Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/lists/ListOfPfam.txt Дата изменения: Wed Sep 23 16:33:44 2015 Дата индексирования: Mon Apr 11 05:41:52 2016 Кодировка:

[best_representative] [ac] [kind_of_best] [des] [representatives] [pfam_id] [entries] [best_resolution] [domain_file]
"3u61" "AAA" "dna" "ATPase family associated with various cellular activities (AAA)" "3u60,3u61,3u5z" "PF00004.24" "3" "3.20" "3u61.D_46-160.3u61.pdb1.pdb"
"3pih" "ABC_tran" "dna" "ABC transporter" "3j16,3pih,3j5s" "PF00005.22" "3" "2.90" "3pih.B_600-837.3pih.pdb1.pdb"
"3ice" "ATP-synt_ab" "rna" "ATP synthase alpha/beta family, nucleotide-binding domain" "3ice,2ht1" "PF00006.20" "2" "2.80" "3ice.F_157-365.3ice.pdb1.pdb"
"1b23" "GTP_EFTU" "rna" "Elongation factor Tu GTP binding domain" "3fih,1ttt,1s1h,1b23,3v11,1ob5,2wrq,3j36,2xqd,3fic,2y18,2y0u,2y10,2y12,2y0y,2wrn,2y16,2y0w,3qsy,4abr,3izv,3izw,4cxg,3deg,4cxh,2om7,3j5x,1ob2,4d61" "PF00009.22" "29" "2.60" "1b23.P_9-212.1b23.pdb1.pdb"
"1nkp" "HLH" "dna" "Helix-loop-helix DNA-binding domain" "1nkp,1nlw,1a0a,1mdy,2ql2,1hlo,1an4,1am9,2ypa,2ypb,4atk,1an2,4h10,4ati,4zpk,4zpr" "PF00010.21" "16" "1.80" "1nkp.D_502-554.1nkp.pdb2.pdb"
"2p2r" "KH_1" "dna" "KH domain" "2ann,2anr,4wal,3aev,2py9,1ec6,2p2r,1zzj,1ztg,4jvh,2pqu,2axy,1zzi,3vke,4wan,4jvy" "PF00013.24" "16" "1.60" "2p2r.A_289-351.2p2r.pdb1.pdb"
"4oav" "Ank" "rna" "Ankyrin repeat" "4oav" "PF00023.25" "1" "2.10" "4oav.B_91-123.4oav.pdb1.pdb"
"1zrf" "cNMP_binding" "dna" "Cyclic nucleotide-binding domain" "1o3r,1run,1zrf,1j59,1zrc,3iyd,3mzh" "PF00027.24" "7" "2.10" "1zrf.A_20-111.1zrf.pdb1.pdb"
"2nug" "dsrm" "rna" "Double-stranded RNA binding motif" "1rc7,1yyk,1di2,3adl,2nuf,2nue,2ez6,1yz9,1yyw,2nug,1yyo,3adi,3vyx,3vyy,4m30,4m2z" "PF00035.20" "16" "1.70" "2nug.A_152-217.2nug.pdb1.pdb"
"3rkq" "Homeobox" "dna" "Homeobox domain" "3cmy,3l1p,1gt0,3lnq,1b8i,2r5y,1akh,1du0,1ic8,1fjl,1yrn,2r5z,3d1n,1cqt,2h8r,4qtr,4rbo,4cyc,4rdu,4uus,4j19,3rkq,1k61,1hdd,9ant,2h1k,3a01,2hdd,2hot,2hos,1au7,1apl,1mnm,1b72,2d5v,1le8,1oct,1puf,1jgg,3hdd,1hf0,1ig7,2xsd" "PF00046.24" "43" "1.70" "3rkq.A_139-194.3rkq.pdb1.pdb"
"3zh2" "Ldh_1_N" "dna" "lactate/malate dehydrogenase, NAD binding domain" "3zh2" "PF00056.18" "1" "2.10" "3zh2.A_5-149.3zh2.pdb1.pdb"
"4m4o" "Lys" "rna" "C-type lysozyme/alpha-lactalbumin family" "4m6d,4m4o" "PF00062.15" "2" "2.00" "4m4o.A_1-127.4m4o.pdb1.pdb"
"3uzt" "Pkinase" "rna" "Protein kinase domain" "3uzs,3uzt" "PF00069.20" "2" "3.51" "3uzt.A_191-453.3uzt.pdb1.pdb"
"3a6p" "Ras" "rna" "Ras family" "3a6p,3icq" "PF00071.17" "2" "2.92" "3a6p.C_12-170.3a6p.pdb1.pdb"
"1f0v" "RnaseA" "dna" "Pancreatic ribonuclease" "1f0v,1oj8,1rcn,1rbj,1rta,2i5s,1m07" "PF00074.15" "7" "1.70" "1f0v.B_201-321.1f0v.pdb2.pdb"
"4htu" "RNase_H" "dna" "RNase H" "4r5p,4puo,4pwd,4q0b,4pqu,3v4i,3kle,1t03,1rtd,3klg,3klf,1zbl,2qk9,2hmi,1j5o,3kk3,3i8d,3v6d,1hys,1hvu,1n5y,3jyt,3kk2,3jsm,3twh,3klh,4h8k,4b3p,2g8i,2g8h,2g8v,2g8w,4hug,1n6q,3v81,3d0p,2g8k,2qkk,3ey1,1zbi,2qkb,1t05,2g8u,4b3q,3kjv,4huf,3kk1,2r7y,1r0a,2g8f,4htu,4b3o,4hue,3uld" "PF00075.19" "54" "1.49" "4htu.A_70-177.4htu.pdb1.pdb"
"2xs2" "RRM_1" "rna" "RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)" "3egz,4ed5,3ud4,3g8s,3g96,3ucu,2nz4,3vam,3nna,3g9c,3vah,4f02,2g4b,1b7f,1drz,3ud3,1cvj,1cx0,2xs2,2xs7,1zh5,3r1h,4yoe,5det,4uer,4qqb,3nmr,3p49,4w90,4w92,3l3c,4pr6,3nnc,4lmz,4tu8,3nnh,4tu9,4wkr,2xs5,3k0j,3muv,1u1o,1u1k,4pkd,1po6,3hhn,2qfj,2x1a,1m5p,3iwn,1u1q,3mur,1u1p,2von,1m5v,1u1n,1g2e,1m5o,1m5k,4c4w,4n0t,4iuf,3vag,1yty,1u1r,2vod,3vaj,2x1f,3cun,3mut,2vop,1urn,3cul,1pgz,2xnr,3mxh,1u1m,3r1l,2voo,3g8t,3ucz,2up1,1fxl,1u1l,3irw,3mum" "PF00076.17" "86" "1.35" "2xs2.A_42-109.2xs2.pdb1.pdb"
