Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/2ese.std.txt Дата изменения: Fri Jan 21 02:58:47 2011 Дата индексирования: Fri Feb 11 21:16:53 2011 Кодировка:

REM -------------------------------------------------------------------- 2ESE
REM 2ESE
REM STRIDE: Knowledge-based secondary structure assignment 2ESE
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2ESE
REM 2ESE
REM Residue accessible surface area calculation 2ESE
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2ESE
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2ESE
REM 2ESE
REM ------------------------ General information ----------------------- 2ESE
REM 2ESE
HDR PROTEIN/RNA COMPLEX 26-OCT-05 2ESE 2ESE
CMP MOL_ID: 1; 2ESE
CMP MOLECULE: VTS1P; 2ESE
CMP CHAIN: A; 2ESE
CMP ENGINEERED: YES; 2ESE
CMP MOL_ID: 2; 2ESE
CMP MOLECULE: 5'- 2ESE
CMP R(*GP*GP*AP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP*UP 2ESE
CMP *UP*UP*CP*C)-3'; 2ESE
CMP CHAIN: B; 2ESE
CMP ENGINEERED: YES; 2ESE
CMP OTHER_DETAILS: SRE RNA 2ESE
SRC MOL_ID: 1; 2ESE
SRC ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; 2ESE
SRC ORGANISM_COMMON: BAKER'S YEAST; 2ESE
SRC ORGANISM_TAXID: 4932; 2ESE
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2ESE
SRC EXPRESSION_SYSTEM_TAXID: 562; 2ESE
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+RIL; 2ESE
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 2ESE
SRC EXPRESSION_SYSTEM_PLASMID: PET28; 2ESE
SRC MOL_ID: 2; 2ESE
SRC SYNTHETIC: YES; 2ESE
SRC OTHER_DETAILS: RNA WAS PREPARED BY IN VITRO TRANSCRIPTION 2ESE
AUT F.H.T.ALLAIN 2ESE
REM 2ESE
REM -------------------- Secondary structure summary ------------------- 2ESE
REM 2ESE
CHN /data/npidb/pdb/pdb_new/all/pdb2ese.pdb A 2ESE
REM 2ESE
REM . . . . . 2ESE
SEQ 1 MPKSLTDPKLLKNIPMWLKSLRLHKYSDALSGTPWIELIYLDDETLEKKG 50 2ESE
STR TTTTTTHHHHH HHHHHHH TTTTTTTTTTT HHHHH HHHHHHH 2ESE
REM 2ESE
REM . . . 2ESE
SEQ 51 VLALGARRKLLKAFGIVIDYKERDLIDRSAY 81 2ESE
STR HHHHHHHHHHHHHHHHHHHH TTTT 2ESE
REM 2ESE
REM 2ESE
REM 2ESE
LOC AlphaHelix PRO 450 A LYS 454 A 2ESE
LOC AlphaHelix ILE 456 A SER 462 A 2ESE
LOC AlphaHelix TRP 477 A ILE 481 A 2ESE
LOC AlphaHelix ASP 485 A LYS 491 A 2ESE
LOC AlphaHelix LEU 496 A ARG 515 A 2ESE
LOC TurnIV PRO 444 A LEU 447 A 2ESE
LOC TurnIV SER 446 A ASP 449 A 2ESE
LOC TurnI LEU 465 A TYR 468 A 2ESE
LOC TurnI HIS 466 A SER 469 A 2ESE
LOC TurnI TYR 468 A ALA 471 A 2ESE
LOC TurnI SER 469 A LEU 472 A 2ESE
LOC TurnI ASP 470 A SER 473 A 2ESE
LOC TurnIV LEU 472 A THR 475 A 2ESE
LOC TurnI ASP 519 A ALA 522 A 2ESE
REM 2ESE
REM --------------- Detailed secondary structure assignment------------- 2ESE
REM 2ESE
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2ESE
ASG MET A 443 1 C Coil 360.00 101.28 195.4 2ESE
ASG PRO A 444 2 T Turn -74.20 166.98 30.4 2ESE
ASG LYS A 445 3 T Turn -134.06 -10.96 200.5 2ESE
ASG SER A 446 4 T Turn -141.17 -80.33 68.8 2ESE
ASG LEU A 447 5 T Turn 63.40 -37.65 3.1 2ESE
ASG THR A 448 6 T Turn -68.63 27.26 33.5 2ESE
ASG ASP A 449 7 T Turn -108.03 126.78 53.0 2ESE
ASG PRO A 450 8 H AlphaHelix -70.44 -24.84 20.0 2ESE
ASG LYS A 451 9 H AlphaHelix -74.06 -41.80 130.1 2ESE
ASG LEU A 452 10 H AlphaHelix -68.14 -48.68 20.8 2ESE
ASG LEU A 453 11 H AlphaHelix -58.80 -43.12 1.0 2ESE
ASG LYS A 454 12 H AlphaHelix -68.11 -29.68 122.2 2ESE
ASG ASN A 455 13 C Coil -115.36 82.99 75.0 2ESE
ASG ILE A 456 14 H AlphaHelix -46.11 -42.71 14.7 2ESE
ASG PRO A 457 15 H AlphaHelix -51.56 -41.74 51.8 2ESE
