Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/1f7y.std.txt Дата изменения: Tue Oct 2 14:03:14 2012 Дата индексирования: Sun Feb 3 20:30:11 2013 Кодировка:

REM -------------------------------------------------------------------- 1F7Y
REM 1F7Y
REM STRIDE: Knowledge-based secondary structure assignment 1F7Y
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1F7Y
REM 1F7Y
REM Residue accessible surface area calculation 1F7Y
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1F7Y
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1F7Y
REM 1F7Y
REM ------------------------ General information ----------------------- 1F7Y
REM 1F7Y
HDR RIBOSOME 28-JUN-00 1F7Y 1F7Y
CMP MOL_ID: 1; 1F7Y
CMP MOLECULE: 16S RIBOSOMAL RNA FRAGMENT; 1F7Y
CMP CHAIN: B; 1F7Y
CMP FRAGMENT: 57 RESIDUES; 1F7Y
CMP ENGINEERED: YES; 1F7Y
CMP MOL_ID: 2; 1F7Y
CMP MOLECULE: 30S RIBOSOMAL PROTEIN S15; 1F7Y
CMP CHAIN: A; 1F7Y
CMP ENGINEERED: YES 1F7Y
SRC MOL_ID: 1; 1F7Y
SRC SYNTHETIC: YES; 1F7Y
SRC OTHER_DETAILS: SEQUENCE OCCURS NATURALLY IN THERMUS THERMOPH 1F7Y
SRC MOL_ID: 2; 1F7Y
SRC ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; 1F7Y
SRC ORGANISM_TAXID: 274; 1F7Y
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1F7Y
SRC EXPRESSION_SYSTEM_TAXID: 562 1F7Y
AUT E.ENNIFAR,A.NIKOULINE,A.SERGANOV,S.TISHCHENKO,N.NEVSKAYA,M.GA 1F7Y
AUT B.EHRESMANN,C.EHRESMANN,S.NIKONOV,P.DUMAS 1F7Y
REM 1F7Y
REM -------------------- Secondary structure summary ------------------- 1F7Y
REM 1F7Y
CHN /data/npidb/pdb/pdb_new/all/pdb1f7y.pdb A 1F7Y
REM 1F7Y
REM . . . . . 1F7Y
SEQ 1 PITKEEKQKVQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHS 50 1F7Y
STR TTTHHHHH GGG TTTTTTTTTTHHHHHHHHHHHHHHHHHHHHTTTTTHH 1F7Y
REM 1F7Y
REM . . . 1F7Y
SEQ 51 HRGLLVGQRRRLLRYLQREDPERYRLIEKLGI 82 1F7Y
STR HHHHHHHHHHHHHHHHHHH HHHHGGGTTTT 1F7Y
REM 1F7Y
REM 1F7Y
REM 1F7Y
LOC AlphaHelix LYS 4 A GLN 8 A 1F7Y
LOC AlphaHelix GLU 25 A VAL 44 A 1F7Y
LOC AlphaHelix HIS 50 A GLU 72 A 1F7Y
LOC AlphaHelix PRO 74 A TYR 77 A 1F7Y
LOC 310Helix VAL 10 A GLU 13 A 1F7Y
LOC 310Helix ARG 78 A ILE 81 A 1F7Y
LOC TurnIV ALA 15 A PRO 18 A 1F7Y
LOC TurnIV PHE 17 A ASP 20 A 1F7Y
LOC TurnIV ASP 20 A SER 23 A 1F7Y
LOC TurnI HIS 45 A ASP 48 A 1F7Y
LOC TurnIV ILE 81 A LEU 84 A 1F7Y