"4xpc" "RVT_1" "dna" "Reverse transcriptase (RNA-dependent DNA polymerase)" "3klf,3kle,3v81,4b3p,1qai,4b3o,1n4l,2r2r,2r2u,2fjw,2fvs,2fvr,2r2t,2fvp,2fjv,2r2s,2fvq,2fjx,3jsm,1t03,1ztt,3klg,1ztw,1d1u,1hys,1j5o,4ol8,3v6d,1i6j,3kk3,3jyt,1rtd,3kk2,1t05,3kyl,1n5y,3v4i,1n6q,2hmi,4m95,3klh,4m94,4hkq,4puo,4r5p,4xpc,4pqu,4pwd,4q0b,1d0e,4b3q,4xpe,1qaj,1r0a,4xo0,3kk1,3kjv" "PF00078.22" "57" "1.68" "4xpc.A_93-273.4xpc.pdb1.pdb"
"1t8e" "Thioredoxin" "dna" "Thioredoxin" "1t8e,2ajq" "PF00085.15" "2" "2.54" "1t8e.B_3-106.1t8e.pdb1.pdb"
"4lz1" "Trypsin" "dna" "Trypsin" "4dii,1hao,3dd2,4dih,1hut,3qlp,1hap,4lz1,4lz4,4i7y" "PF00089.21" "10" "1.65" "4lz1.H_16-238.4lz1.pdb1.pdb"
"3hxo" "VWA" "dna" "von Willebrand factor type A domain" "3hxq,3hxo" "PF00092.23" "2" "2.40" "3hxo.A_514-691.3hxo.pdb1.pdb"
"4m9v" "zf-C2H2" "dna" "Zinc finger, C2H2 type" "1un6,1tf6,2gli,4m9v,4gzn" "PF00096.21" "5" "0.97" "4m9v.F_139-161.4m9v.pdb2.pdb"
"3ts2" "zf-CCHC" "rna" "Zinc knuckle" "3trz,3ts0,3ts2" "PF00098.18" "3" "2.01" "3ts2.B_137-154.3ts2.pdb1.pdb"
"3g9m" "zf-C4" "dna" "Zinc finger, C4 type (two domains)" "3e00,3fyl,4hn5,3dzu,1hcq,3g6r,3dzy,2a66,1kb4,1a6y,3g9m,1dsz,2han,3g6q,2c7a,3g8x,1r0o,1r4r,3g99,1ga5,1glu,3g9o,1kb2,3m9e,1r4i,4hn6,3g8u,3cbb,3g6p,3g9i,2nll,1hlz,3g6u,3g97,1by4,3g9p,3g6t,1kb6,1r0n,3g9j,4cn2,4oor,4cn3,4cn5,4oln,4tnt,4ov7,4ond,4nqa,4umm,4iqr,4cn7,1ynw,4aa6,1cit,1lat,1r4o" "PF00105.13" "57" "1.61" "3g9m.B_438-507.3g9m.pdb1.pdb"
"1kx5" "Histone" "dna" "Core histone H2A/H2B/H3/H4" "4inm,4j8v,3azm,3azj,3azk,3lz0,3azn,4j8w,3ayw,4kgc,3av1,3aze,3azi,4jjn,3azf,4j8u,4kud,3mgs,3lz1,3mvd,4j8x,3lel,4ld9,3azl,3o62,3a6n,3an2,3afa,3azh,3reh,3mnn,3mgq,4qlc,3x1t,3x1s,3x1v,4wu8,3azg,3av2,1aoi,3rek,1m1a,1eqz,3lja,2nqb,1p3k,2pyo,1p3l,1p3i,2nzd,3rel,1p3m,1p3f,1p3g,1id3,2cv5,2f8n,1kx3,1zla,1kx4,1kx5,1u35,1p3o,2fj7,1p3p,1f66,4wu9,1s32,3tu4,3rei,3b6f,3kxb,3kwq,1m19,3kuy,3rej,1p34,3b6g,1p3a,3c1c,3c1b,1p3b,3wtp,3x1u,4r8p,3wa9,3mgr,3waa,3utb,3ut9,3wkj,3w96,4x23,3mgp,3w98,3w97,3w99,1m18,3uta" "PF00125.19" "99" "1.94" "1kx5.H_28-98.1kx5.pdb1.pdb"
"4iht" "HTH_1" "dna" "Bacterial regulatory helix-turn-helix protein, lysR family" "4ihs,4iht" "PF00126.22" "2" "3.00" "4iht.A_3-62.4iht.pdb1.pdb"
"4arc" "tRNA-synt_1" "rna" "tRNA synthetases class I (I, L, M and V)" "3zjv,3zgz,4arc,3zju,4aq7,4cqn,4ari,1wz2,1gax,1ivs,2bte,2byt,1qu3,4as1,3zjt,1ffy,1qu2" "PF00133.17" "17" "2.00" "4arc.A_608-659.4arc.pdb1.pdb"
"2w2h" "Cyclin_N" "rna" "Cyclin, N-terminal domain" "2w2h" "PF00134.18" "1" "3.25" "2w2h.B_9-149.2w2h.pdb2.pdb"
"3qex" "DNA_pol_B" "dna" "DNA polymerase family B" "2dtu,2ozm,4m42,3nae,3k5l,3ndk,3iay,3lzi,4m3x,4fjj,3k5n,4dto,3ne6,4flu,3suo,4khn,1ig9,4dtm,3lds,3l8b,3k59,4flx,4fj8,3ngi,3uiq,4khu,3nhg,4flv,4fj9,4ptf,4du3,4du4,3qno,4dtr,4i9q,4fj7,4fjh,3nci,4flt,4fji,4fk4,4fjn,4dtx,4fjx,4e3s,4fj5,4fjg,4du1,4fjl,4ki4,4khq,4m8o,4k8z,4m3u,4m3y,4fyd,4m41,4m3w,2p5o,4fk2,4j2d,4m3r,4khw,4k8x,4m45,4khs,4khy,4fxd,4ki6,4m3t,4m3z,3qer,3tag,4j2a,3qep,4fly,3spz,3sq2,2dy4,3sq0,3rmc,3qes,3tab,3qet,3qei,3qev,3qex,4flz,3si6,4dtj,2vwj,4dtp,4fjm,3spy,3sjj,3sup,4flw,4dtu,4fm1,4dtn,3rmd,3tae,3suq,3sq4,3cq8,3taf,3qew,4fm0,4ail,3s9h,4fjk,3sq1,3scx,4fm2,3rma,3rmb,3qnn,3lzj,4dts,3snn,1q9x,3sun,3kd5,4j2b,4q5v,3kd1,4qcl,4j2e,2xhb,2p5g,3k5m,3cfp,3k57,3rwu,4fk0,1clq,3maq,3cfr,1q9y,2ozs,2oyq,3k58" "PF00136.16" "142" "1.73" "3qex.A_428-856.3qex.pdb1.pdb"
"4tzd" "Lectin_legB" "dna" "Legume lectin domain" "4tzd" "PF00139.14" "1" "3.20" "4tzd.D_124-237.4tzd.pdb1.pdb"
"3ugo" "Sigma70_r1_2" "dna" "Sigma-70 factor, region 1.2" "4xlp,4xlq,4yln,4gor,4ylp,4oiq,4g7h,3ugp,4g7o,3ugo,4xls,4ylo,4g7z,4q4z,4xlr,4xln,4q5s,4oir,4oip,4oin,4oio,4ki2" "PF00140.15" "22" "2.10" "3ugo.A_93-129.3ugo.pdb1.pdb"
