Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/2m8d.std.txt Дата изменения: Tue Jul 30 16:36:24 2013 Дата индексирования: Fri Feb 28 17:24:18 2014 Кодировка:

REM -------------------------------------------------------------------- 2M8D
REM 2M8D
REM STRIDE: Knowledge-based secondary structure assignment 2M8D
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2M8D
REM 2M8D
REM Residue accessible surface area calculation 2M8D
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2M8D
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2M8D
REM 2M8D
REM ------------------------ General information ----------------------- 2M8D
REM 2M8D
HDR RNA BINDING PROTEIN/RNA 17-MAY-13 2M8D 2M8D
CMP MOL_ID: 1; 2M8D
CMP MOLECULE: RNA (5'-R(*UP*GP*AP*AP*GP*GP*AP*C)-3'); 2M8D
CMP CHAIN: A; 2M8D
CMP ENGINEERED: YES; 2M8D
CMP MOL_ID: 2; 2M8D
CMP MOLECULE: SERINE/ARGININE-RICH SPLICING FACTOR 1; 2M8D
CMP CHAIN: B; 2M8D
CMP SYNONYM: ALTERNATIVE-SPLICING FACTOR 1, ASF-1, SPLICING FACT 2M8D
CMP ARGININE/SERINE-RICH 1, PRE-MRNA-SPLICING FACTOR SF2, P33 SU 2M8D
CMP ENGINEERED: YES 2M8D
SRC MOL_ID: 1; 2M8D
SRC SYNTHETIC: YES; 2M8D
SRC MOL_ID: 2; 2M8D
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 2M8D
SRC ORGANISM_COMMON: HUMAN; 2M8D
SRC ORGANISM_TAXID: 9606; 2M8D
SRC GENE: SRSF1, ASF, SF2, SF2P33, SFRS1, OK/SW-CL.3; 2M8D
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2M8D
SRC EXPRESSION_SYSTEM_TAXID: 562 2M8D
AUT A.CLERY,R.SINHA,O.ANCZUKOW,A.CORRIONERO,A.MOURSY,G.DAUBNER, 2M8D
AUT J.VALCARCEL,A.R.KRAINER,F.H.T.ALLAIN 2M8D
REM 2M8D
REM -------------------- Secondary structure summary ------------------- 2M8D
REM 2M8D
CHN /data/npidb/pdb/pdb_new/all/pdb2m8d.pdb B 2M8D
REM 2M8D
REM . . . . . 2M8D
SEQ 1 MAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 50 2M8D
STR TTTEEEEETTTTTT HHHHHHHHGGGTTEEEEEE TT 2M8D
REM 2M8D
REM . . . . 2M8D
SEQ 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 2M8D
STR TEEEEEETTHHHHHHHHTTTTTEEEEETTTEEEEEEEE 2M8D
REM 2M8D
REM 2M8D
REM 2M8D
LOC AlphaHelix TRP 134 B MET 141 B 2M8D
LOC AlphaHelix LYS 165 B VAL 172 B 2M8D
LOC 310Helix ARG 142 B ALA 144 B 2M8D
LOC Strand ARG 122 B SER 126 B 2M8D
LOC Strand VAL 147 B VAL 152 B 2M8D
LOC Strand THR 157 B PHE 162 B 2M8D
LOC Strand THR 178 B SER 182 B 2M8D
LOC Strand GLU 186 B LYS 193 B 2M8D
LOC TurnIV SER 119 B ARG 122 B 2M8D
LOC TurnIV VAL 125 B LEU 128 B 2M8D
LOC TurnI PRO 129 B GLY 132 B 2M8D
LOC TurnIV ARG 154 B THR 157 B 2M8D
