Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/1dul.std.txt Дата изменения: Wed Jan 19 01:06:43 2011 Дата индексирования: Fri Feb 11 21:00:13 2011 Кодировка:

REM -------------------------------------------------------------------- 1DUL
REM 1DUL
REM STRIDE: Knowledge-based secondary structure assignment 1DUL
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1DUL
REM 1DUL
REM Residue accessible surface area calculation 1DUL
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1DUL
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1DUL
REM 1DUL
REM ------------------------ General information ----------------------- 1DUL
REM 1DUL
HDR SIGNALING PROTEIN/RNA 17-JAN-00 1DUL 1DUL
CMP MOL_ID: 1; 1DUL
CMP MOLECULE: 4.5 S RNA DOMAIN IV; 1DUL
CMP CHAIN: B; 1DUL
CMP FRAGMENT: 4.5S RNA FRAGMENT (RESIDUES 32-74); 1DUL
CMP ENGINEERED: YES; 1DUL
CMP MUTATION: YES; 1DUL
CMP MOL_ID: 2; 1DUL
CMP MOLECULE: SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR 1DUL
CMP HOMOLOG); 1DUL
CMP CHAIN: A; 1DUL
CMP FRAGMENT: C TERMINAL DOMAIN (RESIDUES 328-432); 1DUL
CMP SYNONYM: FFH-M DOMAIN, P48; 1DUL
CMP ENGINEERED: YES; 1DUL
CMP MUTATION: YES 1DUL
SRC MOL_ID: 1; 1DUL
SRC SYNTHETIC: YES; 1DUL
SRC MOL_ID: 2; 1DUL
SRC ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; 1DUL
SRC ORGANISM_TAXID: 562; 1DUL
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1DUL
SRC EXPRESSION_SYSTEM_TAXID: 562 1DUL
AUT R.T.BATEY,R.P.RAMBO,L.LUCAST,B.RHA,J.DOUDNA 1DUL
REM 1DUL
REM -------------------- Secondary structure summary ------------------- 1DUL
REM 1DUL
CHN /data/npidb/pdb/pdb_new/all/pdb1dul.pdb A 1DUL
REM 1DUL
REM . . . . . 1DUL
SEQ 1 FDLNDFLEQKVLVREAIINSTKERAKPEIIKGSRKRRIAAGSGQVQDVNR 50 1DUL
STR HHHHHHHTTTTTHHHHHH GGGTTGGG HHHHHHHHHHH HHHHHH 1DUL
REM 1DUL
REM . 1DUL
SEQ 51 LLKQFDDQRKK 61 1DUL
STR HHHHHHH TTT 1DUL
REM 1DUL
REM 1DUL
REM 1DUL
LOC AlphaHelix LEU 3 A GLN 9 A 1DUL
LOC AlphaHelix GLU 29 A SER 34 A 1DUL
LOC AlphaHelix GLY 48 A SER 58 A 1DUL
LOC AlphaHelix VAL 62 A ASP 74 A 1DUL
LOC 310Helix LYS 38 A ARG 40 A 1DUL
LOC 310Helix PRO 43 A ILE 45 A 1DUL
LOC TurnIV LYS 23 A VAL 26 A 1DUL
LOC TurnI VAL 24 A ARG 27 A 1DUL
LOC TurnIV LEU 25 A GLU 29 A 1DUL
LOC TurnVIII ARG 40 A PRO 43 A 1DUL
LOC GammaClassic ARG 77 A LYS 81 A 1DUL
REM 1DUL
REM --------------- Detailed secondary structure assignment------------- 1DUL
REM 1DUL
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1DUL
ASG PHE A 1 1 C Coil 360.00 113.55 122.9 1DUL
ASG ASP A 2 2 C Coil -127.18 -168.11 34.5 1DUL
ASG LEU A 3 3 H AlphaHelix -65.91 -18.19 6.8 1DUL
ASG ASN A 4 4 H AlphaHelix -71.54 -42.92 66.1 1DUL
ASG ASP A 5 5 H AlphaHelix -67.33 -35.15 78.0 1DUL
ASG PHE A 6 6 H AlphaHelix -71.57 -34.02 56.3 1DUL
ASG LEU A 7 7 H AlphaHelix -61.48 -47.87 42.4 1DUL