"2c7p" "DNA_methylase" "dna" "C-5 cytosine-specific DNA methylase" "1fjx,10mh,1mht,1m0e,4dkj,3ubt,2uz4,6mht,2z6u,9mht,3eeo,2z6a,4da4,4mht,2uyc,1skm,2zcj,2c7q,2c7o,2c7r,2c7p,3mht,2z6q,3pt6,7mht,3pta,1dct,8mht,2uyh,5mht,2hr1,2i9k" "PF00145.12" "32" "1.70" "2c7p.A_12-320.2c7p.pdb1.pdb"
"4pei" "Metallophos" "rna" "Calcineurin-like phosphoesterase" "3dsc,3dsd,4tug,4pei,4tui,4peh" "PF00149.23" "6" "1.95" "4pei.A_7-234.4pei.pdb1.pdb"
"1c0a" "tRNA-synt_2" "rna" "tRNA synthetases class II (D, K and N) " "1asy,1il2,3kfu,1efw,1asz,1c0a" "PF00152.15" "6" "2.40" "1c0a.A_117-559.1c0a.pdb1.pdb"
"3cmw" "RecA" "dna" "recA bacterial DNA recombination protein" "3cmt,3cmw,3cmu,3cmx" "PF00154.16" "4" "2.80" "3cmw.A_37-329.3cmw.pdb1.pdb"
"1e3o" "Pou" "dna" "Pou domain - N-terminal to homeobox domain" "3d1n,1au7,1oct,3l1p,1e3o,1gt0,1cqt,1hf0,2xsd" "PF00157.12" "9" "1.90" "1e3o.C_1-75.1e3o.pdb1.pdb"
"3rtj" "RIP" "rna" "Ribosome inactivating protein" "3rtj" "PF00161.14" "1" "3.00" "3rtj.A_10-221.3rtj.pdb1.pdb"
"4rb7" "Ribosomal_S4" "rna" "Ribosomal protein S4/S9 N-terminal domain" "2uxc,3j0z,3kis,3i9b,3i9d,3tvg,3e1c,2uua,2qoy,3i8h,2uu9,3knn,2qan,3knh,1j5e,1i94,2qb9,3izv,3uxs,2qbb,3f1e,2qal,4gd1,4bpe,1ibm,2zm6,1ibl,1ibk,2z4m,3knj,3j5x,4nvu,2qbj,3kiu,2z4k,3uz3,2qou,4dhb,2gyb,1n32,3v2e,2i2p,2i2u,2qbd,3huw,2j02,2qbf,2j00,3tvf,2qbh,1xmq,3i8g,1xnr,1voz,2wrk,1vox,1vov,1vos,1voq,2wrn,3uz6,3i1m,2wrq,4dh9,2hgi,3fic,1xnq,3uzi,3i1o,4k0p,2xzm,2wri,4gkk,1vs7,1vs5,1fjg,2wwl,3uzg,4ji1,3j13,1pnx,1pns,3df3,4bpp,2xg1,3sfs,3fih,2xsy,2xqd,3uz7,2x9r,2x9t,1hr0,3e1a,1hnw,1yl4,3kc4,3uyd,3df1,2wdm,4kja,3bbn,2f4v,2qnh,2uuc,3i1z,3j36,2wh1,2wh3,3i21,2wdh,2xzn,3jyv,2uub,2vhp,4dr2,2wdk,2e5l,1hnz,2vho,1xmo,3j53,3jam,4g5m,2hgr,4g5t,3znd,2v46,2ow8,4lf4,2b9m,3kiq,2vqf,3d5c,3mr8,2hhh,1n34,4uer,3pys,1s1h,2y18,2y16,3kix,3pyq,2wdg,2y10,4ukm,3oaq,2b64,2aw7,4dv7,2y0w,2hgp,3uxt,2vqe,3pyn,4bpn,3f1g,2b9o,2y0u,3j0u,4duy,2y14,3pyu,3d5a,2y0y,2y12,3zn7,3knl,1n36,3uoq,1n33,4dv4,4dv3,3oar,3ofo,4eja,4dr1,4b8f,4kfk,4dv1,4ej9,3ofa,3j0x,4b3m,3uyf,4dv0,3ofb,4dv6,3ofp,4dr7,4gaq,3ohc,3ogy,3oge,4ule,3ohd,3uzm,3ofy,3ofx,4g5k,4g5v,2ykr,4dv2,3uzl,3oto,3i1q,4k0k,3v2c,4gas,3t1y,3ora,3ms0,4dr4,3i1s,3v24,2v48,3huy,2qow,4k0l,4dv5,2xuy,3zvo,4duz,4dr5,2uxd,2qp0,4dr3,3or9,4abr,3izw,3j10,3uz4,4dr6,3v22,3oi2,3v28,3j0v,3j18,3t1h,3oi0,4kj6,3oi4,3ohy,3v26,2avy,4b8h,4gd2,4qcy,4pea,4nxm,4kvb,4kda,3j4y,4ji5,3j55,4kj4,3j5t,4l6k,4adv,3j5j,4w23,3j59,4l6m,3j5n,4rb5,4btc,4ukh,4byb,4b3s,4kiy,1vxs,4ji8,4tp2,4tpc,4tou,4kbv,4lf6,3j57,2xfz,4kzx,4lf9,3j4w,4nvw,4uq4,3j4v,4lfc,4kzy,4kdj,4ji4,4bpo,4w2c,1vvx,3v6v,4kd8,4lf5,4b3r,4b3t,1vy2,3v6u,3j5b,4rb9,4nw0,3j4z,2uxb,4lfb,4ujr,4cxc,4kjc,1vx2,3j5f,4jv5,4ji7,4qs0,4kj8,4w28,4jya,1vxz,3j81,4nxn,4qco,4qcq,4kzz,4byd,1vx5,4cr1,1vw9,4kcy,3j5h,4lfa,4kfh,4khp,4ji6,4ji0,4rb7,4ujk,4a2i,4kx1,4kbt,4gkj,4kj2,4kdg,4ukz,4ul6,4ji2,4juw,1hnx,4kj0,3j00,4ulr,4lf7,4lf8,3j5d,4kd0,1vvp,1vvv,4ukf,1vxp,4aqy,4ujf,4tp0,1vxm,4ukw,5a2q,4ji3,4qcm,1vx8,4rbb,4ul1,4wus,4ton,4tp8,4wao,4tol,4uk6,1vvr,1vxi,4ukp,4qcu,4uju,1vxk,4uk9,4qcs,4qcw,4qjt,4ukr,1vvl,4rbf,1vvn,4ul9,4w2a,4ulm,4d5l,4ujm,4qs2,4uk4,4rbh,4tow,4ulp,4qd0,1vxw,3j7a,4tpa,4ukb,4kwz,4pe9,1vy0,4ujp,4ulb,1vwv,4tp6,4nvy,4yhh,4d61,4ul4,4ox9,4rbd,4rbj,4ukk,4waq,4tp4,1vvz,4ulg,4uku,4tpe,1vvt,3j80,4ujw,4ujz,4wt8,4uq5,4ulj,4ujh" "PF00163.14" "433" "2.40" "4rb7.D_2-98.4rb7.pdb1.pdb"
