.0 2VY2
ASG GLN A 273 37 H AlphaHelix -70.71 -33.54 86.3 2VY2
ASG VAL A 274 38 H AlphaHelix -72.87 -34.90 10.2 2VY2
ASG GLN A 275 39 H AlphaHelix -67.23 -41.42 36.9 2VY2
ASG THR A 276 40 H AlphaHelix -56.42 -50.42 90.0 2VY2
ASG ILE A 277 41 H AlphaHelix -65.26 -46.35 74.0 2VY2
ASG ALA A 278 42 H AlphaHelix -56.20 -44.34 2.4 2VY2
ASG LYS A 279 43 H AlphaHelix -66.78 -45.36 144.4 2VY2
ASG ASP A 280 44 H AlphaHelix -59.18 -33.44 144.0 2VY2
ASG ARG A 281 45 H AlphaHelix -87.89 3.13 163.4 2VY2
ASG GLY A 282 46 C Coil 52.25 35.76 71.4 2VY2
ASG GLU A 283 47 C Coil -97.78 165.49 102.9 2VY2
ASG LYS A 284 48 C Coil -65.61 134.07 203.9 2VY2
ASG CYS A 285 49 C Coil -98.91 116.47 49.6 2VY2
ASG PRO A 286 50 C Coil -66.21 147.11 18.1 2VY2
ASG THR A 287 51 C Coil -109.19 3.52 100.2 2VY2
ASG LYS A 288 52 C Coil -132.33 163.30 44.8 2VY2
ASG VAL A 289 53 C Coil -70.70 110.13 0.0 2VY2
ASG THR A 290 54 C Coil -111.87 178.25 29.9 2VY2
ASG ASN A 291 55 H AlphaHelix -49.60 -35.06 92.9 2VY2
ASG GLN A 292 56 H AlphaHelix -58.33 -46.88 75.5 2VY2
ASG VAL A 293 57 H AlphaHelix -66.01 -39.83 0.8 2VY2
ASG PHE A 294 58 H AlphaHelix -61.55 -40.38 17.2 2VY2
ASG ARG A 295 59 H AlphaHelix -62.64 -42.50 168.5 2VY2
ASG TYR A 296 60 H AlphaHelix -60.34 -46.48 62.0 2VY2
ASG ALA A 297 61 H AlphaHelix -54.71 -46.11 0.8 2VY2
ASG LYS A 298 62 H AlphaHelix -61.32 -51.07 87.3 2VY2
ASG LYS A 299 63 H AlphaHelix -56.03 -35.65 168.1 2VY2
ASG SER A 300 64 H AlphaHelix -79.05 9.27 57.7 2VY2
ASG GLY A 301 65 C Coil 84.68 2.49 52.3 2VY2
ASG ALA A 302 66 T Turn -82.83 70.67 4.2 2VY2
ASG SER A 303 67 T Turn -70.36 -25.89 84.5 2VY2
ASG TYR A 304 68 T Turn -74.09 1.95 62.3 2VY2
ASG ILE A 305 69 T Turn -101.07 135.73 1.4 2VY2
ASG ASN A 306 70 C Coil -149.40 152.12 62.5 2VY2
ASG LYS A 307 71 H AlphaHelix -60.36 -45.61 80.7 2VY2
ASG PRO A 308 72 H AlphaHelix -58.15 -42.95 91.7 2VY2
ASG LYS A 309 73 H AlphaHelix -68.11 -40.88 39.4 2VY2
ASG MET A 310 74 H AlphaHelix -65.97 -44.05 0.2 2VY2
ASG ARG A 311 75 H AlphaHelix -60.98 -38.90 71.5 2VY2
ASG HIS A 312 76 H AlphaHelix -58.02 -44.87 80.3 2VY2
ASG TYR A 313 77 H AlphaHelix -100.78 11.26 30.1 2VY2
ASG VAL A 314 78 H AlphaHelix -59.40 -41.64 2.6 2VY2
ASG HIS A 315 79 H AlphaHelix -63.36 -26.75 1.4 2VY2