LOC TurnIV GLU 82 A GLY 85 A 1F7Y
LOC GammaClassic PRO 1 A THR 3 A 1F7Y
LOC GammaClassic SER 23 A GLU 25 A 1F7Y
LOC GammaClassic ASP 48 A HIS 50 A 1F7Y
REM 1F7Y
REM --------------- Detailed secondary structure assignment------------- 1F7Y
REM 1F7Y
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1F7Y
ASG PRO A 1 1 T Turn 360.00 -49.91 152.0 1F7Y
ASG ILE A 2 2 T Turn 75.66 -71.23 27.5 1F7Y
ASG THR A 3 3 T Turn 76.44 163.80 83.0 1F7Y
ASG LYS A 4 4 H AlphaHelix -57.88 -39.90 148.2 1F7Y
ASG GLU A 5 5 H AlphaHelix -66.63 21.70 143.7 1F7Y
ASG GLU A 6 6 H AlphaHelix -148.17 -67.93 66.1 1F7Y
ASG LYS A 7 7 H AlphaHelix -57.87 -38.86 119.9 1F7Y
ASG GLN A 8 8 H AlphaHelix -75.70 -33.75 108.4 1F7Y
ASG LYS A 9 9 C Coil -59.41 -42.75 115.1 1F7Y
ASG VAL A 10 10 G 310Helix -67.30 360.00 25.4 1F7Y
ASG GLN A 12 11 G 310Helix 360.00 -8.73 155.0 1F7Y
ASG GLU A 13 12 G 310Helix -99.97 -41.11 105.2 1F7Y
ASG PHE A 14 13 C Coil -94.84 -8.97 21.4 1F7Y
ASG ALA A 15 14 T Turn -54.69 142.32 30.5 1F7Y
ASG ARG A 16 15 T Turn -85.96 -7.45 134.4 1F7Y
ASG PHE A 17 16 T Turn -175.01 153.06 115.4 1F7Y
ASG PRO A 18 17 T Turn -51.76 80.91 139.6 1F7Y
ASG GLY A 19 18 T Turn 143.19 -9.87 56.5 1F7Y
ASG ASP A 20 19 T Turn -63.11 128.10 17.2 1F7Y
ASG THR A 21 20 T Turn -140.64 -0.08 116.9 1F7Y
ASG GLY A 22 21 T Turn -152.25 35.71 45.6 1F7Y
ASG SER A 23 22 T Turn -86.87 37.03 10.6 1F7Y
ASG THR A 24 23 T Turn 71.25 -59.26 20.6 1F7Y
ASG GLU A 25 24 H AlphaHelix -61.84 -63.01 14.4 1F7Y
ASG VAL A 26 25 H AlphaHelix -49.43 -45.70 11.2 1F7Y
ASG GLN A 27 26 H AlphaHelix -57.85 -40.31 78.1 1F7Y
ASG VAL A 28 27 H AlphaHelix -74.79 -49.35 2.6 1F7Y
ASG ALA A 29 28 H AlphaHelix -49.64 -72.68 5.0 1F7Y
ASG LEU A 30 29 H AlphaHelix -57.51 -12.38 50.9 1F7Y
ASG LEU A 31 30 H AlphaHelix -78.70 -36.27 32.0 1F7Y
ASG THR A 32 31 H AlphaHelix -78.24 -12.65 12.4 1F7Y
ASG LEU A 33 32 H AlphaHelix -77.11 -41.86 31.8 1F7Y
ASG ARG A 34 33 H AlphaHelix -89.92 -6.61 150.5 1F7Y
ASG ILE A 35 34 H AlphaHelix -74.27 -39.79 18.6 1F7Y
ASG ASN A 36 35 H AlphaHelix -75.72 -55.51 81.6 1F7Y
ASG ARG A 37 36 H AlphaHelix -42.41 -20.70 105.5 1F7Y
ASG LEU A 38 37 H AlphaHelix -110.87 -21.50 39.9 1F7Y
ASG SER A 39 38 H AlphaHelix -64.01 -47.25 65.9 1F7Y
ASG GLU A 40 39 H AlphaHelix -57.86 -41.65 135.4 1F7Y
