Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/1iv6.std.txt Дата изменения: Mon Jan 17 20:12:12 2011 Дата индексирования: Fri Feb 11 21:02:46 2011 Кодировка:

REM -------------------------------------------------------------------- 1IV6
REM 1IV6
REM STRIDE: Knowledge-based secondary structure assignment 1IV6
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1IV6
REM 1IV6
REM Residue accessible surface area calculation 1IV6
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1IV6
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1IV6
REM 1IV6
REM ------------------------ General information ----------------------- 1IV6
REM 1IV6
HDR DNA BINDING PROTEIN/DNA 14-MAR-02 1IV6 1IV6
CMP MOL_ID: 1; 1IV6
CMP MOLECULE: TELOMERIC REPEAT BINDING FACTOR 1; 1IV6
CMP CHAIN: A; 1IV6
CMP FRAGMENT: DNA-BINDING DOMAIN; 1IV6
CMP SYNONYM: TRF1; 1IV6
CMP ENGINEERED: YES; 1IV6
CMP MOL_ID: 2; 1IV6
CMP MOLECULE: 5'-D(*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'; 1IV6
CMP CHAIN: B; 1IV6
CMP ENGINEERED: YES; 1IV6
CMP OTHER_DETAILS: HUMAN NATURAL TELOMERIC SEQUENCE; 1IV6
CMP MOL_ID: 3; 1IV6
CMP MOLECULE: 5'-D(*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*C)-3'; 1IV6
CMP CHAIN: C; 1IV6
CMP ENGINEERED: YES; 1IV6
CMP OTHER_DETAILS: HUMAN NATURAL TELOMERIC SEQUENCE 1IV6
SRC MOL_ID: 1; 1IV6
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 1IV6
SRC ORGANISM_COMMON: HUMAN; 1IV6
SRC ORGANISM_TAXID: 9606; 1IV6
SRC GENE: TRF1; 1IV6
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1IV6
SRC EXPRESSION_SYSTEM_TAXID: 562; 1IV6
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; 1IV6
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1IV6
SRC EXPRESSION_SYSTEM_PLASMID: PET13A; 1IV6
SRC MOL_ID: 2; 1IV6
SRC SYNTHETIC: YES; 1IV6
SRC MOL_ID: 3; 1IV6
SRC SYNTHETIC: YES 1IV6
AUT T.NISHIKAWA,H.OKAMURA,A.NAGADOI,P.KONIG,D.RHODES, 1IV6
AUT Y.NISHIMURA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE 1IV6
AUT (RSGI) 1IV6
REM 1IV6
REM -------------------- Secondary structure summary ------------------- 1IV6
REM 1IV6
CHN /data/npidb/pdb/pdb_new/all/pdb1iv6.pdb A 1IV6
REM 1IV6
REM . . . . . 1IV6
SEQ 1 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 50 1IV6
STR HHHHHHHHHHHHHHTTTTHHHHHHH TTTT HHHHHHHHHHH 1IV6
REM 1IV6
REM 1IV6
SEQ 51 KKLKLIS 57 1IV6
STR HHHH 1IV6
REM 1IV6
REM 1IV6
REM 1IV6
LOC AlphaHelix TRP 385 A TYR 398 A 1IV6
LOC AlphaHelix TRP 403 A HIS 409 A 1IV6
LOC AlphaHelix SER 417 A LYS 431 A 1IV6
LOC TurnIV GLY 399 A ASN 402 A 1IV6
LOC TurnIV PHE 412 A ARG 415 A 1IV6
REM 1IV6
REM --------------- Detailed secondary structure assignment------------- 1IV6
REM 1IV6
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1IV6
ASG ARG A 378 1 C Coil 360.00 85.40 300.7 1IV6
ASG LYS A 379 2 C Coil -43.41 130.70 202.7 1IV6
ASG ARG A 380 3 C Coil -54.70 133.47 233.4 1IV6