ASG CYS A 316 80 H AlphaHelix -68.39 -42.60 0.3 2VY2
ASG TYR A 317 81 H AlphaHelix -60.81 -41.49 0.0 2VY2
ASG ALA A 318 82 H AlphaHelix -52.76 -47.50 0.0 2VY2
ASG LEU A 319 83 H AlphaHelix -64.60 -43.65 2.2 2VY2
ASG HIS A 320 84 H AlphaHelix -56.31 -40.10 22.5 2VY2
ASG CYS A 321 85 H AlphaHelix -72.36 -49.23 15.1 2VY2
ASG LEU A 322 86 H AlphaHelix -73.76 -31.34 48.3 2VY2
ASG ASP A 323 87 C Coil -153.10 81.57 63.7 2VY2
ASG GLU A 324 88 H AlphaHelix -60.50 -43.89 98.8 2VY2
ASG GLU A 325 89 H AlphaHelix -51.84 -48.84 125.5 2VY2
ASG ALA A 326 90 H AlphaHelix -69.09 -33.19 33.9 2VY2
ASG SER A 327 91 H AlphaHelix -61.93 -48.56 2.2 2VY2
ASG ASN A 328 92 H AlphaHelix -56.22 -48.58 16.6 2VY2
ASG ALA A 329 93 H AlphaHelix -60.71 -41.47 53.2 2VY2
ASG LEU A 330 94 H AlphaHelix -67.55 -35.67 37.0 2VY2
ASG ARG A 331 95 H AlphaHelix -63.18 -46.95 0.2 2VY2
ASG ARG A 332 96 H AlphaHelix -60.76 -38.65 112.5 2VY2
ASG ALA A 333 97 H AlphaHelix -70.88 -41.78 40.9 2VY2
ASG PHE A 334 98 H AlphaHelix -70.15 -34.52 15.0 2VY2
ASG LYS A 335 99 H AlphaHelix -61.80 -54.12 76.7 2VY2
ASG GLU A 336 100 H AlphaHelix -57.10 -34.45 159.4 2VY2
ASG ARG A 337 101 H AlphaHelix -80.13 -1.98 137.1 2VY2
ASG GLY A 338 102 C Coil 68.51 25.05 66.3 2VY2
ASG GLU A 339 103 C Coil -76.63 154.60 63.2 2VY2
ASG ASN A 340 104 C Coil -84.09 175.63 111.5 2VY2
ASG VAL A 341 105 H AlphaHelix -67.48 -42.70 14.8 2VY2
ASG GLY A 342 106 H AlphaHelix -52.73 -39.67 43.4 2VY2
ASG SER A 343 107 H AlphaHelix -71.80 -49.19 36.9 2VY2
ASG TRP A 344 108 H AlphaHelix -55.42 -43.23 1.2 2VY2
ASG ARG A 345 109 H AlphaHelix -54.48 -46.44 35.5 2VY2
ASG GLN A 346 110 H AlphaHelix -59.77 -36.33 88.3 2VY2
ASG ALA A 347 111 H AlphaHelix -68.72 -17.84 27.1 2VY2
ASG CYS A 348 112 H AlphaHelix -71.32 -22.38 1.2 2VY2
ASG TYR A 349 113 H AlphaHelix -59.74 -53.41 12.8 2VY2
ASG LYS A 350 114 H AlphaHelix -51.04 -53.87 149.3 2VY2
ASG PRO A 351 115 H AlphaHelix -61.87 -29.63 37.4 2VY2
ASG LEU A 352 116 H AlphaHelix -64.91 -46.87 0.4 2VY2
ASG VAL A 353 117 H AlphaHelix -55.32 -38.06 12.0 2VY2
ASG ASN A 354 118 H AlphaHelix -68.38 -37.02 71.2 2VY2
ASG ILE A 355 119 H AlphaHelix -63.22 -44.05 12.6 2VY2
ASG ALA A 356 120 H AlphaHelix -55.79 -45.63 0.0 2VY2
ASG CYS A 357 121 H AlphaHelix -53.87 -36.85 57.3 2VY2
