Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/1f5e.std.txt Дата изменения: Thu Jan 20 20:32:42 2011 Дата индексирования: Fri Feb 11 21:00:57 2011 Кодировка:

REM -------------------------------------------------------------------- 1F5E
REM 1F5E
REM STRIDE: Knowledge-based secondary structure assignment 1F5E
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1F5E
REM 1F5E
REM Residue accessible surface area calculation 1F5E
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1F5E
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1F5E
REM 1F5E
REM ------------------------ General information ----------------------- 1F5E
REM 1F5E
HDR TRANSCRIPTION/DNA 14-JUN-00 1F5E 1F5E
CMP MOL_ID: 1; 1F5E
CMP MOLECULE: DNA (5'-D(P*CP*GP*TP*GP*CP*GP*GP*AP*TP*C)-3'); 1F5E
CMP CHAIN: A; 1F5E
CMP ENGINEERED: YES; 1F5E
CMP OTHER_DETAILS: ALCR CONSENSUS HALF-TARGET; 1F5E
CMP MOL_ID: 2; 1F5E
CMP MOLECULE: DNA (5'-D(P*GP*AP*TP*CP*CP*GP*CP*AP*CP*G)-3'); 1F5E
CMP CHAIN: B; 1F5E
CMP ENGINEERED: YES; 1F5E
CMP OTHER_DETAILS: ALCR CONSENSUS HALF-TARGET; 1F5E
CMP MOL_ID: 3; 1F5E
CMP MOLECULE: ETHANOL REGULON TRANSCRIPTIONAL FACTOR; 1F5E
CMP CHAIN: P; 1F5E
CMP FRAGMENT: N-TERMINAL DNA-BINDING DOMAIN, RESIDUES 1-60; 1F5E
CMP SYNONYM: REGULATORY PROTEIN ALCR; 1F5E
CMP ENGINEERED: YES; 1F5E
CMP MUTATION: YES 1F5E
SRC MOL_ID: 1; 1F5E
SRC SYNTHETIC: YES; 1F5E
SRC MOL_ID: 2; 1F5E
SRC SYNTHETIC: YES; 1F5E
SRC MOL_ID: 3; 1F5E
SRC ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS; 1F5E
SRC ORGANISM_TAXID: 162425; 1F5E
SRC VARIANT: EMERICELLA; 1F5E
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1F5E
SRC EXPRESSION_SYSTEM_TAXID: 562 1F5E
AUT B.CAHUZAC,R.CERDAN,B.FELENBOK,E.GUITTET 1F5E
REM 1F5E
REM -------------------- Secondary structure summary ------------------- 1F5E
REM 1F5E
CHN /data/npidb/pdb/pdb_new/all/pdb1f5e.pdb P 1F5E
REM 1F5E
REM . . . . . 1F5E
SEQ 1 GSMADTRRRQNHSCDPCRKGKRRCDAPENRNEANENGWVSCSNCKRWNKD 50 1F5E
STR TTTTTT TTTT HHHHHH TTTTHHHHHHH HHHHHH 1F5E
REM 1F5E
REM . 1F5E
SEQ 51 CTFNWLSSQRSKNSS 65 1F5E
STR HHHHHHHTTTT 1F5E
REM 1F5E
REM 1F5E
REM 1F5E
LOC AlphaHelix ASP 13 P GLY 18 P 1F5E
LOC AlphaHelix ARG 28 P ASN 34 P 1F5E
LOC AlphaHelix SER 40 P TRP 45 P 1F5E
LOC AlphaHelix ASN 52 P ARG 58 P 1F5E
LOC TurnIV GLY -1 P ALA 2 P 1F5E
LOC TurnIV SER 0 P ASP 3 P 1F5E
LOC TurnIV MET 1 P THR 4 P 1F5E
LOC TurnIV ARG 7 P HIS 10 P 1F5E
LOC TurnIV ALA 24 P ASN 27 P 1F5E
LOC TurnI PRO 25 P ARG 28 P 1F5E
LOC TurnIV ARG 58 P ASN 61 P 1F5E
LOC TurnIV SER 59 P SER 62 P 1F5E
REM 1F5E
REM --------------- Detailed secondary structure assignment------------- 1F5E
REM 1F5E
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1F5E
ASG GLY P -1 1 T Turn 360.00 92.74 75.0 1F5E
ASG SER P 0 2 T Turn -98.41 -70.15 34.8 1F5E
ASG MET P 1 3 T Turn -151.60 23.87 57.6 1F5E
ASG ALA P 2 4 T Turn -81.71 -59.66 62.3 1F5E
ASG ASP P 3 5 T Turn -97.57 54.87 97.9 1F5E
ASG THR P 4 6 T Turn -91.05 15.10 54.7 1F5E