"4rb7" "Ribosom_S12_S23" "rna" "Ribosomal protein S12/S23" "4tp6,4ox9,4ulm,1vvt,3j80,1vxi,3j7a,4wao,1vvx,4qcu,4w2a,4kwz,4tpa,4d5l,4ul4,1vvn,4ul9,4ukr,4uk9,4rbj,4waq,4ukk,4tp4,4wus,4rbb,4uku,4qjt,1vxk,4ujp,4ton,4d61,4ukp,4ulp,4ukb,4ukw,4yhh,4rbh,1vy0,4qcs,4ujw,4ji3,4qd0,4uq5,4tp0,5a2q,4rbf,4ulb,1vvl,4tpe,4pe9,1vxm,4uju,1vvv,4nvy,1vx8,4tow,4ukf,5aj3,4rbd,4ul1,4ujf,1vvp,4ulg,4qcm,4ujz,4ulj,4wt8,4qcw,4uk6,1vvr,1vxp,4aqy,1vxw,4ujh,4uk4,1vvz,4ujm,4uk1,1vwv,4tol,4tp8,4qs2,4uer,3bbn,3j53,3j13,3j5h,3uz7,2xsy,3f1e,4dv2,3fih,1xmq,3kc4,4kzx,3j0o,4bpp,3uzg,3e1a,3knj,3j0q,3tvf,3j5x,3j0v,4dhb,3j0l,3fic,3knh,4nxn,3uzi,3jyv,3sfs,3j0p,2uxc,4kj6,3uz3,2qnh,3uyd,3tvg,3e1c,3kis,3uzl,3j0z,1n32,3uxs,4bpe,4dh9,3zvo,4gkk,3v2e,2v48,2hgr,3df1,3i9d,3ofa,3ofo,3mr8,2wri,2qoy,1pns,2wrq,1vov,2uxd,3jam,1yl4,2z4m,2j02,2wwl,3ofp,1vox,3oaq,4g5t,3j5j,3ogy,2uu9,3i1o,2e5l,2i2p,4duy,2ykr,4g5m,3oto,1xnq,2xqd,2v46,1xmo,1i94,3df3,2hhh,4lf6,1ibm,3oi0,3izz,3knn,1xnr,2wdg,3uz6,3huw,2zm6,1ibl,2wh3,2x9t,1vs5,2qp0,2qal,2y14,3oi2,3ohc,2vhp,3i1m,1vs7,3d5c,3uxt,3ohd,3ms0,2uub,3kiq,2wh1,2j00,3izv,1voq,1vos,3znd,1n33,1n34,1hnz,2vqf,2b9m,3ora,2qou,3ohy,3i8g,3i8h,2gyb,2ow8,2qbd,4ji6,3j00,3j5t,3j5b,4ji1,4lfa,4lfb,3j6v,4kj4,4l6k,4jya,2uxb,4kjc,4kvb,4cxh,4kdj,4b3m,4gkj,1vx5,3j4y,4byb,4lf9,4khp,3v6u,1vxs,4ji7,4ukm,4ji5,3j55,4byd,4lf7,4ujk,4w23,4ji8,4nxm,3j43,4qcq,1vx2,4ul6,4juw,4kd0,2xfz,4qcy,4lf5,4kzy,4lf8,4w28,4cr1,4kfh,4uq4,4rb5,3j5n,4ji4,4kx1,4kcy,4kj8,4kdg,4b3r,4ji2,4tou,4pea,4b3t,4cxg,4ukh,4a2i,4kj0,4kj2,4ji0,4tp2,4rb7,1hnx,4ukz,1vw9,4kda,4qs0,4b3s,4jv5,4kbt,4tpc,3j5d,4l6m,4ulr,3j81,2om7,3j57,3j5f,4kiy,3j4z,3j4w,3j0d,3v6v,1vxz,4adv,4cxc,4nw0,4kbv,4qco,4btc,3j4v,4ujr,4rb9,4lfc,4nvw,1vy2,1n36,3pyn,2y18,2hgp,2y16,2b9o,1ibk,3d5a,2uuc,3ofb,4gd1,2wrk,2hgi,3ofy,2wdh,2wdk,2vqe,1s1h,2qbb,3f1g,2aw7,3i1z,2y0y,3oi4,2y10,3o2z,3kix,3i9b,3j59,4dv3,4nvu,3i21,3ofx,2gy9,2f4v,2wrn,4dv7,1hr0,1fjg,3v24,3zn7,2qan,2y0w,3o30,3j0u,1j5e,1voz,2i2u,3uoq,2qbh,1pnx,1hnw,2qbf,2vho,2uua,3pys,3kiu,3knl,4dv4,2y0u,2z4k,3pyu,2x9r,2wdm,2y12,2xzn,4dr2,3or9,2qow,2qbj,2b64,3oar,2xzm,3pyq,2qb9,3oge,4kd8,4dr4,4bpo,4kfk,3v2c,4k0l,4abr,3j20,3izw,4dv5,4kja,4gaq,4dv6,4kzz,4w2c,4gd2,3uz4,3j0x,3t1h,4g5v,4gas,4dr7,3j36,4eja,3uzm,4dv0,4b8f,2avy,4dr5,4dv1,3v26,4b8h,3i1s,4lf4,4ule,4k0p,4ej9,4dr3,4duz,3i1q,4bpn,3v28,3v22,4k0k,4dr1,2xg1,3j10,4g5k,3huy,4dr6,3j18,3uyf,2xuy,3t1y" "PF00164.20" "450" "2.40" "4rb7.L_5-126.4rb7.pdb1.pdb"
"1gd2" "bZIP_1" "dna" "bZIP transcription factor" "1gd2,2c9l,1s9k,2c9n,1dh3,1ysa,1jnm,1a02,1t2k,2h7h,1fos,2wt7,2dgc,1dgc" "PF00170.16" "14" "2.00" "1gd2.F_78-140.1gd2.pdb1.pdb"
"3coq" "Zn_clus" "dna" "Fungal Zn(2)-Cys(6) binuclear cluster domain" "1zme,1hwt,2er8,3coq,2ere,2erg,2hap,1qp9,1d66,1pyi" "PF00172.13" "10" "2.40" "3coq.A_9-47.3coq.pdb1.pdb"
"1z63" "SNF2_N" "dna" "SNF2 family N-terminal domain" "1z63" "PF00176.18" "1" "3.00" "1z63.B_447-720.1z63.pdb2.pdb"
"4rb5" "Ribosomal_S7" "rna" "Ribosomal protein S7p/S5e" "4khp,4rb7,4juw,3j4v,3j5h,3j4w,4kcy,4lf9,4byd,4nw0,4kdj,4lfa,4cr1,1vw9,4kjc,4qco,4ji4,4kfh,1vx5,3j5n,3j5f,3j57,3j6v,3j5d,4ji0,4cxc,3j5b,1vx2,3v6v,4lfb,4ji6,4l6m,4ji1,4qcq,4ul6,4rb5,1vxz,4ukh,4kvb,3j59,4btc,4kiy,3j5s,4b3r,4kzy,4gkj,4lf8,4b3s,4kzz,4w28,4jya,3j5t,4kj8,4a2i,4ujr,4lf5,4kzx,4kx1,4lfc,4lf7,3j81,4tp2,4w2c,1vvx,4b3t,4qs0,3j00,1vxs,4kda,4kj4,4kbt,4ji8,1hnx,4tou,4jv5,4ji2,4tpc,3j4y,4kj2,4kdg,4nxm,4uq4,4nvw,4ulr,4kd0,4kj0,4byb,3j43,4ji5,3v6u,4qcy,4rb9,2xfz,4ujk,4ukz,2uxb,4nxn,4adv,3j55,4ji7,3j4z,4l6k,4pea,1vy2,4kbv,2wdk,2y0y,1pnx,2wrk,2qbb,3d5a,3kiu,2y16,3f1g,2qbf,3pyq,3i21,2x9r,2qow,3fic,4dr2,3ofx,1hnw,3or9,2z4k,2y0u,3i9b,2qan,3ofy,2uua,1n36,2b64,4lf6,4nvu,2wrn,3pys,4dv7,1voz,3i1z,2y0w,4k0k,4gd1,3oaq,2hgp,2ykr,2aw7,1fjg,2gy9,3oge,3j0u,2y10,3oi4,2vho,2qbh,2wdm,1j5e,1ibk,2qbj,2y18,2f4v,4ukm,3ofb,2vqe,4bpe,2v48,1hr0,2b9o,4dv3,3knl,2i2u,3uoq,2y14,4dv4,1s1h,3pyu,2uuc,2qb9,3pyn,2hgi,3kix,2y12,2wdg,4bpn,4abr,4kd8,3v24,4b8h,3v22,3i1q,3v26,3j5j,3huy,4k0l,3zvo,4duz,2xuy,4lf4,4dv6,4dr3,3v2c,3t1y,4gas,3j20,4kja,4dr4,2avy,3zn7,3izw,4g5k,4dr5,4dv5,3uz4,3uzm,3knn,4gaq,4ej9,4dr7,3o2z,4ule,4kfk,4dv2,3i1s,3t1h,4eja,3v28,3o30,4gd2,4g5v,3j