ASG ARG A 358 122 H AlphaHelix -80.63 6.28 169.6 2VY2
ASG HIS A 359 123 T Turn -136.34 43.95 114.7 2VY2
ASG GLY A 360 124 T Turn 68.88 25.15 62.5 2VY2
ASG TRP A 361 125 T Turn 59.28 19.37 52.6 2VY2
ASG ASP A 362 126 T Turn -103.93 88.65 78.9 2VY2
ASG ILE A 363 127 H AlphaHelix -76.26 -29.59 5.2 2VY2
ASG ASP A 364 128 H AlphaHelix -59.47 -39.89 58.3 2VY2
ASG ALA A 365 129 H AlphaHelix -71.17 -34.80 43.0 2VY2
ASG VAL A 366 130 H AlphaHelix -62.56 -48.46 10.8 2VY2
ASG PHE A 367 131 H AlphaHelix -56.94 -46.83 1.2 2VY2
ASG ASN A 368 132 H AlphaHelix -69.24 -23.65 87.9 2VY2
ASG ALA A 369 133 H AlphaHelix -78.33 -8.28 85.2 2VY2
ASG HIS A 370 134 T Turn -109.19 124.77 33.1 2VY2
ASG PRO A 371 135 T Turn -60.81 -44.38 100.6 2VY2
ASG ARG A 372 136 T Turn -62.01 -36.37 85.3 2VY2
ASG LEU A 373 137 T Turn -92.20 -21.16 0.0 2VY2
ASG SER A 374 138 T Turn -62.94 -18.32 31.5 2VY2
ASG ILE A 375 139 T Turn -89.15 1.17 17.2 2VY2
ASG TRP A 376 140 T Turn -105.71 131.76 2.3 2VY2
ASG TYR A 377 141 C Coil -62.25 137.48 118.5 2VY2
ASG VAL A 378 142 C Coil -63.09 124.23 13.0 2VY2
ASG PRO A 379 143 C Coil -65.04 140.08 25.5 2VY2
ASG THR A 380 144 H AlphaHelix -52.27 -52.05 91.0 2VY2
ASG LYS A 381 145 H AlphaHelix -52.11 -45.48 84.4 2VY2
ASG LEU A 382 146 H AlphaHelix -64.97 -40.27 0.0 2VY2
ASG ARG A 383 147 H AlphaHelix -62.37 -41.44 101.6 2VY2
ASG GLN A 384 148 H AlphaHelix -58.76 -49.22 122.2 2VY2
ASG LEU A 385 149 H AlphaHelix -57.39 -40.84 54.2 2VY2
ASG CYS A 386 150 H AlphaHelix -66.52 -33.33 3.1 2VY2
ASG HIS A 387 151 H AlphaHelix -74.75 -47.97 101.7 2VY2
ASG LEU A 388 152 H AlphaHelix -51.02 -50.76 98.3 2VY2
ASG GLU A 389 153 H AlphaHelix -60.85 -38.51 81.4 2VY2
ASG ARG A 390 154 H AlphaHelix -67.03 -37.02 90.2 2VY2
ASG ASN A 391 155 H AlphaHelix -71.04 -33.95 63.1 2VY2
ASG ASN A 392 156 H AlphaHelix -66.77 -38.20 84.6 2VY2
ASG ALA A 393 157 H AlphaHelix -72.24 -34.07 37.2 2VY2
ASG VAL A 394 158 H AlphaHelix -80.04 -30.64 76.9 2VY2
ASG ALA A 395 159 H AlphaHelix -63.87 -33.01 69.2 2VY2
ASG ALA A 396 160 H AlphaHelix -79.25 -29.36 66.5 2VY2
ASG ALA A 397 161 H AlphaHelix -77.33 1.87 86.4 2VY2
ASG ALA A 398 162 C Coil -84.77 57.82 84.3 2VY2
ASG ALA A 399 163 C Coil -173.53 360.00 132.7 2VY2