ASG ARG P 5 7 C Coil -152.92 -171.00 184.8 1F5E
ASG ARG P 6 8 C Coil 70.40 133.02 197.5 1F5E
ASG ARG P 7 9 T Turn 79.23 66.93 153.8 1F5E
ASG GLN P 8 10 T Turn -131.38 -55.74 143.0 1F5E
ASG ASN P 9 11 T Turn -146.42 2.43 38.9 1F5E
ASG HIS P 10 12 T Turn 67.21 144.34 84.1 1F5E
ASG SER P 11 13 C Coil -112.56 156.81 25.9 1F5E
ASG CYS P 12 14 C Coil -71.33 163.23 0.0 1F5E
ASG ASP P 13 15 H AlphaHelix -44.21 -51.45 38.5 1F5E
ASG PRO P 14 16 H AlphaHelix -68.48 -26.27 9.7 1F5E
ASG CYS P 15 17 H AlphaHelix -68.82 -50.90 0.0 1F5E
ASG ARG P 16 18 H AlphaHelix -58.99 -32.45 89.6 1F5E
ASG LYS P 17 19 H AlphaHelix -77.49 -28.16 140.7 1F5E
ASG GLY P 18 20 H AlphaHelix -102.35 2.46 39.9 1F5E
ASG LYS P 19 21 C Coil 60.86 66.58 181.3 1F5E
ASG ARG P 20 22 C Coil -146.57 138.43 108.3 1F5E
ASG ARG P 21 23 C Coil -73.41 165.40 143.5 1F5E
ASG CYS P 22 24 C Coil -160.96 177.26 2.9 1F5E
ASG ASP P 23 25 C Coil -80.82 -53.41 84.8 1F5E
ASG ALA P 24 26 T Turn -38.31 100.10 0.2 1F5E
ASG PRO P 25 27 T Turn -95.05 -167.65 43.7 1F5E
ASG GLU P 26 28 T Turn -63.99 -3.44 124.8 1F5E
ASG ASN P 27 29 T Turn -122.41 20.67 72.2 1F5E
ASG ARG P 28 30 H AlphaHelix -56.88 -38.42 8.6 1F5E
ASG ASN P 29 31 H AlphaHelix -61.24 -54.12 54.0 1F5E
ASG GLU P 30 32 H AlphaHelix -62.79 -15.13 109.7 1F5E
ASG ALA P 31 33 H AlphaHelix -72.96 -49.93 14.7 1F5E
ASG ASN P 32 34 H AlphaHelix -59.50 -30.09 68.1 1F5E
ASG GLU P 33 35 H AlphaHelix -65.91 -39.41 126.1 1F5E
ASG ASN P 34 36 H AlphaHelix -102.57 20.08 119.7 1F5E
ASG GLY P 35 37 C Coil 72.86 101.19 54.9 1F5E
ASG TRP P 36 38 C Coil -104.53 -124.12 62.6 1F5E
ASG VAL P 37 39 C Coil 158.69 -91.80 99.1 1F5E
ASG SER P 38 40 C Coil -156.87 130.73 27.8 1F5E
ASG CYS P 39 41 C Coil -63.66 -169.79 1.2 1F5E
ASG SER P 40 42 H AlphaHelix -66.15 -32.35 42.9 1F5E
ASG ASN P 41 43 H AlphaHelix -73.36 -78.46 0.6 1F5E
ASG CYS P 42 44 H AlphaHelix -43.32 -28.03 0.8 1F5E
ASG LYS P 43 45 H AlphaHelix -65.78 -57.79 111.3 1F5E
ASG ARG P 44 46 H AlphaHelix -61.48 -33.35 142.3 1F5E
ASG TRP P 45 47 H AlphaHelix -109.33 23.51 135.5 1F5E
ASG ASN P 46 48 C Coil 27.89 44.41 118.9 1F5E
ASG LYS P 47 49 C Coil -72.74 -123.07 107.0 1F5E
ASG ASP P 48 50 C Coil -150.00 72.64 75.0 1F5E
ASG CYS P 49 51 C Coil -43.07 101.58 14.6 1F5E
ASG THR P 50 52 C Coil -147.13 139.92 26.3 1F5E
ASG PHE P 51 53 C Coil -131.85 23.24 14.9 1F5E
ASG ASN P 52 54 H AlphaHelix -96.26 -77.86 73.4 1F5E
ASG TRP P 53 55 H AlphaHelix -43.47 -27.02 100.4 1F5E
ASG LEU P 54 56 H AlphaHelix -70.63 -53.73 3.0 1F5E
ASG SER P 55 57 H AlphaHelix -47.67 -22.09 68.0 1F5E
ASG SER P 56 58 H AlphaHelix -106.14 -20.54 74.3 1F5E
ASG GLN P 57 59 H AlphaHelix -80.39 -39.42 104.8 1F5E
ASG ARG P 58 60 H AlphaHelix -77.67 -70.06 98.2 1F5E
ASG SER P 59 61 T Turn -114.90 -10.23 70.6 1F5E
ASG LYS P 60 62 T Turn -69.27 -158.64 63.0 1F5E
ASG ASN P 61 63 T Turn 160.60 143.69 60.6 1F5E
ASG SER P 62 64 T Turn -157.68 177.67 37.7 1F5E
ASG SER P 63 65 C Coil -100.70 360.00 98.3 1F5E