Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/3qws.std.txt Дата изменения: Mon Oct 8 21:01:21 2012 Дата индексирования: Sun Feb 3 23:49:23 2013 Кодировка:

REM -------------------------------------------------------------------- 3QWS
REM 3QWS
REM STRIDE: Knowledge-based secondary structure assignment 3QWS
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3QWS
REM 3QWS
REM Residue accessible surface area calculation 3QWS
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3QWS
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3QWS
REM 3QWS
REM ------------------------ General information ----------------------- 3QWS
REM 3QWS
HDR TRANSCRIPTION REPRESSOR/DNA 28-FEB-11 3QWS 3QWS
CMP MOL_ID: 1; 3QWS
CMP MOLECULE: GP39; 3QWS
CMP CHAIN: A, B; 3QWS
CMP SYNONYM: REPRESSOR PROTEIN; 3QWS
CMP ENGINEERED: YES; 3QWS
CMP MOL_ID: 2; 3QWS
CMP MOLECULE: 5'-D(*TP*TP*TP*AP*TP*AP*GP*CP*TP*AP*GP*CP*TP*AP*TP 3QWS
CMP 3'; 3QWS
CMP CHAIN: C, N; 3QWS
CMP ENGINEERED: YES 3QWS
SRC MOL_ID: 1; 3QWS
SRC ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE N15; 3QWS
SRC ORGANISM_TAXID: 40631; 3QWS
SRC GENE: CRO, GENE 39; 3QWS
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3QWS
SRC EXPRESSION_SYSTEM_TAXID: 469008; 3QWS
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 3QWS
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3QWS
SRC EXPRESSION_SYSTEM_PLASMID: PMD104 (PET21B-DERIVED); 3QWS
SRC MOL_ID: 2; 3QWS
SRC SYNTHETIC: YES; 3QWS
SRC ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE N15; 3QWS
SRC ORGANISM_TAXID: 40631 3QWS
AUT B.M.HALL,S.A.ROBERTS,M.H.J.CORDES 3QWS
REM 3QWS
REM -------------------- Secondary structure summary ------------------- 3QWS
REM 3QWS
CHN /data/npidb/pdb/pdb_new/all/pdb3qws.pdb A 3QWS
REM 3QWS
REM . . . . . 3QWS
SEQ 1 MKPEELVRHFGDVEKAAVGVGVTPGAVYQWLQAGEIPPLRQSDIEVRTAY 50 3QWS
STR HHHHHHHH HHHHHHHH HHHHHHHHHH HHHHHHHHHHHTT 3QWS
REM 3QWS
REM . 3QWS
SEQ 51 KLKSDFTSQRMG 62 3QWS
STR TTT HHHHHHH 3QWS
REM 3QWS
CHN /data/npidb/pdb/pdb_new/all/pdb3qws.pdb B 3QWS
REM 3QWS
REM . . . . . 3QWS
SEQ 1 MKPEELVRHFGDVEKAAVGVGVTPGAVYQWLQAGEIPPLRQSDIEVRTAY 50 3QWS
STR HHHHHHHH HHHHHHHH HHHHHHHHHH HHHHHHHHHHHTT 3QWS
REM 3QWS
REM . 3QWS
SEQ 51 KLKSDFTSQRMGK 63 3QWS
STR TTT HHHHHHH 3QWS
REM 3QWS
REM 3QWS
REM 3QWS
LOC AlphaHelix PRO 3 A PHE 10 A 3QWS
LOC AlphaHelix VAL 13 A VAL 20 A 3QWS