ASG MET A 458 16 H AlphaHelix -84.12 -26.00 80.6 2ESE
ASG TRP A 459 17 H AlphaHelix -58.64 -46.70 2.4 2ESE
ASG LEU A 460 18 H AlphaHelix -74.27 -25.76 0.0 2ESE
ASG LYS A 461 19 H AlphaHelix -54.42 -47.82 124.7 2ESE
ASG SER A 462 20 H AlphaHelix -64.82 -2.70 58.5 2ESE
ASG LEU A 463 21 C Coil -119.86 2.04 0.8 2ESE
ASG ARG A 464 22 C Coil 57.99 16.39 206.0 2ESE
ASG LEU A 465 23 T Turn -104.33 7.10 15.1 2ESE
ASG HIS A 466 24 T Turn -60.08 6.15 60.6 2ESE
ASG LYS A 467 25 T Turn -86.23 -28.52 165.6 2ESE
ASG TYR A 468 26 T Turn -91.96 12.30 67.8 2ESE
ASG SER A 469 27 T Turn -57.79 -32.05 19.6 2ESE
ASG ASP A 470 28 T Turn -79.95 -25.95 142.4 2ESE
ASG ALA A 471 29 T Turn -74.79 -28.02 26.7 2ESE
ASG LEU A 472 30 T Turn -101.06 -13.08 0.0 2ESE
ASG SER A 473 31 T Turn -69.95 174.96 58.2 2ESE
ASG GLY A 474 32 T Turn 67.07 8.42 79.3 2ESE
ASG THR A 475 33 T Turn -139.29 121.05 30.0 2ESE
ASG PRO A 476 34 C Coil -71.94 160.76 75.6 2ESE
ASG TRP A 477 35 H AlphaHelix -61.20 -56.51 7.6 2ESE
ASG ILE A 478 36 H AlphaHelix -34.17 -26.83 43.1 2ESE
ASG GLU A 479 37 H AlphaHelix -113.05 -38.76 104.2 2ESE
ASG LEU A 480 38 H AlphaHelix -45.51 -60.14 1.0 2ESE
ASG ILE A 481 39 H AlphaHelix -41.13 -36.39 4.9 2ESE
ASG TYR A 482 40 C Coil -74.77 -6.13 90.7 2ESE
ASG LEU A 483 41 C Coil -50.12 155.34 25.1 2ESE
ASG ASP A 484 42 C Coil -113.27 166.68 108.5 2ESE
ASG ASP A 485 43 H AlphaHelix -55.41 -41.14 66.8 2ESE
ASG GLU A 486 44 H AlphaHelix -66.50 -40.85 139.9 2ESE
ASG THR A 487 45 H AlphaHelix -58.20 -44.98 50.9 2ESE
ASG LEU A 488 46 H AlphaHelix -59.49 -48.49 0.0 2ESE
ASG GLU A 489 47 H AlphaHelix -64.43 -27.95 75.7 2ESE
ASG LYS A 490 48 H AlphaHelix -78.63 -19.53 170.1 2ESE
ASG LYS A 491 49 H AlphaHelix -74.40 -31.68 53.7 2ESE
ASG GLY A 492 50 C Coil 122.27 14.57 25.6 2ESE
ASG VAL A 493 51 C Coil -102.39 63.87 0.0 2ESE
ASG LEU A 494 52 C Coil -72.17 -29.64 108.0 2ESE
ASG ALA A 495 53 C Coil -63.69 139.71 41.8 2ESE
ASG LEU A 496 54 H AlphaHelix -63.64 -44.14 134.7 2ESE
ASG GLY A 497 55 H AlphaHelix -63.05 -59.49 41.1 2ESE
ASG ALA A 498 56 H AlphaHelix -33.16 -69.46 14.6 2ESE
ASG ARG A 499 57 H AlphaHelix -56.01 -45.67 29.7 2ESE
ASG ARG A 500 58 H AlphaHelix -57.46 -38.96 166.5 2ESE
ASG LYS A 501 59 H AlphaHelix -75.83 -25.22 55.1 2ESE
ASG LEU A 502 60 H AlphaHelix -63.78 -48.98 0.0 2ESE
ASG LEU A 503 61 H AlphaHelix -57.42 -37.48 64.4 2ESE
ASG LYS A 504 62 H AlphaHelix -62.62 -60.11 128.0 2ESE
ASG ALA A 505 63 H AlphaHelix -48.54 -47.40 2.0 2ESE
ASG PHE A 506 64 H AlphaHelix -58.15 -47.05 2.4 2ESE
ASG GLY A 507 65 H AlphaHelix -64.54 -29.66 39.6 2ESE
ASG ILE A 508 66 H AlphaHelix -70.73 -70.69 73.1 2ESE
ASG VAL A 509 67 H AlphaHelix -42.08 -56.06 0.0 2ESE
ASG ILE A 510 68 H AlphaHelix -39.80 -44.88 43.9 2ESE
ASG ASP A 511 69 H AlphaHelix -58.38 -55.12 59.6 2ESE
ASG TYR A 512 70 H AlphaHelix -59.95 -28.58 92.8 2ESE
ASG LYS A 513 71 H AlphaHelix -67.08 -45.45 44.5 2ESE
ASG GLU A 514 72 H AlphaHelix -71.04 -12.08 145.5 2ESE
ASG ARG A 515 73 H AlphaHelix -102.66 -19.90 158.5 2ESE
ASG ASP A 516 74 C Coil 77.57 18.74 80.1 2ESE
ASG LEU A 517 75 C Coil -76.12 -10.02 112.9 2ESE
ASG ILE A 518 76 C Coil -79.68 152.86 4.9 2ESE
ASG ASP A 519 77 T Turn -79.45 147.51 86.9 2ESE
ASG ARG A 520 78 T Turn -63.04 -15.37 147.4 2ESE
ASG SER A 521 79 T Turn -76.70 -16.72 56.0 2ESE
ASG ALA A 522 80 T Turn -68.13 -34.90 0.3 2ESE
ASG TYR A 523 81 C Coil -68.71 360.00 132.6 2ESE