Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/3iz4.std.txt Дата изменения: Tue Jan 18 09:04:42 2011 Дата индексирования: Fri Feb 11 21:35:16 2011 Кодировка:

REM -------------------------------------------------------------------- 3IZ4
REM 3IZ4
REM STRIDE: Knowledge-based secondary structure assignment 3IZ4
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3IZ4
REM 3IZ4
REM Residue accessible surface area calculation 3IZ4
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3IZ4
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3IZ4
REM 3IZ4
REM ------------------------ General information ----------------------- 3IZ4
REM 3IZ4
HDR RNA BINDING PROTEIN/RNA 21-SEP-10 3IZ4 3IZ4
CMP MOL_ID: 1; 3IZ4
CMP MOLECULE: MODIFIED E. COLI TRANSFER-MESSENGER RNA; 3IZ4
CMP CHAIN: A; 3IZ4
CMP ENGINEERED: YES; 3IZ4
CMP MOL_ID: 2; 3IZ4
CMP MOLECULE: SSRA-BINDING PROTEIN; 3IZ4
CMP CHAIN: B; 3IZ4
CMP ENGINEERED: YES 3IZ4
SRC MOL_ID: 1; 3IZ4
SRC ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; 3IZ4
SRC ORGANISM_TAXID: 562; 3IZ4
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3IZ4
SRC EXPRESSION_SYSTEM_TAXID: 562; 3IZ4
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3IZ4
SRC MOL_ID: 2; 3IZ4
SRC ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; 3IZ4
SRC ORGANISM_TAXID: 562; 3IZ4
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3IZ4
SRC EXPRESSION_SYSTEM_TAXID: 562 3IZ4
AUT Y.HASHEM,J.FU,J.FRANK 3IZ4
REM 3IZ4
REM -------------------- Secondary structure summary ------------------- 3IZ4
REM 3IZ4
CHN /data/npidb/pdb/pdb_new/all/pdb3iz4.pdb B 3IZ4
REM 3IZ4
REM . . . . . 3IZ4
SEQ 1 APVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDG 50 3IZ4
STR EETTTTTTTT EEEEEEEEEE HHHHHHHHHTTEETTTTEEEEETT 3IZ4
REM 3IZ4
REM . . . . . 3IZ4
SEQ 51 ELYLENLYIAPYYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKI 100 3IZ4
STR EEEEEE EE TTTTTTT EEEE HHHHHHHHHHHHTTT EEEEEEE 3IZ4
REM 3IZ4
REM . 3IZ4
SEQ 101 YFNERGYAKVLLGLARGK 118 3IZ4
STR EETTTT EEEEEEEE 3IZ4
REM 3IZ4
REM 3IZ4
REM 3IZ4
LOC AlphaHelix GLY 28 B ALA 36 B 3IZ4
LOC AlphaHelix LYS 83 B GLU 94 B 3IZ4
LOC Strand LEU 5 B GLU 6 B 3IZ4
LOC Strand ILE 16 B ALA 25 B 3IZ4
LOC Strand VAL 39 B ASP 40 B 3IZ4
LOC Strand PHE 45 B GLU 49 B 3IZ4
LOC Strand GLU 52 B ASN 57 B 3IZ4
LOC Strand TYR 59 B ILE 60 B 3IZ4
LOC Strand ARG 77 B LEU 80 B 3IZ4
LOC Strand THR 99 B PHE 107 B 3IZ4
LOC Strand ALA 113 B ALA 120 B 3IZ4
LOC TurnI ASN 7 B ALA 10 B 3IZ4
LOC TurnI ARG 9 B HIS 12 B 3IZ4
LOC TurnIV ARG 11 B TYR 14 B 3IZ4
LOC TurnII PHE 41 B SER 44 B 3IZ4
LOC TurnIV PHE 48 B GLY 51 B 3IZ4
LOC TurnI' GLU 49 B GLU 52 B 3IZ4
LOC TurnI ASP 72 B ARG 75 B 3IZ4
LOC TurnIV GLU 94 B GLY 97 B 3IZ4
LOC TurnI ASN 108 B GLY 111 B 3IZ4
LOC GammaInv GLY 37 B VAL 39 B 3IZ4
LOC GammaInv ALA 69 B VAL 71 B 3IZ4
REM 3IZ4
REM --------------- Detailed secondary structure assignment------------- 3IZ4
REM 3IZ4
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3IZ4