LOC AlphaHelix PRO 24 A ALA 33 A 3QWS
LOC AlphaHelix PRO 38 A THR 48 A 3QWS
LOC AlphaHelix ASP 55 A MET 61 A 3QWS
LOC AlphaHelix PRO 3 B PHE 10 B 3QWS
LOC AlphaHelix VAL 13 B VAL 20 B 3QWS
LOC AlphaHelix PRO 24 B ALA 33 B 3QWS
LOC AlphaHelix PRO 38 B THR 48 B 3QWS
LOC AlphaHelix ASP 55 B MET 61 B 3QWS
LOC TurnI' THR 48 A LYS 51 A 3QWS
LOC TurnVIII TYR 50 A LYS 53 A 3QWS
LOC TurnI' THR 48 B LYS 51 B 3QWS
LOC TurnVIII TYR 50 B LYS 53 B 3QWS
REM 3QWS
REM --------------- Detailed secondary structure assignment------------- 3QWS
REM 3QWS
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3QWS
ASG MET A 1 1 C Coil 360.00 148.63 5.4 3QWS
ASG LYS A 2 2 C Coil -85.24 156.82 104.6 3QWS
ASG PRO A 3 3 H AlphaHelix -55.89 -37.07 5.2 3QWS
ASG GLU A 4 4 H AlphaHelix -65.11 -35.41 121.4 3QWS
ASG GLU A 5 5 H AlphaHelix -68.59 -37.99 81.2 3QWS
ASG LEU A 6 6 H AlphaHelix -59.05 -50.59 0.0 3QWS
ASG VAL A 7 7 H AlphaHelix -68.01 -40.09 25.3 3QWS
ASG ARG A 8 8 H AlphaHelix -60.60 -38.10 159.1 3QWS
ASG HIS A 9 9 H AlphaHelix -62.05 -48.65 79.2 3QWS
ASG PHE A 10 10 H AlphaHelix -88.18 -19.42 57.4 3QWS
ASG GLY A 11 11 C Coil 118.78 -46.25 51.7 3QWS
ASG ASP A 12 12 C Coil -156.59 177.11 68.8 3QWS
ASG VAL A 13 13 H AlphaHelix -60.20 -45.93 16.7 3QWS
ASG GLU A 14 14 H AlphaHelix -58.00 -47.70 106.3 3QWS
ASG LYS A 15 15 H AlphaHelix -67.55 -33.85 119.2 3QWS
ASG ALA A 16 16 H AlphaHelix -63.67 -48.52 0.0 3QWS
ASG ALA A 17 17 H AlphaHelix -57.19 -53.18 0.4 3QWS
ASG VAL A 18 18 H AlphaHelix -57.37 -43.40 104.0 3QWS
ASG GLY A 19 19 H AlphaHelix -62.30 -29.49 32.3 3QWS
ASG VAL A 20 20 H AlphaHelix -112.02 -1.68 5.1 3QWS
ASG GLY A 21 21 C Coil 85.01 35.56 65.0 3QWS
ASG VAL A 22 22 C Coil -130.73 174.33 27.6 3QWS
ASG THR A 23 23 C Coil -82.28 156.97 96.3 3QWS
ASG PRO A 24 24 H AlphaHelix -54.65 -38.01 47.5 3QWS
ASG GLY A 25 25 H AlphaHelix -54.04 -34.95 34.7 3QWS
ASG ALA A 26 26 H AlphaHelix -64.84 -41.97 17.2 3QWS
ASG VAL A 27 27 H AlphaHelix -68.64 -39.67 0.0 3QWS
ASG TYR A 28 28 H AlphaHelix -61.77 -37.13 137.2 3QWS
ASG GLN A 29 29 H AlphaHelix -59.13 -46.53 129.9 3QWS
ASG TRP A 30 30 H AlphaHelix -63.12 -44.11 17.2 3QWS
ASG LEU A 31 31 H AlphaHelix -60.08 -44.70 62.7 3QWS
ASG GLN A 32 32 H AlphaHelix -72.44 -35.34 182.8 3QWS
ASG ALA A 33 33 H AlphaHelix -73.17 -17.60 64.1 3QWS