ASG GLU A 8 8 H AlphaHelix -67.17 -34.28 160.8 1DUL
ASG GLN A 9 9 H AlphaHelix -57.41 360.00 160.9 1DUL
ASG LYS A 23 10 T Turn 360.00 4.14 127.4 1DUL
ASG VAL A 24 11 T Turn -75.87 -51.65 86.8 1DUL
ASG LEU A 25 12 T Turn -57.46 -36.45 75.7 1DUL
ASG VAL A 26 13 T Turn -66.67 -42.28 61.4 1DUL
ASG ARG A 27 14 T Turn -63.59 360.00 57.6 1DUL
ASG GLU A 29 15 H AlphaHelix 360.00 -37.19 108.6 1DUL
ASG ALA A 30 16 H AlphaHelix -59.67 -47.49 33.7 1DUL
ASG ILE A 31 17 H AlphaHelix -57.93 -40.94 21.3 1DUL
ASG ILE A 32 18 H AlphaHelix -68.79 -32.97 12.3 1DUL
ASG ASN A 33 19 H AlphaHelix -65.51 -19.64 102.4 1DUL
ASG SER A 34 20 H AlphaHelix -90.22 360.00 37.4 1DUL
ASG THR A 36 21 C Coil 360.00 360.00 85.7 1DUL
ASG LYS A 38 22 G 310Helix 360.00 -39.53 183.8 1DUL
ASG GLU A 39 23 G 310Helix -68.60 -36.75 5.0 1DUL
ASG ARG A 40 24 G 310Helix -68.75 -35.50 70.6 1DUL
ASG ALA A 41 25 T Turn -75.82 -31.11 60.1 1DUL
ASG LYS A 42 26 T Turn -142.07 75.30 101.4 1DUL
ASG PRO A 43 27 G 310Helix -52.31 -23.90 15.7 1DUL
ASG GLU A 44 28 G 310Helix -63.88 -18.69 110.7 1DUL
ASG ILE A 45 29 G 310Helix -79.16 -8.33 41.5 1DUL
ASG ILE A 46 30 C Coil -78.24 95.33 13.6 1DUL
ASG LYS A 47 31 C Coil -105.13 -163.44 140.8 1DUL
ASG GLY A 48 32 H AlphaHelix -47.03 -54.49 43.2 1DUL
ASG SER A 49 33 H AlphaHelix -63.30 -43.79 79.3 1DUL
ASG ARG A 50 34 H AlphaHelix -67.17 -36.50 94.8 1DUL
ASG LYS A 51 35 H AlphaHelix -61.82 -42.04 54.5 1DUL
ASG ARG A 52 36 H AlphaHelix -63.94 -41.53 153.0 1DUL
ASG ARG A 53 37 H AlphaHelix -64.43 -46.53 104.3 1DUL
ASG ILE A 54 38 H AlphaHelix -62.77 -43.14 7.0 1DUL
ASG ALA A 55 39 H AlphaHelix -61.55 -54.89 5.9 1DUL
ASG ALA A 56 40 H AlphaHelix -61.79 -38.54 84.6 1DUL
ASG GLY A 57 41 H AlphaHelix -66.44 -23.76 54.8 1DUL
ASG SER A 58 42 H AlphaHelix -106.86 6.98 36.0 1DUL
ASG GLY A 59 43 C Coil 68.37 360.00 89.7 1DUL
ASG GLN A 61 44 C Coil 360.00 161.24 130.9 1DUL
ASG VAL A 62 45 H AlphaHelix -59.38 -33.57 52.9 1DUL
ASG GLN A 63 46 H AlphaHelix -63.33 -29.84 120.7 1DUL
ASG ASP A 64 47 H AlphaHelix -70.58 -37.40 76.4 1DUL
ASG VAL A 65 48 H AlphaHelix -67.22 -40.24 1.8 1DUL
ASG ASN A 66 49 H AlphaHelix -61.15 -44.14 63.2 1DUL
ASG ARG A 67 50 H AlphaHelix -61.68 -47.16 50.4 1DUL
ASG LEU A 68 51 H AlphaHelix -56.74 -51.00 18.2 1DUL
ASG LEU A 69 52 H AlphaHelix -59.97 -37.28 29.6 1DUL
ASG LYS A 70 53 H AlphaHelix -64.91 -49.53 118.8 1DUL
ASG GLN A 71 54 H AlphaHelix -57.92 -43.23 122.9 1DUL
ASG PHE A 72 55 H AlphaHelix -59.00 -46.70 17.4 1DUL
ASG ASP A 73 56 H AlphaHelix -59.39 -43.28 62.9 1DUL
ASG ASP A 74 57 H AlphaHelix -62.58 360.00 97.2 1DUL
ASG GLN A 76 58 C Coil 360.00 -40.81 39.0 1DUL
ASG ARG A 77 59 T Turn -62.85 360.00 174.3 1DUL
ASG LYS A 80 60 T Turn 360.00 -36.80 122.2 1DUL
ASG LYS A 81 61 T Turn -83.24 360.00 237.8 1DUL