0x,3uyf,4dv0,3j18,4dv1,4b8f,3oar,4bpo,4dr6,3j10,4k0p,4dr1,4uer,4ulj,5aj3,4ukr,4waq,5a2q,4uk1,4ujw,1vy0,4ukw,4ulg,4tp4,1vxm,4uk9,1vxp,4uq5,4rbb,1vx8,4tp0,4ukk,4qjt,4aqy,1vwv,4kwz,4ul4,4uju,4qs2,4tpa,4uk6,1vvr,4qcu,4uku,4tol,1vvz,4ujp,4rbf,4ukb,1vxk,4ulp,1vvp,4tow,4qcm,4ulm,4ujm,4yhh,4qd0,4qcw,4nvy,1vvt,4tp6,4rbd,4ukp,4ulb,4ujf,4ujh,1vxw,4w2a,4ul1,1vxi,1vvv,1vvl,4pe9,4ox9,3j7a,4d5l,4tp8,4wt8,3j80,4qcs,4uk4,4d61,4ujz,4wao,4ul9,4ji3,4ton,1vvn,4wus,4rbh,4ukf,4tpe,4rbj,1vos,2vhp,3kiq,3ohd,1vs5,2gyb,3ogy,2hgr,4gkk,3uz6,1xmo,3znd,1xnr,1n33,3ohc,3i9d,2zm6,3d5c,2vqf,3df1,2qal,2wwl,3mr8,2b9m,1n34,2wh3,2xqd,1ibm,2hhh,2j02,2wrq,1voq,2uub,2qp0,3ohy,3uxt,2ow8,1hnz,3i8g,2uxd,2wh1,2qou,1pns,2noq,2x9t,3ofp,3jam,4g5t,2qbd,1vs7,3ora,2e5l,4duy,3ofa,2z4m,2wri,1fka,4g5m,2uu9,3oto,1vov,1vox,3i8h,1xnq,3oi0,3oi2,2v46,2qoy,3ms0,2i2p,3ofo,1i94,3i1m,2j00,3df3,3j36,3i1o,1ibl,2qnh,2xzn,3tvf,3uzi,3fih,1xmq,3jyv,3v2e,2xg1,4dh9,3uz3,4dhb,2uxc,3j13,3e1a,3kc4,3j5x,3uyd,3j0v,3j0z,3uzl,3uz7,3f1e,3uzg,2xsy,3kis,3tvg,2wdh,3huw,3bbn,1yl4,4kj6,4b3m,3izv,3e1c,3knh,1n32,2xzm,4bpp,3j0o,3knj,3j0l,3sfs,4w23,3j53,3uxs" "PF00177.16" "446" "2.40" "4rb5.G_2-149.4rb5.pdb1.pdb"
"1bc8" "Ets" "dna" "Ets-domain" "1k78,1bc8,4mhg,3ri4,1bc7,4b06,4iri,4lg0,3wtt,3wtx,4l0z,3wtv,3wtw,3wu1,1k79,1dux,1hbx,2nny,1pue,1awc,3mfk,1yo5,1mdm,1k6o,1k7a,3jtg,4bnc,3wts,3wty,3wtu,4l18,4uuv,4bqa,3zp5,4l0y" "PF00178.17" "35" "1.93" "1bc8.C_4-87.1bc8.pdb1.pdb"
"4r8p" "UQ_con" "dna" "Ubiquitin-conjugating enzyme" "4r8p" "PF00179.21" "1" "3.28" "4r8p.L_205-342.4r8p.pdb1.pdb"
"1vqo" "Ribosomal_L2" "rna" "Ribosomal Proteins L2, RNA binding domain" "3g4s,4tp3,4tp9,4ujv,3ccv,4qcz,4tp5,1vxn,4uy8,4v19,4tom,4qct,4ukg,1vxt,4qcv,3cce,4ujg,4tp7,3ccu,4war,4uls,4tpd,4w2b,4uln,4ulk,1vxj,3j01,4ul7,4ulq,4rbk,1vvo,4uka,4rb6,3ccr,4rb8,1vvw,4tpb,3cpw,4wwe,4pec,1vvu,4tpf,4uks,4ujs,4qs1,1vx9,4ukn,4ul5,4ujx,3g71,4ukl,4tov,4rbg,5aka,4u67,4ul0,4w2d,4rbe,4wwt,3pio,4ul2,4ujl,1vxq,3ccs,3g6e,4ujn,4ulc,3dll,4l6j,3ccj,4tp1,1vw0,4uk7,1vvy,4qcr,4peb,1vvq,4ulf,4wap,3j8g,4rbi,4kx2,4uk2,4uki,4qs3,4ukx,4kx0,2xg0,3cc7,4byc,4kj1,4too,1vy1,3j52,3j5a,4tox,3j50,3j3v,4kix,4hub,4rba,4kd9,4nw1,4csu,4kiz,3j5g,4ukq,4kcz,4jux,4qcp,3j5o,2zjq,3j5u,1vw3,3j5k,4qcx,3ccq,3j3w,3cc2,4ce4,4kj5,4kbu,3j5i,4qcn,4uk5,4ulh,4kfi,4nvv,4uk0,4kjb,4kj7,4kj9,1vvs,1vvm,3j58,4l6l,2xg2,3j7y,3j5e,3j51,4qjs,4ula,4uji,4qd1,4kfl,4ukc,4kd2,4k0q,1vy3,4kdb,4k0m,3j5w,4nvz,4kdk,3j56,1vxl,4btd,3v6w,4ukv,4kdh,1q82,2qbi,1qvf,4b8i,1q86,2xtg,1qvg,3j0y,1q7y,2hgq,3bbo,2qbg,2zjp,3j11,3v29,2qoz,1yit,2z4l,2qbk,3zvp,3j5c,4bye,2vhn,3j14,3sgf,1yjw,1q81,3cf5,3e1d,2vhm,4nvx,3ccl,2qbe,3kni,3j4x,2z4n,1vor,1yl3,2qba,1vp0,3tve,3izu,2hgu,2qam,3e1b,2qox,3cc4,3uz2,3oat,2qao,2qov,3uz9,2qp1,3uos,1w2b,1voy,3fik,1vou,2xux,1vs6,2qbc,3ccm,2j28,1vow,3j0t,3uxr,3j44,3uzk,2b66,3zn9,3j37,3v27,3df2,1vs8,1s1i,3r8t,3izt,3huz,3j7z,3r8s,3df4,4ejb,4io9,3v25,3i1t,3o58,4g5u,3kno,2gya,4g5l,2gyc,4g5n,4ioc,4b8g,3o5h,2b9n,3v2d,4ioa,3uyg,2b9p,3v6x,4gau,3oas,1vq4,3i1p,3d5d,2awb,1vqk,3oi3,1m1k,3i1n,3pip,3pyv,1kqs,1vsp,1kd1,3bbx,3zne,3tvh,3v23,1vsa,3uzf,3uz8,4gar,3orb,3ow2,1vq9,3i8f,1vqn,1m90,2qex,1vt2,3oh7,3j19,2qa4,1yjn,4dha,2zjr,2otl,1k73,1yij,3f1h,1yj9,1k8a,3v2f,3f1f,1vql,1yi2,4dhc,3oi5,1kc8,3oh5,3pyo,3i56,1k9m,1vqm,3i55,1jj2,3pyr,1yhq,2otj,1vq8,1vq7,3i9e,3kit,3kiw,4kj3,3ohz,1vq5,3ofc,3d5b,4ejc,1vq6,3i9c,3i8i,3kiy,3mrz,3ms1,1vqp,3pyt,3kir,3i1r,3i20,3cma,3ofq,3oi1,3ofr,3ofz,2i2v,3cxc,3og0,2aw4,2i2t,3cme,3ofd,3ohj,3i22,3ohk,3uzn,1vqo,3j5l,2j03,2wro,2wwq,3fin,4ujq,2wh2,3uxq,2wh4,2wdl,2xqe,2v47,2hgj,2wdn,2j01,2wrr,3knm,4g5w,3uzh,3j0w,2y0z,2x9u,3j12,2y15,2wdj,2y0v,1s72,4rbc,2y13,2wrl,3kcr,2y11,3uz1,2wdi,4kbw,4abs,2wrj,2y19,3cd6,3uye,2x9s,3knk,3hux,3j54,2y17,2v49,1nji,2y0x" "PF00181.18" "408" "2.20" "1vqo.A_10-82.1vqo.pdb1.pdb"