ASG GLY A 34 34 C Coil 74.99 5.82 35.4 3QWS
ASG GLU A 35 35 C Coil -152.54 148.48 123.6 3QWS
ASG ILE A 36 36 C Coil -95.38 135.74 1.9 3QWS
ASG PRO A 37 37 C Coil -59.66 151.60 60.6 3QWS
ASG PRO A 38 38 H AlphaHelix -60.09 -49.61 80.1 3QWS
ASG LEU A 39 39 H AlphaHelix -63.30 -36.74 49.0 3QWS
ASG ARG A 40 40 H AlphaHelix -61.74 -43.63 55.4 3QWS
ASG GLN A 41 41 H AlphaHelix -55.91 -46.90 12.8 3QWS
ASG SER A 42 42 H AlphaHelix -59.18 -42.66 0.4 3QWS
ASG ASP A 43 43 H AlphaHelix -64.49 -37.86 3.8 3QWS
ASG ILE A 44 44 H AlphaHelix -67.02 -43.68 0.2 3QWS
ASG GLU A 45 45 H AlphaHelix -57.72 -50.60 0.0 3QWS
ASG VAL A 46 46 H AlphaHelix -60.36 -48.12 0.0 3QWS
ASG ARG A 47 47 H AlphaHelix -73.71 -18.56 92.2 3QWS
ASG THR A 48 48 H AlphaHelix -95.74 14.85 9.4 3QWS
ASG ALA A 49 49 T Turn 59.61 37.19 31.8 3QWS
ASG TYR A 50 50 T Turn 71.35 9.72 46.2 3QWS
ASG LYS A 51 51 T Turn -65.38 -34.82 149.0 3QWS
ASG LEU A 52 52 T Turn -107.15 132.38 18.7 3QWS
ASG LYS A 53 53 T Turn -99.10 130.54 92.3 3QWS
ASG SER A 54 54 C Coil -57.11 158.18 1.8 3QWS
ASG ASP A 55 55 H AlphaHelix -56.24 -44.56 66.9 3QWS
ASG PHE A 56 56 H AlphaHelix -52.09 -50.36 72.2 3QWS
ASG THR A 57 57 H AlphaHelix -66.15 -43.99 1.6 3QWS
ASG SER A 58 58 H AlphaHelix -52.05 -45.43 59.9 3QWS
ASG GLN A 59 59 H AlphaHelix -76.18 -34.03 150.9 3QWS
ASG ARG A 60 60 H AlphaHelix -61.22 -41.58 101.7 3QWS
ASG MET A 61 61 H AlphaHelix -72.97 -35.19 133.3 3QWS
ASG GLY A 62 62 C Coil -63.86 360.00 90.0 3QWS
ASG MET B 1 1 C Coil 360.00 153.20 4.9 3QWS
ASG LYS B 2 2 C Coil -87.26 153.52 98.4 3QWS
ASG PRO B 3 3 H AlphaHelix -57.76 -41.36 3.4 3QWS
ASG GLU B 4 4 H AlphaHelix -60.32 -36.23 89.7 3QWS
ASG GLU B 5 5 H AlphaHelix -65.62 -40.26 80.2 3QWS
ASG LEU B 6 6 H AlphaHelix -59.06 -41.62 0.0 3QWS
ASG VAL B 7 7 H AlphaHelix -72.49 -40.87 14.0 3QWS
ASG ARG B 8 8 H AlphaHelix -57.63 -40.39 166.3 3QWS
ASG HIS B 9 9 H AlphaHelix -66.24 -42.84 79.5 3QWS
ASG PHE B 10 10 H AlphaHelix -92.40 -21.50 57.1 3QWS
ASG GLY B 11 11 C Coil 122.59 -45.84 52.5 3QWS
ASG ASP B 12 12 C Coil -154.99 -173.86 64.4 3QWS
ASG VAL B 13 13 H AlphaHelix -66.26 -44.75 16.8 3QWS
ASG GLU B 14 14 H AlphaHelix -61.90 -41.71 108.2 3QWS
ASG LYS B 15 15 H AlphaHelix -70.05 -31.74 116.4 3QWS
ASG ALA B 16 16 H AlphaHelix -68.81 -44.66 0.0 3QWS
ASG ALA B 17 17 H AlphaHelix -61.95 -41.71 0.6 3QWS