ASG ALA B 2 1 C Coil 360.00 165.14 80.1 3IZ4
ASG PRO B 3 2 C Coil -60.94 159.82 46.4 3IZ4
ASG VAL B 4 3 C Coil -127.18 130.29 87.5 3IZ4
ASG LEU B 5 4 E Strand -126.89 125.49 47.3 3IZ4
ASG GLU B 6 5 E Strand -88.20 169.32 102.0 3IZ4
ASG ASN B 7 6 T Turn -109.91 134.61 37.5 3IZ4
ASG ARG B 8 7 T Turn -60.23 -41.53 188.0 3IZ4
ASG ARG B 9 8 T Turn -96.34 11.62 100.0 3IZ4
ASG ALA B 10 9 T Turn -56.95 -36.87 20.0 3IZ4
ASG ARG B 11 10 T Turn -118.13 31.85 248.2 3IZ4
ASG HIS B 12 11 T Turn -104.24 -81.18 153.2 3IZ4
ASG ASP B 13 12 T Turn -106.58 20.14 69.8 3IZ4
ASG TYR B 14 13 T Turn -123.53 131.60 34.7 3IZ4
ASG GLU B 15 14 C Coil -122.06 136.95 98.7 3IZ4
ASG ILE B 16 15 E Strand -113.44 117.30 51.2 3IZ4
ASG LEU B 17 16 E Strand -80.07 -43.18 93.0 3IZ4
ASG GLU B 18 17 E Strand -149.76 146.06 70.4 3IZ4
ASG THR B 19 18 E Strand -128.70 145.32 87.6 3IZ4
ASG TYR B 20 19 E Strand -139.28 161.61 38.4 3IZ4
ASG GLU B 21 20 E Strand -122.81 139.99 87.7 3IZ4
ASG ALA B 22 21 E Strand -129.36 137.87 1.5 3IZ4
ASG GLY B 23 22 E Strand -69.42 155.93 23.1 3IZ4
ASG ILE B 24 23 E Strand -118.58 149.61 31.1 3IZ4
ASG ALA B 25 24 E Strand -108.68 113.06 35.5 3IZ4
ASG LEU B 26 25 C Coil -101.68 -113.54 34.3 3IZ4
ASG LYS B 27 26 C Coil -152.54 147.62 74.8 3IZ4
ASG GLY B 28 27 H AlphaHelix -64.61 -27.93 22.6 3IZ4
ASG THR B 29 28 H AlphaHelix -57.39 -44.04 51.3 3IZ4
ASG GLU B 30 29 H AlphaHelix -64.13 -37.93 14.8 3IZ4
ASG VAL B 31 30 H AlphaHelix -59.92 -39.42 5.0 3IZ4
ASG LYS B 32 31 H AlphaHelix -60.72 -43.71 115.4 3IZ4
ASG SER B 33 32 H AlphaHelix -63.08 -40.48 3.0 3IZ4
ASG LEU B 34 33 H AlphaHelix -67.99 -32.23 10.2 3IZ4
ASG ARG B 35 34 H AlphaHelix -59.75 -41.92 107.1 3IZ4
ASG ALA B 36 35 H AlphaHelix -64.20 -44.45 80.3 3IZ4
ASG GLY B 37 36 T Turn 116.87 18.58 27.5 3IZ4
ASG LYS B 38 37 T Turn -78.08 72.91 110.7 3IZ4
ASG VAL B 39 38 E Strand -135.46 162.82 33.9 3IZ4
ASG ASP B 40 39 E Strand -144.30 142.56 85.1 3IZ4
ASG PHE B 41 40 T Turn -118.28 9.36 16.9 3IZ4
ASG THR B 42 41 T Turn -60.85 113.40 104.4 3IZ4
ASG GLY B 43 42 T Turn 78.19 17.00 52.8 3IZ4
ASG SER B 44 43 T Turn -58.00 145.43 13.9 3IZ4
ASG PHE B 45 44 E Strand -159.47 166.72 78.6 3IZ4
ASG ALA B 46 45 E Strand -138.22 154.82 17.5 3IZ4
ASG ARG B 47 46 E Strand -140.35 164.00 141.6 3IZ4
ASG PHE B 48 47 E Strand -93.12 123.46 84.8 3IZ4
ASG GLU B 49 48 E Strand -137.54 124.30 84.0 3IZ4
ASG ASP B 50 49 T Turn 38.90 49.55 173.5 3IZ4
ASG GLY B 51 50 T Turn 83.42 5.14 36.1 3IZ4
ASG GLU B 52 51 E Strand -129.70 168.21 44.3 3IZ4
ASG LEU B 53 52 E Strand -114.55 124.77 3.2 3IZ4
ASG TYR B 54 53 E Strand -120.86 128.74 55.7 3IZ4
ASG LEU B 55 54 E Strand -85.55 100.16 10.8 3IZ4
ASG GLU B 56 55 E Strand -69.71 -42.51 70.6 3IZ4
ASG ASN B 57 56 E Strand -125.02 124.33 66.2 3IZ4
ASG LEU B 58 57 C Coil 171.72 131.44 27.5 3IZ4
ASG TYR B 59 58 E Strand -119.91 133.84 75.9 3IZ4
ASG ILE B 60 59 E Strand -125.10 128.60 2.8 3IZ4
ASG ALA B 61 60 C Coil -88.29 154.67 31.2 3IZ4