LOC TurnVIII PHE 162 B LYS 165 B 2M8D
LOC TurnIV VAL 172 B LEU 175 B 2M8D
LOC TurnIV ARG 173 B ASP 176 B 2M8D
LOC TurnII LEU 175 B THR 178 B 2M8D
LOC TurnI SER 182 B GLY 185 B 2M8D
LOC GammaInv GLY 145 B VAL 147 B 2M8D
REM 2M8D
REM --------------- Detailed secondary structure assignment------------- 2M8D
REM 2M8D
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2M8D
ASG MET B 106 1 C Coil 360.00 112.09 140.9 2M8D
ASG ALA B 107 2 C Coil 34.52 56.09 86.0 2M8D
ASG PRO B 108 3 C Coil -70.46 167.28 117.7 2M8D
ASG ARG B 109 4 C Coil -142.33 -8.26 94.9 2M8D
ASG GLY B 110 5 C Coil 62.31 19.34 79.7 2M8D
ASG ARG B 111 6 C Coil -146.69 169.29 206.4 2M8D
ASG TYR B 112 7 C Coil -62.83 150.61 239.0 2M8D
ASG GLY B 113 8 C Coil 151.46 174.51 21.7 2M8D
ASG PRO B 114 9 C Coil -49.97 111.13 77.6 2M8D
ASG PRO B 115 10 C Coil -49.75 -58.06 68.9 2M8D
ASG SER B 116 11 C Coil -166.18 -30.71 28.7 2M8D
ASG ARG B 117 12 C Coil -132.02 -8.66 73.5 2M8D
ASG ARG B 118 13 C Coil 53.77 -175.64 112.2 2M8D
ASG SER B 119 14 T Turn -162.44 179.60 35.1 2M8D
ASG GLU B 120 15 T Turn -149.35 -31.21 172.2 2M8D
ASG ASN B 121 16 T Turn -140.49 78.74 13.3 2M8D
ASG ARG B 122 17 E Strand -87.29 158.00 98.5 2M8D
ASG VAL B 123 18 E Strand -146.65 142.17 0.0 2M8D
ASG VAL B 124 19 E Strand -75.91 159.48 18.2 2M8D
ASG VAL B 125 20 E Strand -133.07 102.90 0.6 2M8D
ASG SER B 126 21 E Strand -117.79 150.65 39.1 2M8D
ASG GLY B 127 22 T Turn 100.96 -2.71 44.8 2M8D
ASG LEU B 128 23 T Turn -53.42 145.18 9.9 2M8D
ASG PRO B 129 24 T Turn -74.36 162.45 10.9 2M8D
ASG PRO B 130 25 T Turn -68.33 -12.64 115.6 2M8D
ASG SER B 131 26 T Turn -72.75 -23.00 11.6 2M8D
ASG GLY B 132 27 T Turn -65.51 158.59 11.2 2M8D
ASG SER B 133 28 C Coil -158.12 168.66 25.7 2M8D
ASG TRP B 134 29 H AlphaHelix -64.49 -30.13 81.6 2M8D
ASG GLN B 135 30 H AlphaHelix -66.61 -37.07 89.8 2M8D
ASG ASP B 136 31 H AlphaHelix -84.67 -17.88 21.6 2M8D
ASG LEU B 137 32 H AlphaHelix -72.35 -32.17 2.4 2M8D
ASG LYS B 138 33 H AlphaHelix -77.73 -38.57 47.7 2M8D
ASG ASP B 139 34 H AlphaHelix -64.97 1.57 127.1 2M8D
ASG HIS B 140 35 H AlphaHelix -136.68 -40.37 46.1 2M8D
ASG MET B 141 36 H AlphaHelix -68.55 -11.60 0.2 2M8D
ASG ARG B 142 37 G 310Helix -47.39 -21.38 182.8 2M8D
ASG GLU B 143 38 G 310Helix -66.23 -42.74 144.3 2M8D
ASG ALA B 144 39 G 310Helix -68.45 -27.72 5.0 2M8D
ASG GLY B 145 40 T Turn 162.50 -167.54 16.9 2M8D
ASG ASP B 146 41 T Turn -87.22 77.90 87.8 2M8D
ASG VAL B 147 42 E Strand -62.96 141.71 0.0 2M8D