ASG VAL B 18 18 H AlphaHelix -66.52 -40.55 105.6 3QWS
ASG GLY B 19 19 H AlphaHelix -66.05 -25.97 29.8 3QWS
ASG VAL B 20 20 H AlphaHelix -113.81 -7.18 6.5 3QWS
ASG GLY B 21 21 C Coil 90.00 34.38 65.6 3QWS
ASG VAL B 22 22 C Coil -127.84 178.03 29.3 3QWS
ASG THR B 23 23 C Coil -87.75 156.61 94.9 3QWS
ASG PRO B 24 24 H AlphaHelix -52.48 -34.87 37.9 3QWS
ASG GLY B 25 25 H AlphaHelix -58.23 -38.66 34.5 3QWS
ASG ALA B 26 26 H AlphaHelix -59.63 -46.83 17.5 3QWS
ASG VAL B 27 27 H AlphaHelix -64.22 -36.50 0.0 3QWS
ASG TYR B 28 28 H AlphaHelix -66.21 -36.49 116.1 3QWS
ASG GLN B 29 29 H AlphaHelix -63.61 -39.39 131.6 3QWS
ASG TRP B 30 30 H AlphaHelix -66.90 -46.20 17.6 3QWS
ASG LEU B 31 31 H AlphaHelix -57.78 -46.54 49.4 3QWS
ASG GLN B 32 32 H AlphaHelix -66.91 -34.23 175.6 3QWS
ASG ALA B 33 33 H AlphaHelix -77.66 -18.07 71.5 3QWS
ASG GLY B 34 34 C Coil 68.30 30.95 39.5 3QWS
ASG GLU B 35 35 C Coil -169.54 130.27 129.3 3QWS
ASG ILE B 36 36 C Coil -96.79 131.02 1.6 3QWS
ASG PRO B 37 37 C Coil -57.89 153.51 58.8 3QWS
ASG PRO B 38 38 H AlphaHelix -65.92 -43.82 82.0 3QWS
ASG LEU B 39 39 H AlphaHelix -64.18 -36.19 51.2 3QWS
ASG ARG B 40 40 H AlphaHelix -62.57 -46.03 58.6 3QWS
ASG GLN B 41 41 H AlphaHelix -54.25 -42.29 12.6 3QWS
ASG SER B 42 42 H AlphaHelix -64.49 -41.94 0.4 3QWS
ASG ASP B 43 43 H AlphaHelix -66.38 -38.88 4.0 3QWS
ASG ILE B 44 44 H AlphaHelix -66.25 -43.18 0.2 3QWS
ASG GLU B 45 45 H AlphaHelix -58.11 -47.18 0.0 3QWS
ASG VAL B 46 46 H AlphaHelix -63.59 -51.18 0.0 3QWS
ASG ARG B 47 47 H AlphaHelix -71.57 -21.61 86.6 3QWS
ASG THR B 48 48 H AlphaHelix -94.32 17.42 8.8 3QWS
ASG ALA B 49 49 T Turn 52.85 44.09 28.8 3QWS
ASG TYR B 50 50 T Turn 62.08 17.79 50.7 3QWS
ASG LYS B 51 51 T Turn -71.21 -35.39 145.9 3QWS
ASG LEU B 52 52 T Turn -103.32 137.86 16.7 3QWS
ASG LYS B 53 53 T Turn -114.55 134.96 85.3 3QWS
ASG SER B 54 54 C Coil -64.69 159.26 1.4 3QWS
ASG ASP B 55 55 H AlphaHelix -59.66 -36.33 51.8 3QWS
ASG PHE B 56 56 H AlphaHelix -56.09 -43.16 67.6 3QWS
ASG THR B 57 57 H AlphaHelix -76.54 -41.16 1.8 3QWS
ASG SER B 58 58 H AlphaHelix -57.23 -50.45 42.9 3QWS
ASG GLN B 59 59 H AlphaHelix -59.18 -45.66 152.6 3QWS
ASG ARG B 60 60 H AlphaHelix -59.49 -37.08 103.1 3QWS
ASG MET B 61 61 H AlphaHelix -82.74 6.63 133.7 3QWS
ASG GLY B 62 62 C Coil 82.69 47.57 61.1 3QWS
ASG LYS B 63 63 C Coil 66.54 360.00 206.9 3QWS