Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/3qmb.std.txt Дата изменения: Mon Oct 8 20:48:17 2012 Дата индексирования: Sun Feb 3 23:48:23 2013 Кодировка:

REM -------------------------------------------------------------------- 3QMB
REM 3QMB
REM STRIDE: Knowledge-based secondary structure assignment 3QMB
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3QMB
REM 3QMB
REM Residue accessible surface area calculation 3QMB
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3QMB
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3QMB
REM 3QMB
REM ------------------------ General information ----------------------- 3QMB
REM 3QMB
HDR DNA BINDING PROTEIN/DNA 04-FEB-11 3QMB 3QMB
CMP MOL_ID: 1; 3QMB
CMP MOLECULE: CPG-BINDING PROTEIN; 3QMB
CMP CHAIN: A; 3QMB
CMP FRAGMENT: CXXC-TYPE ZN FINGER, RESIDUES 161-222; 3QMB
CMP SYNONYM: CXXC-TYPE ZINC FINGER PROTEIN 1, PHD FINGER AND CXX 3QMB
CMP CONTAINING PROTEIN 1; 3QMB
CMP ENGINEERED: YES; 3QMB
CMP MOL_ID: 2; 3QMB
CMP MOLECULE: 5'-D(*GP*CP*CP*AP*CP*CP*GP*GP*TP*GP*GP*C)-3'; 3QMB
CMP CHAIN: B, C; 3QMB
CMP FRAGMENT: DNA (NONMETHYLATED CPG ISLAND); 3QMB
CMP ENGINEERED: YES 3QMB
SRC MOL_ID: 1; 3QMB
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 3QMB
SRC ORGANISM_COMMON: HUMAN; 3QMB
SRC ORGANISM_TAXID: 9606; 3QMB
SRC GENE: CFP1, CGBP, CXXC1, PCCX1, PHF18; 3QMB
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3QMB
SRC EXPRESSION_SYSTEM_TAXID: 469008; 3QMB
SRC EXPRESSION_SYSTEM_STRAIN: BL21-(DE3)-V2R-PRARE2; 3QMB
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3QMB
SRC EXPRESSION_SYSTEM_PLASMID: PET28-MHL; 3QMB
SRC MOL_ID: 2; 3QMB
SRC SYNTHETIC: YES; 3QMB
SRC OTHER_DETAILS: DNA WAS PURCHASED FROM INTEGRATED DNA TECHNOL 3QMB
SRC INC. 3QMB
AUT R.LAM,C.XU,C.B.BIAN,J.KANIA,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMIT 3QMB
AUT A.M.EDWARDS,A.BOCHKAREV,J.MIN,STRUCTURAL GENOMICS CONSORTIUM 3QMB
REM 3QMB
REM -------------------- Secondary structure summary ------------------- 3QMB
REM 3QMB
CHN /data/npidb/pdb/pdb_new/all/pdb3qmb.pdb A 3QMB
REM 3QMB
REM . . . . . 3QMB
SEQ 1 RSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRAR 50 3QMB
STR BTTBTTTT GGG TTTTHHHHH GGG TTTT GGG TTTTT 3QMB
REM 3QMB
REM 3QMB
SEQ 51 ESYK 54 3QMB
STR GGG 3QMB
REM 3QMB
REM 3QMB
REM 3QMB
LOC AlphaHelix ASP 189 A ASP 193 A 3QMB
LOC 310Helix ALA 178 A ARG 180 A 3QMB
LOC 310Helix LYS 195 A PHE 197 A 3QMB
LOC 310Helix ARG 208 A ARG 210 A 3QMB
LOC 310Helix GLU 218 A TYR 220 A 3QMB
LOC TurnI SER 169 A MET 172 A 3QMB
LOC TurnIV CYS 173 A CYS 176 A 3QMB
LOC TurnIV CYS 185 A CYS 188 A 3QMB
LOC TurnIV ASN 201 A ARG 204 A 3QMB
LOC TurnI CYS 212 A ARG 215 A 3QMB
LOC TurnIV GLN 213 A ALA 216 A 3QMB
REM 3QMB
REM --------------- Detailed secondary structure assignment------------- 3QMB