ASG GLN A 381 4 C Coil -75.67 125.66 92.1 1IV6
ASG ALA A 382 5 C Coil -91.54 132.81 77.3 1IV6
ASG TRP A 383 6 C Coil -64.27 141.30 37.8 1IV6
ASG LEU A 384 7 C Coil -108.53 167.48 109.9 1IV6
ASG TRP A 385 8 H AlphaHelix -60.14 -18.56 178.1 1IV6
ASG GLU A 386 9 H AlphaHelix -62.23 -54.52 142.5 1IV6
ASG GLU A 387 10 H AlphaHelix -65.76 -55.36 14.3 1IV6
ASG ASP A 388 11 H AlphaHelix -62.25 -45.17 29.8 1IV6
ASG LYS A 389 12 H AlphaHelix -67.76 -41.58 121.1 1IV6
ASG ASN A 390 13 H AlphaHelix -60.75 -42.90 38.8 1IV6
ASG LEU A 391 14 H AlphaHelix -61.07 -49.02 0.0 1IV6
ASG ARG A 392 15 H AlphaHelix -55.28 -45.18 143.3 1IV6
ASG SER A 393 16 H AlphaHelix -58.06 -51.56 37.4 1IV6
ASG GLY A 394 17 H AlphaHelix -49.00 -49.59 0.0 1IV6
ASG VAL A 395 18 H AlphaHelix -57.01 -46.18 10.6 1IV6
ASG ARG A 396 19 H AlphaHelix -73.22 -40.09 196.3 1IV6
ASG LYS A 397 20 H AlphaHelix -80.30 -31.90 116.9 1IV6
ASG TYR A 398 21 H AlphaHelix -128.87 14.94 60.6 1IV6
ASG GLY A 399 22 T Turn 83.74 149.44 28.1 1IV6
ASG GLU A 400 23 T Turn -58.89 -75.83 52.9 1IV6
ASG GLY A 401 24 T Turn -72.48 57.86 53.8 1IV6
ASG ASN A 402 25 T Turn -148.23 49.42 54.7 1IV6
ASG TRP A 403 26 H AlphaHelix -60.21 -29.73 25.1 1IV6
ASG SER A 404 27 H AlphaHelix -61.43 -55.45 74.2 1IV6
ASG LYS A 405 28 H AlphaHelix -55.16 -50.17 79.0 1IV6
ASG ILE A 406 29 H AlphaHelix -54.05 -48.03 0.0 1IV6
ASG LEU A 407 30 H AlphaHelix -63.46 -35.39 42.0 1IV6
ASG LEU A 408 31 H AlphaHelix -70.91 -50.59 131.5 1IV6
ASG HIS A 409 32 H AlphaHelix -63.87 -55.36 96.1 1IV6
ASG TYR A 410 33 C Coil -115.82 140.92 60.1 1IV6
ASG LYS A 411 34 C Coil -88.11 162.33 144.1 1IV6
ASG PHE A 412 35 T Turn -144.95 174.14 33.9 1IV6
ASG ASN A 413 36 T Turn -56.63 -66.81 117.3 1IV6
ASG ASN A 414 37 T Turn -165.34 73.29 127.6 1IV6
ASG ARG A 415 38 T Turn -111.97 165.87 23.2 1IV6
ASG THR A 416 39 C Coil -134.07 174.62 65.7 1IV6
ASG SER A 417 40 H AlphaHelix -57.02 -43.61 62.0 1IV6
ASG VAL A 418 41 H AlphaHelix -55.49 -56.90 95.4 1IV6
ASG MET A 419 42 H AlphaHelix -53.04 -59.90 65.9 1IV6
ASG LEU A 420 43 H AlphaHelix -51.77 -52.34 0.0 1IV6
ASG LYS A 421 44 H AlphaHelix -61.77 -50.78 84.3 1IV6
ASG ASP A 422 45 H AlphaHelix -61.92 -32.08 43.7 1IV6
ASG ARG A 423 46 H AlphaHelix -63.07 -54.85 73.8 1IV6
ASG TRP A 424 47 H AlphaHelix -62.47 -31.64 9.0 1IV6
ASG ARG A 425 48 H AlphaHelix -60.87 -59.16 142.4 1IV6
ASG THR A 426 49 H AlphaHelix -55.55 -46.07 80.3 1IV6
ASG MET A 427 50 H AlphaHelix -55.03 -61.89 15.4 1IV6
ASG LYS A 428 51 H AlphaHelix -62.37 -35.20 67.5 1IV6
ASG LYS A 429 52 H AlphaHelix -53.65 -36.92 162.6 1IV6
ASG LEU A 430 53 H AlphaHelix -103.52 -37.86 132.4 1IV6
ASG LYS A 431 54 H AlphaHelix -100.53 -22.59 122.6 1IV6
ASG LEU A 432 55 C Coil 56.81 75.96 144.7 1IV6
ASG ILE A 433 56 C Coil -133.07 144.46 41.8 1IV6
ASG SER A 434 57 C Coil -163.87 360.00 97.9 1IV6