ASG CYS B 148 43 E Strand -128.06 -23.77 42.7 2M8D
ASG TYR B 149 44 E Strand -139.59 155.79 11.9 2M8D
ASG ALA B 150 45 E Strand -151.86 165.12 3.3 2M8D
ASG ASP B 151 46 E Strand -147.62 153.61 56.4 2M8D
ASG VAL B 152 47 E Strand -132.35 147.29 24.0 2M8D
ASG TYR B 153 48 C Coil -113.78 10.98 91.1 2M8D
ASG ARG B 154 49 T Turn 59.24 17.39 223.3 2M8D
ASG ASP B 155 50 T Turn -136.11 15.16 136.7 2M8D
ASG GLY B 156 51 T Turn 100.50 7.00 16.5 2M8D
ASG THR B 157 52 E Strand -140.69 159.19 46.4 2M8D
ASG GLY B 158 53 E Strand -175.78 -170.27 0.2 2M8D
ASG VAL B 159 54 E Strand -137.50 161.98 2.0 2M8D
ASG VAL B 160 55 E Strand -153.49 156.54 0.2 2M8D
ASG GLU B 161 56 E Strand -152.39 155.39 6.6 2M8D
ASG PHE B 162 57 E Strand -124.17 163.62 0.0 2M8D
ASG VAL B 163 58 T Turn -62.70 -8.37 65.5 2M8D
ASG ARG B 164 59 T Turn -147.80 133.80 161.4 2M8D
ASG LYS B 165 60 H AlphaHelix -63.57 -20.66 157.6 2M8D
ASG GLU B 166 61 H AlphaHelix -76.02 -29.37 132.8 2M8D
ASG ASP B 167 62 H AlphaHelix -74.80 -19.01 39.3 2M8D
ASG MET B 168 63 H AlphaHelix -77.97 -52.97 21.8 2M8D
ASG THR B 169 64 H AlphaHelix -63.46 -21.45 74.6 2M8D
ASG TYR B 170 65 H AlphaHelix -74.53 -31.72 90.8 2M8D
ASG ALA B 171 66 H AlphaHelix -74.73 -17.56 0.0 2M8D
ASG VAL B 172 67 H AlphaHelix -113.21 34.23 35.8 2M8D
ASG ARG B 173 68 T Turn -143.28 -17.50 173.1 2M8D
ASG LYS B 174 69 T Turn -123.54 -25.82 91.2 2M8D
ASG LEU B 175 70 T Turn -106.38 -2.64 17.8 2M8D
ASG ASP B 176 71 T Turn -80.22 145.90 49.8 2M8D
ASG ASN B 177 72 T Turn 61.95 29.67 85.3 2M8D
ASG THR B 178 73 E Strand -133.44 169.49 48.3 2M8D
ASG LYS B 179 74 E Strand -57.85 149.47 110.3 2M8D
ASG PHE B 180 75 E Strand -141.71 161.10 1.6 2M8D
ASG ARG B 181 76 E Strand -139.33 155.76 142.1 2M8D
ASG SER B 182 77 E Strand -141.77 162.56 3.6 2M8D
ASG HIS B 183 78 T Turn -59.75 -20.57 106.4 2M8D
ASG GLU B 184 79 T Turn -72.00 -13.15 120.0 2M8D
ASG GLY B 185 80 T Turn 101.35 20.51 52.5 2M8D
ASG GLU B 186 81 E Strand -140.18 171.48 97.9 2M8D
ASG THR B 187 82 E Strand -139.01 161.56 62.4 2M8D
ASG ALA B 188 83 E Strand -164.69 160.48 28.0 2M8D
ASG TYR B 189 84 E Strand -71.98 157.23 109.4 2M8D
ASG ILE B 190 85 E Strand -123.59 151.70 0.0 2M8D
ASG ARG B 191 86 E Strand -118.41 78.76 108.8 2M8D
ASG VAL B 192 87 E Strand -57.78 144.54 8.5 2M8D
ASG LYS B 193 88 E Strand -126.68 168.78 117.7 2M8D
ASG VAL B 194 89 C Coil -60.22 -29.55 89.4 2M8D
ASG ASP B 195 90 C Coil 143.59 163.92 75.2 2M8D
ASG GLY B 196 91 C Coil 176.28 360.00 104.5 2M8D