"4rb7" "Ribosomal_S3_C" "rna" "Ribosomal protein S3, C-terminal domain" "4ukm,2qow,3pyu,2b9o,2vqe,2hgp,2y10,4duy,2y14,3j0u,2b64,2y16,3pys,3fic,4dv7,4nvu,3pyq,2aw7,3f1g,3oaq,4dv4,2y18,1n33,2y0w,2y0y,3pyn,3d5a,3kix,4k0p,2y12,1s1h,3uxt,4bpn,3knl,2y0u,3uoq,2uuc,2vho,1j5e,2vhp,2f4v,2uub,2uu9,3e1c,2i2u,4bpp,3j13,2xzm,2xzn,3i1z,2xqd,3knh,2qoy,1xmq,3jyv,2uua,2e5l,1vov,3tvg,1vs5,2wrq,2wwl,3i8h,1vs7,2wri,2x9r,3zn7,2hgi,3i9d,4dh9,2wrk,3i9b,1vos,1voq,1vox,2wrn,3j0z,3uz6,1voz,3v2e,2x9t,2wh1,1pnx,3i8g,2wdm,1pns,3knn,3sfs,2wdg,3uz3,3kis,2wdh,2wh3,3uzi,2z4k,1xnq,3uyd,4ji1,1xnr,2uxc,4kja,3kc4,2wdk,3knj,1i94,4dr2,2j02,4dhb,3f1e,3huw,1hnw,2xsy,3i21,3df1,4bpe,3fih,2qnh,2qbf,2xg1,1hnz,3uzg,1hr0,4dv3,3j5x,3bbn,3tvf,3izv,2qbh,3i1o,2qou,2j00,2gyb,1ibk,3i1m,2qbd,1yl4,2qb9,4gkk,2qan,1ibm,3j36,2qal,3kiu,3df3,2qbj,3e1a,2z4m,3uxs,3uz7,2qbb,2i2p,1n36,2gy9,3jam,4gd1,1fjg,1n32,2zm6,1ibl,4uju,4tp8,4uk6,4tow,4tpe,5a2q,3j80,4uq5,4ulj,4ujz,4ulg,4rbd,1vxw,4ujm,1vxp,1vvl,4tp0,4aqy,1vvp,4qcw,1vvv,4ujh,4qcm,4qs2,4qd0,4ox9,4wt8,4rbf,4ul1,1vxm,4tpa,4wus,1vvt,4ukf,1vvz,4nvy,4pe9,1vx8,1vwv,4ujf,3j7a,4ulb,4w2a,1vy0,4rbb,4ukk,4uk1,4rbh,1vxk,4waq,4d5l,4tol,4ton,4ujp,4qcs,4qcu,4ulp,4ukp,4rbj,4yhh,4wao,4qjt,4ulm,4kwz,4tp6,4ul9,4ukw,4uk4,4uku,4ul4,1vvr,4ukr,1vvn,4tp4,4uk9,4d61,4ujw,4ukb,4ji3,1vxi,4lf5,4rb5,4ujk,4ujr,4qco,2xfz,4cr1,4byd,3j4w,4b3s,4lf9,4lfc,4ji0,4ji2,3j4z,4w23,4ji8,3j5d,4kj0,4kdg,3j5h,4kd0,4qcy,4l6m,4lf8,4khp,3j00,4kj8,4byb,4kzz,4kfh,4ulr,4lfa,4nxn,3j5n,4ul6,4kcy,4b3t,4lfb,4lf6,3v6v,4kjc,3v6u,4jv5,3j5b,4b3r,4btc,4nxm,4kiy,4nvw,4tp2,4ji5,3j5t,4kj4,4qcq,4ukh,1vx2,4kj2,4tou,3j4y,4juw,1vxs,1vvx,4gkj,4nw0,4kbv,3j5j,4ukz,1vxz,4adv,3j5f,3j59,4l6k,4kbt,4lf7,4kd8,4kzx,3j55,4pea,4tpc,2uxb,4kda,1vw9,1vx5,4bpo,1hnx,4uq4,4cxc,3j4v,4rb7,1vy2,3j81,4rb9,4kdj,4kzy,4ji4,4ji7,4w28,4a2i,4w2c,4ji6,4jya,4kx1,4kvb,3j57,4qs0,3znd,3mr8,1xmo,4g5t,3d5c,1n34,2hhh,3j53,2ow8,2hgr,2v46,2b9m,3kiq,2vqf,4g5m,2qp0,4uer,4dv0,2avy,3uyf,3or9,3ms0,4k0k,3uz4,3uzm,4b8f,3j0x,4duz,4dv6,3t1h,3i1q,3oar,4dr5,3ofo,3o2z,3oto,4gaq,3ofb,3ofa,2xuy,3ofp,4abr,4ej9,3ofx,4g5k,4b3m,3oge,3t1y,3j0v,3ora,2ykr,4dr1,4dr3,3o30,3ofy,4kj6,3zvo,3v2c,3ohc,4b8h,3ohy,4g5v,4dr4,3uzl,4ule,4gas,3izw,4kfk,3oi0,3ohd,4dr6,3j10,3v28,2v48,2uxd,4dv2,3j20,3oi2,4lf4,4dr7,3v22,3ogy,3j18,3v26,4dv5,4k0l,3huy,3oi4,3v24,4dv1,4eja,3j43,3i1s,4gd2" "PF00189.15" "439" "2.40" "4rb7.C_119-202.4rb7.pdb1.pdb"
"1l3l" "GerE" "dna" "Bacterial regulatory proteins, luxR family" "4wul,4wu4,1zg5,1l3l,1h0m,4wuh,1zg1,1je8,1zlk" "PF00196.14" "9" "1.66" "1l3l.C_162-228.1l3l.pdb2.pdb"
"4rb5" "Ribosomal_S19" "rna" "Ribosomal protein S19" "2vhp,1i94,3ms0,1vos,3huw,2xqd,2xzm,1ibm,2wrq,3mr8,3i1m,2ykr,1vs5,3i1o,2wri,2uu9,1vov,3znd,3oi2,3i8h,1xnq,2j00,3knn,2wwl,3ofp,3jam,2wh1,3fic,2qp0,2b9m,2vqf,3ohy,3ogy,2wdg,2zm6,2qbd,3ora,1voq,4gkk,2j02,4g5t,2wdh,1yl4,3uz6,2qal,2x9t,3izv,3df1,1n33,2v48,2v46,3i8g,3ohd,1pns,2hhh,1hnz,3kiq,2i2p,3oaq,1fka,1n36,1xmo,1vs7,1vox,2ow8,3ofa,3oto,3v24,2uub,3ohc,4duy,2vqe,3uxt,3j5j,2y14,1n34,3oi0,2e5l,3ofo,2qou,2qoy,3df3,3j13,3i9d,1xnr,2gyb,2hgr,3f1g,4g5m,1n32,1ibl,3d5c,2uxd,2z4m,2wh3,4tpe,4qcs,4ujf,4qs2,5a2q,4ukf,1vy0,4wt8,4aqy,4ukr,4ul9,4ul1,4yhh,1vx8,4ulp,4rbj,4rbd,4ujm,4ulj,4tp4,1vvv,4uku,4ji3,4uq5,4ujz,4ukw,4ukk,4waq,4pe9,4rbh,4ulb,4qcu,4ujw,4uk9,4tp0,1vxp,4nvy,4tow,4ulg,1vxw,4d61,4uk6,4uju,4ujp,4rbb,1vvl,4qcw,4rbf,1vvt,1vxi,4ulm,4w2a,4wao,1vxm,4d5l,4uk4,4kwz,4tpa,4qd0,4tp6,3j80,4tol,1vvr,1vvx,4ox9,4ul4,1vvz,1vvn,4ton,1vxk,4wus,4qjt,1vvp,1vwv,3j7a,4uk1,4qcm,4tp8,4ujh,4ukb,4ukp,3uyf,4dv1,4dr6,4dv6,3j18,3j36,4dr3,4nvw,4gaq,4dr4,4dv5,4b8f,4kja,4k0p,2xuy,4duz,3j0x,3uz4,1s1h,3v22,4dr7,4ule,3i1q,3t1h,4bpp,4g5v,4dr1,3v28,3j10,4ej9,4rb7,2xg1,3j20,3v26,4b8h,3huy,3izw,3i1s,4bpo,4abr,4