REM 3QMB
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3QMB
ASG ARG A 168 1 C Coil 360.00 91.06 116.5 3QMB
ASG SER A 169 2 B Bridge -122.30 -167.16 62.7 3QMB
ASG ALA A 170 3 T Turn -63.01 -27.90 85.7 3QMB
ASG ARG A 171 4 T Turn -109.30 5.70 124.7 3QMB
ASG MET A 172 5 B Bridge -138.09 118.94 58.7 3QMB
ASG CYS A 173 6 T Turn -80.21 -18.27 20.5 3QMB
ASG GLY A 174 7 T Turn 75.22 5.21 34.3 3QMB
ASG GLU A 175 8 T Turn -125.00 -30.74 126.8 3QMB
ASG CYS A 176 9 T Turn -71.90 167.55 16.4 3QMB
ASG GLU A 177 10 C Coil -56.26 -36.12 54.1 3QMB
ASG ALA A 178 11 G 310Helix -66.71 -46.24 5.5 3QMB
ASG CYS A 179 12 G 310Helix -60.94 -33.78 17.5 3QMB
ASG ARG A 180 13 G 310Helix -82.13 -4.48 159.5 3QMB
ASG ARG A 181 14 C Coil -83.24 135.60 122.5 3QMB
ASG THR A 182 15 C Coil -110.52 -11.81 118.4 3QMB
ASG GLU A 183 16 C Coil -101.85 135.72 159.4 3QMB
ASG ASP A 184 17 C Coil -77.83 141.30 29.6 3QMB
ASG CYS A 185 18 T Turn -72.66 -38.16 44.2 3QMB
ASG GLY A 186 19 T Turn 88.35 6.69 11.1 3QMB
ASG HIS A 187 20 T Turn -132.58 -8.80 152.4 3QMB
ASG CYS A 188 21 T Turn -84.47 172.17 17.1 3QMB
ASG ASP A 189 22 H AlphaHelix -63.01 -36.63 61.5 3QMB
ASG PHE A 190 23 H AlphaHelix -70.86 -40.61 9.8 3QMB
ASG CYS A 191 24 H AlphaHelix -66.91 -45.31 0.0 3QMB
ASG ARG A 192 25 H AlphaHelix -61.38 -24.99 145.7 3QMB
ASG ASP A 193 26 H AlphaHelix -72.93 -27.36 11.5 3QMB
ASG MET A 194 27 C Coil -69.03 140.82 45.9 3QMB
ASG LYS A 195 28 G 310Helix -53.03 -43.36 70.6 3QMB
ASG LYS A 196 29 G 310Helix -66.17 -13.96 138.5 3QMB
ASG PHE A 197 30 G 310Helix -110.06 16.45 86.5 3QMB
ASG GLY A 198 31 C Coil 86.71 8.57 73.0 3QMB
ASG GLY A 199 32 C Coil -88.96 174.93 18.6 3QMB
ASG PRO A 200 33 C Coil -87.97 -0.12 108.2 3QMB
ASG ASN A 201 34 T Turn 57.14 46.65 70.1 3QMB
ASG LYS A 202 35 T Turn -107.37 -15.35 73.2 3QMB
ASG ILE A 203 36 T Turn -98.52 -48.32 90.1 3QMB
ASG ARG A 204 37 T Turn 69.12 47.16 165.3 3QMB
ASG GLN A 205 38 C Coil -124.55 162.80 66.3 3QMB
ASG LYS A 206 39 C Coil -68.61 153.15 54.1 3QMB
ASG CYS A 207 40 C Coil -37.80 132.98 0.0 3QMB
ASG ARG A 208 41 G 310Helix -47.96 -37.78 76.1 3QMB
ASG LEU A 209 42 G 310Helix -73.33 -13.01 87.1 3QMB
ASG ARG A 210 43 G 310Helix -105.14 5.26 62.7 3QMB
ASG GLN A 211 44 C Coil -79.83 113.10 12.0 3QMB
ASG CYS A 212 45 T Turn -49.81 127.18 0.0 3QMB
ASG GLN A 213 46 T Turn -64.83 -28.15 114.4 3QMB
ASG LEU A 214 47 T Turn -95.33 -34.35 123.2 3QMB
ASG ARG A 215 48 T Turn -121.40 -10.89 108.7 3QMB
ASG ALA A 216 49 T Turn -71.65 155.00 5.3 3QMB
ASG ARG A 217 50 C Coil -56.53 139.31 138.1 3QMB
ASG GLU A 218 51 G 310Helix -55.61 -40.10 144.1 3QMB
ASG SER A 219 52 G 310Helix -72.87 -7.49 93.0 3QMB
ASG TYR A 220 53 G 310Helix -86.30 -29.44 33.3 3QMB
ASG LYS A 221 54 C Coil -58.68 360.00 85.6 3QMB