ASG PRO B 62 61 C Coil -53.13 163.98 84.1 3IZ4
ASG TYR B 63 62 C Coil -55.32 360.00 225.1 3IZ4
ASG TYR B 68 63 C Coil 360.00 -176.57 215.0 3IZ4
ASG ALA B 69 64 T Turn -157.11 177.58 74.5 3IZ4
ASG ASN B 70 65 T Turn -65.02 79.60 177.0 3IZ4
ASG VAL B 71 66 T Turn -104.64 117.36 63.0 3IZ4
ASG ASP B 72 67 T Turn -68.34 123.90 85.5 3IZ4
ASG PRO B 73 68 T Turn -96.18 -5.07 22.6 3IZ4
ASG ARG B 74 69 T Turn -97.61 2.33 187.4 3IZ4
ASG ARG B 75 70 T Turn -95.52 150.03 186.3 3IZ4
ASG LYS B 76 71 C Coil -60.50 149.54 62.3 3IZ4
ASG ARG B 77 72 E Strand -122.68 146.61 19.6 3IZ4
ASG LYS B 78 73 E Strand -85.35 150.15 74.1 3IZ4
ASG LEU B 79 74 E Strand -120.19 129.13 1.2 3IZ4
ASG LEU B 80 75 E Strand -103.23 129.78 77.3 3IZ4
ASG LEU B 81 76 C Coil -158.11 155.35 24.4 3IZ4
ASG HIS B 82 77 C Coil -59.66 140.59 106.4 3IZ4
ASG LYS B 83 78 H AlphaHelix -55.54 -44.31 167.5 3IZ4
ASG HIS B 84 79 H AlphaHelix -73.26 -55.27 155.7 3IZ4
ASG GLU B 85 80 H AlphaHelix -67.49 -41.04 80.6 3IZ4
ASG LEU B 86 81 H AlphaHelix -63.90 -43.79 8.8 3IZ4
ASG ARG B 87 82 H AlphaHelix -80.38 -18.19 146.6 3IZ4
ASG ARG B 88 83 H AlphaHelix -77.10 -42.46 151.6 3IZ4
ASG LEU B 89 84 H AlphaHelix -69.08 -20.06 4.8 3IZ4
ASG LEU B 90 85 H AlphaHelix -60.28 -31.42 71.4 3IZ4
ASG GLY B 91 86 H AlphaHelix -75.97 -11.88 26.2 3IZ4
ASG LYS B 92 87 H AlphaHelix -72.74 -40.73 47.2 3IZ4
ASG VAL B 93 88 H AlphaHelix -77.97 -16.82 36.2 3IZ4
ASG GLU B 94 89 H AlphaHelix -57.65 -26.39 152.2 3IZ4
ASG GLN B 95 90 T Turn -78.84 46.40 149.2 3IZ4
ASG LYS B 96 91 T Turn 76.14 38.69 198.2 3IZ4
ASG GLY B 97 92 T Turn 91.81 123.89 55.8 3IZ4
ASG LEU B 98 93 C Coil -143.64 138.00 34.7 3IZ4
ASG THR B 99 94 E Strand -87.80 141.08 50.6 3IZ4
ASG LEU B 100 95 E Strand -92.02 111.33 35.8 3IZ4
ASG VAL B 101 96 E Strand -113.25 134.94 15.3 3IZ4
ASG PRO B 102 97 E Strand -86.33 108.78 7.4 3IZ4
ASG LEU B 103 98 E Strand -76.91 -43.81 25.6 3IZ4
ASG LYS B 104 99 E Strand -153.96 154.06 78.0 3IZ4
ASG ILE B 105 100 E Strand -113.78 135.14 15.3 3IZ4
ASG TYR B 106 101 E Strand -154.28 162.44 33.8 3IZ4
ASG PHE B 107 102 E Strand -115.34 135.06 34.2 3IZ4
ASG ASN B 108 103 T Turn -72.22 176.71 70.0 3IZ4
ASG GLU B 109 104 T Turn -69.86 -15.69 210.3 3IZ4
ASG ARG B 110 105 T Turn -88.13 -14.76 213.9 3IZ4
ASG GLY B 111 106 T Turn 91.55 35.09 11.9 3IZ4
ASG TYR B 112 107 C Coil -118.93 166.36 118.3 3IZ4
ASG ALA B 113 108 E Strand -98.56 148.43 14.2 3IZ4
ASG LYS B 114 109 E Strand -137.51 160.39 60.3 3IZ4
ASG VAL B 115 110 E Strand -124.64 139.19 1.8 3IZ4
ASG LEU B 116 111 E Strand -92.75 123.96 42.3 3IZ4
ASG LEU B 117 112 E Strand -117.18 132.18 4.2 3IZ4
ASG GLY B 118 113 E Strand -119.02 144.10 0.0 3IZ4
ASG LEU B 119 114 E Strand -87.49 114.43 1.8 3IZ4
ASG ALA B 120 115 E Strand -120.00 152.96 0.8 3IZ4
ASG ARG B 121 116 C Coil -111.69 21.55 123.7 3IZ4
ASG GLY B 122 117 C Coil -78.00 -173.21 10.1 3IZ4
ASG LYS B 123 118 C Coil -130.72 360.00 196.1 3IZ4