gas,3v2c,2avy,3uzm,4bpn,4gd2,4g5k,3t1y,4dv0,4eja,4ji7,4kd8,3j57,4kj6,2qnh,4kzx,3uyd,3j0z,2xsy,3jyv,4kfk,3uzg,3uxs,3bbn,4k0l,3j0p,3j0o,3uz7,2uxb,3kc4,3zvo,4dh9,3tvf,4bpe,3tvg,1xmq,3kis,3j0v,4w23,3e1a,4dhb,3v2e,2uxc,3knj,3f1e,3sfs,4dv2,3e1c,3j0l,3j0q,3j53,3fih,3knh,3uzl,3j5f,4kda,4b3s,4tpc,1hnx,3j81,4ji5,4kx1,3j5n,4nxm,3j00,4kj8,4kfh,4nvu,4gkj,4b3t,4kvb,4kd0,4a2i,4b3m,4qcq,4qco,3j59,1vx5,4cxc,4lfa,3j4w,4nw0,4ujr,4khp,3j4y,1vx2,4kjc,4qs0,3j5h,4ul6,4ji0,4kcy,4ukh,4lf7,4kiy,4ulr,3j4v,3v6v,4lfc,4b3r,4kzz,4lf6,4kzy,3j5t,3j43,4kj4,4jya,4kj2,4tp2,4adv,3j5b,4nxn,4kbt,4lfb,4jv5,4l6k,4ujk,4rb5,4byb,4l6m,4kbv,4byd,4kdg,1vy2,4ji2,4tou,4rb9,4lf9,3j5x,4w28,4kj0,4kdj,4ji4,4qcy,3j5d,2xfz,4lf5,1vxz,4ji8,3j4z,4ji1,1vxs,4ji6,1vw9,4cr1,4pea,4uq4,4btc,3j55,4juw,4ukz,4w2c,3v6u,4lf8,4uer,2hgi,3ofx,2wdk,2wrn,2y16,2hgp,2wdm,2y12,4dv3,3oar,3o30,4gd1,4lf4,2uua,2qow,2b9o,4dr2,1ibk,2y10,2wrk,3pyn,2qbj,4dv7,3i21,2uuc,2y18,3pyu,3uz3,3ofb,2y0y,2xzn,1fjg,3i9b,3kix,2qbh,3oi4,3ofy,1j5e,2i2u,2x9r,3uzi,2qbf,3knl,2vho,1voz,3pyq,3or9,1hnw,3o2z,2y0u,4dv4,3pys,3uoq,1pnx,1hr0,2qb9,2z4k,4dr5,3oge,2qbb,2b64,4ukm,2aw7,3kiu,3i1z,3j0u,2qan,2y0w,2f4v,3d5a,2gy9,4k0k,3zn7" "PF00203.16" "444" "2.40" "4rb5.S_3-83.4rb5.pdb1.pdb"
"4gfh" "DNA_gyraseB" "dna" "DNA gyrase B" "4gfh" "PF00204.20" "1" "4.41" "4gfh.A_246-428.4gfh.pdb1.pdb"
"1p71" "Bac_DNA_binding" "dna" "Bacterial DNA-binding protein" "1owf,1p71,1ihf,1ouz,2ht0,2np2,1p51,2iie,2iif,1owg,4qju,1p78" "PF00216.16" "12" "1.90" "1p71.B_1-90.1p71.pdb1.pdb"
"1vqo" "Ribosomal_L22" "rna" "Ribosomal protein L22p/L17e" "4csu,4a1e,3sgf,3j0y,3fik,3f1h,1yit,4nvx,3uos,4b8i,3j11,4kcz,2qex,3e1b,3j0t,4dhc,3cf5,3j54,3f1f,1vsp,2wwa,3uzf,4a1a,1yi2,1vqn,4kd9,3tve,3v2f,3uz8,2xux,3kni,4bye,2b9p,3tvh,2ww9,3j14,1vq4,1yjw,3cma,3j19,2xtg,3ccm,3e1d,4a17,2otj,3bbo,2v47,1w2b,3kir,3fin,2zjp,2wdj,3j5l,1vs6,3uxq,3uz9,1vq5,2xqe,3ofr,4kbw,3df2,2gya,3o58,2hgj,2z4l,3kcr,3ohj,3oat,3i8i,2wwq,2j01,2qoz,2hgu,1jj2,2qov,3zvp,3j12,1vt2,1yhq,1vs8,2qbc,1kd1,3knm,3df4,2z4n,2wdn,1yj9,2aw4,3i1n,1vq9,2qa4,2wh2,3ofq,3orb,3kiy,2wh4,3i1p,1vsa,2wdl,3o5h,3cc4,1m1k,3bbx,3cd6,3d5b,1vq6,1nji,2wdi,2qp1,1voy,2vhm,2hgq,1vql,2otl,3i8f,2b9n,1yij,1vqm,2i2t,1q81,4dha,3kiw,1q82,1yjn,3oi5,1qvg,2b66,1m90,1vqk,2wrr,3oh5,1vor,1kqs,2wro,2j03,3i9e,4k0q,3j5w,3j51,1vy3,4nvv,4kj1,1vxl,1vvs,3j3v,3j5k,4l6l,2zjq,3j58,4kd2,3j4x,4btd,4rbc,3j7y,4hub,4nvz,4tox,4qjs,4kix,3j5u,3cc2,3j5e,4kbu,4kj5,3j5g,4nw1,4jux,3cc7,4k0m,3j5o,1vy1,4too,4kjb,3j5i,2xg0,3j5a,3j50,3j3w,4ce4,4byc,4kiz,3j56,4kdk,4qcx,1vvm,4rba,3v6w,2xg2,4kfi,4kdh,4kj9,3j52,4kj7,4kdb,4kfl,1vow,3uz2,2i2v,3pyt,3uz1,2qox,2x9s,3ohz,1k8a,2y15,3mrz,2qbi,1vq8,3v6x,3i9c,3d5d,2v49,2qbe,3oi3,3cxc,3oi1,4a1c,2y11,3i55,1vq7,3i56,4qcn,3oh7,3ms1,1s1i,2qba,3hux,2y0v,1k73,3uxr,3izu,2x9u,2gyc,1q7y,3pyr,3kit,1vqp,3j0w,3r8t,4qcp,3ofc,2y19,4qd1,3ohk,4abs,3i20,3pyv,1s72,1vp0,3v29,1k9m,2vhn,1kc8,1vqo,1q86,2y0z,3uye,2qao,3ofd,2y0x,2qbk,2wrl,2wwb,3ofz,3knk,2wrj,2y17,3uzh,1qvf,2zjr,2qam,2qbg,3i22,2y13,3pyo,2j28,3pip,3cme,3og0,1vou,1yl3,4u67,3ccq,4rbe,3cpw,4uy8,4war,4tp3,1vvo,1vxj,5aka,3j01,4tov,4tom,4tp5,4w2d,3pio,4wap,4v19,4tp1,4tpb,1vx9,3ccl,4wwe,3ccs,4rbg,4kx0,4l6j,3ccj,3dll,1vvu,3j8g,4qcv,3g71,4tp9,1vw0,4qs3,4pec,4tpd,4wwt,1vvw,3ccr,4qs1,4qct,1vxt,3cce,4kx2,4rbk,4qcr,1vvq,4w2b,4rbi,3ccv,1vxn,3g4s,4peb,3g6e,3ccu,3j7z,4qcz,4rb6,4tpf,4tp7,4rb8,1vxq,1vvy,3uzk,3uyg,4io9,4g5l,3v25,4b8g,3uzn,3ow2,3i1r,4g5w,3izt,4ioc,4g5n,3oas,3r8s,3j5c,4kj3,4g5u,4ejc,4ejb,4ioa,4gau,3j37,2awb,3i1t,3v27,3zne,3zn9,3v2d,3kno,4gar,3v23,3huz" "PF00237.14" "379" "2.20" "1vqo.R_16-149.1vqo.pdb1.pdb"