ASG HIS A 41 40 H AlphaHelix -55.11 -65.27 57.4 1F7Y
ASG LEU A 42 41 H AlphaHelix -39.20 -30.90 27.5 1F7Y
ASG LYS A 43 42 H AlphaHelix -63.05 -62.92 134.4 1F7Y
ASG VAL A 44 43 H AlphaHelix -52.00 -36.86 118.2 1F7Y
ASG HIS A 45 44 T Turn -116.74 79.89 83.1 1F7Y
ASG LYS A 46 45 T Turn -74.21 -5.61 156.9 1F7Y
ASG LYS A 47 46 T Turn -97.29 -4.85 188.7 1F7Y
ASG ASP A 48 47 T Turn -56.33 -57.51 54.5 1F7Y
ASG HIS A 49 48 T Turn 61.40 -69.22 117.1 1F7Y
ASG HIS A 50 49 H AlphaHelix -42.68 -44.70 120.2 1F7Y
ASG SER A 51 50 H AlphaHelix -67.75 -22.29 44.4 1F7Y
ASG HIS A 52 51 H AlphaHelix -65.49 -26.48 83.4 1F7Y
ASG ARG A 53 52 H AlphaHelix -50.77 -50.43 148.6 1F7Y
ASG GLY A 54 53 H AlphaHelix -70.48 -31.56 54.9 1F7Y
ASG LEU A 55 54 H AlphaHelix -55.64 -40.37 22.3 1F7Y
ASG LEU A 56 55 H AlphaHelix -71.22 360.00 110.5 1F7Y
ASG VAL A 59 56 H AlphaHelix 360.00 -44.98 62.8 1F7Y
ASG GLY A 60 57 H AlphaHelix -63.53 -46.14 32.6 1F7Y
ASG GLN A 61 58 H AlphaHelix -56.77 -46.65 76.7 1F7Y
ASG ARG A 62 59 H AlphaHelix -59.68 -37.36 45.3 1F7Y
ASG ARG A 63 60 H AlphaHelix -77.41 -26.66 109.9 1F7Y
ASG ARG A 64 61 H AlphaHelix -74.52 -34.55 152.4 1F7Y
ASG LEU A 65 62 H AlphaHelix -69.42 -50.16 20.8 1F7Y
ASG LEU A 66 63 H AlphaHelix -51.99 -45.64 4.0 1F7Y
ASG ARG A 67 64 H AlphaHelix -63.27 -37.77 145.6 1F7Y
ASG TYR A 68 65 H AlphaHelix -61.29 -52.15 105.2 1F7Y
ASG LEU A 69 66 H AlphaHelix -68.91 -10.22 1.4 1F7Y
ASG GLN A 70 67 H AlphaHelix -83.91 -27.44 85.9 1F7Y
ASG ARG A 71 68 H AlphaHelix -85.21 -53.20 130.4 1F7Y
ASG GLU A 72 69 H AlphaHelix -71.08 -30.09 120.6 1F7Y
ASG ASP A 73 70 C Coil -151.12 71.53 30.5 1F7Y
ASG PRO A 74 71 H AlphaHelix -41.91 -54.40 66.6 1F7Y
ASG GLU A 75 72 H AlphaHelix -42.61 -62.85 132.5 1F7Y
ASG ARG A 76 73 H AlphaHelix -56.64 -24.24 71.2 1F7Y
ASG TYR A 77 74 H AlphaHelix -67.23 -48.32 25.3 1F7Y
ASG ARG A 78 75 G 310Helix -63.94 360.00 152.3 1F7Y
ASG LEU A 80 76 G 310Helix 360.00 -47.28 24.7 1F7Y
ASG ILE A 81 77 G 310Helix -58.15 -1.64 33.7 1F7Y
ASG GLU A 82 78 T Turn -104.01 -178.59 135.0 1F7Y
ASG LYS A 83 79 T Turn 59.65 4.27 115.1 1F7Y
ASG LEU A 84 80 T Turn -155.14 -44.57 72.9 1F7Y
ASG GLY A 85 81 T Turn 75.26 122.82 54.0 1F7Y
ASG ILE A 86 82 C Coil -99.68 360.00 110.9 1F7Y