"1vqo" "Ribosomal_L14" "rna" "Ribosomal protein L14p/L23e" "3v2d,3zne,3r8s,3j37,4kd9,2awb,4ejb,3e1d,3v2f,3v25,3v23,3izt,3e1b,3v27,3i1t,4ejc,3uyg,3uzk,3uzn,4g5l,4ioa,4qcn,4g5n,3r8t,3j5c,3j19,3huz,3j16,4ioc,3i1r,3ow2,4gau,4b8g,3zn9,4io9,4g5u,4gar,4kj3,3kno,3oas,4csu,3j3v,4kiz,4byc,4k0q,4qd1,4btd,3ccq,3j52,4hub,4qjs,1vxl,4kj7,4rba,2zjq,4kdk,4kdb,4kfi,4too,4kj5,4nw1,4kdh,4nvv,4kbu,4kfl,4qcx,3j5k,4nvz,4tox,3j50,3cc7,3j7z,4k0m,4ce4,3j4x,3j5w,1vy1,1vy3,3j51,3j5u,3cc2,1vvs,2xg2,4qcp,3v6w,4kd2,3j5a,1vvm,4kj9,4l6l,3j5i,3j56,3j58,3j5e,2xg0,3j5g,3j3w,4kix,3j5o,4jux,4kjb,4kj1,3j11,3kni,1vqn,2z4n,3j14,2z4l,3cf5,4kcz,3cc4,3f1h,4dhc,3uz8,3ccl,2xux,3bbo,3j5l,2b9p,3zvp,3sgf,1vs8,3j0y,1yit,3j0t,1vsp,1yjw,4bye,1vq8,3uz9,3cma,3tve,3fik,2otj,2qov,1vq4,2xtg,2qbk,3tvh,4b8i,2qbi,2qbg,2qbe,2qox,3f1f,2qp1,4nvx,2qoz,3d5b,3uos,2qex,2qbc,3ccm,2qao,4kbw,3cd6,3uzf,2qam,1yi2,2qba,2v47,1vsa,1vt2,3kiw,3ohj,2hgu,3i1n,3oi5,1jj2,2wrr,2hgj,1q82,2wh4,1voy,2wdj,2i2t,3oh5,2gya,3ofq,2qa4,3oat,2wdl,1vq6,3izz,2wh2,3df4,3uxq,2otl,1m1k,3i1p,2b9n,3i8f,3bbx,2wro,3j44,1m90,1yj9,3kcr,3knm,1yjn,4dha,2xqe,2j03,1qvg,2wwq,3fin,3df2,1kqs,2wdi,1vq5,1vqm,1q81,3ofr,2b66,2wdn,2hgq,1vs6,3i9e,3orb,1vq9,3i8i,1w2b,3o58,3o5h,1vor,1vqk,2vhm,2j01,1kd1,3j7y,1vql,1yhq,3kiy,4kx2,4tp9,4tom,1vxn,4uy8,4tp1,4wap,3ccv,3cce,4tov,1vvy,1vvq,1vxj,1vvo,4v19,3j01,4pec,3j8g,3ccr,4qcv,4tp7,4tpb,4rbk,1vxt,1vvw,4qct,4tp3,3g4s,4qcz,4rb6,4war,4qcr,4rbg,3g6e,3pio,4l6j,4rbe,3ccu,1vxq,4rb8,5aka,3dll,1vx9,3g71,4tpf,4kx0,4tp5,3ccj,3cpw,3ccs,4wwt,1vw0,4w2b,1vvu,4qs3,4wwe,4u67,4qs1,4peb,4w2d,4tpd,4rbi,3v6x,1qvf,3ofd,2v49,1vqp,3ohk,3i9c,3ofc,3mrz,3pyt,3pip,1vou,1nji,3i22,2j28,4rbc,3uxr,2y0z,3j12,1q86,1q7y,3uzh,2gyc,1vq7,3uz1,3ms1,3oh7,2zjr,1s72,3ofz,2y13,1yij,2x9u,3cxc,2vhn,3cme,1yl3,3pyv,1kc8,1k73,3i56,2aw4,2zjp,2x9s,2y11,3izu,3pyo,3kir,2wrl,4g5w,3og0,2y0v,2y17,3i55,1vow,2y0x,3hux,3pyr,2wrj,3j54,2y19,3oi3,3knk,3ohz,3oi1,3d5d,1vp0,3v29,4abs,3j0w,3uz2,3i20,3uye,2i2v,2y15,1k9m,1vqo,1k8a,1s1i,3kit" "PF00238.14" "375" "2.20" "1vqo.K_11-132.1vqo.pdb1.pdb"
"1gdt" "Resolvase" "dna" "Resolvase, N terminal domain" "2gm4,2r0q,1zr2,1zr4,4m6f,1gdt" "PF00239.16" "6" "3.00" "1gdt.B_3-139.1gdt.pdb1.pdb"
"4zbn" "NGF" "dna" "Nerve growth factor family" "4zbn" "PF00243.13" "1" "2.45" "4zbn.A_11-114.4zbn.pdb1.pdb"
"3sjm" "Myb_DNA-binding" "dna" "Myb-like DNA-binding domain" "2qhb,3ukg,1w0t,1w0u,1ign,1h88,3sjm,4gfb" "PF00249.26" "8" "1.35" "3sjm.A_447-495.3sjm.pdb1.pdb"
"3l2c" "Fork_head" "dna" "Fork head domain" "3qrf,1vtn,3g73,3co6,2c6y,2as5,3co7,3l2c,3coa,2a07,2uzk,4lg0,4wk8" "PF00250.13" "13" "1.87" "3l2c.A_98-177.3l2c.pdb1.pdb"
"1vq8" "Ribosomal_L16" "hybrid" "Ribosomal protein L16p/L10e" "4u67,4kx2,4v19,4ukl,1vvu,4kx0,3pio,4rb8,1vvw,4pec,1vxj,4w2b,3cpw,4uka,4tp1,4ujv,4peb,4uy8,3ccu,4war,3g71,1vw0,4tpf,4wwe,3j8g,1vx9,4tpd,4ujg,4qcr,4rbe,4qs3,4l6j,3ccj,3ccr,4qcz,1vxt,4tp9,1vvo,4qct,3ccv,4wwt,4ulf,5aka,4tp5,3ccs,4ukg,4ul5,4ulq,4ujl,1vxn,4tp3,4tpb,4ujq,4rbi,1vvq,4rbg,3cce,4rbk,4qcv,4qs1,1vvy,3ccq,4tom,4rb6,4tov,4tp7,3g6e,3j01,4wap,3dll,1vxq,4w2d,4ulk,3g4s,4ul0,2j28,2y11,4rbc,3og0,1vqo,4qd1,3i55,3ofc,1q7y,3hux,2qbk,2gyc,2qba,1k9m,1vou,3i56,3uye,3ms1,3i9c,2qam,1s1i,3ohk,1k73,1s72,2y0z,3v29,3i20,3uxr,3izu,4a1c,2vhn,1vq7,1q86,1kc8,3i22,1vp0,3oh7,3pyr,3j54,2aw4,2y0v,4abs,1vqp,3kit,2y19,3pyv,2i2v,3j0w,3cme,1yl3,2v49,3knk,3cxc,3ofd,3kir,2qox,1qvf,2qao,3pyo,3mrz,3j12,3uz1,1k8a,3uz2,2qbi,3oi1,2y15,3d5d,3pyt,1nji,3ohz,2y13,2x9s,3oi3,2qbe,1yij,2y0x,3pip,3ofz,2y17,4g5w,2wrj,2wrl,2zjr,1vow,3uzh,2x9u,2qbg,4dhc,3f1f,4kcz,3j4x,2b9p,3j0l,1yi2,1yjw,4b8i,3j0q,4a1e,2qex,3tvh,3j11,4a17,4nvx,3f1h,3e1d,3zvp,4kbw,1vsp,1vq8,3d5b,3ccm,3j5l,3sgf,3cma,2otj,3cd6,3fik,3j14,3uzf,3j0y,2xtg,4kd9,3uz8,3kni,3e1b,3tve,1yit,3ccl,3cf5,4bye,3j0t,3uos,3bbo,2xux,1vq4,1vqn,4a1a,4ioc,3j19,4io9,3kno,4gar,3huz,4g5u,3v6x,3j7z,3uzn,4csu,4ioa,3r8t,4g5l,3uyg,4g5n,3uzk,3zn9,4ejc,4kj3,3r8s,3v25,3oas,3ow2,3i1t,3v2f,3i1r,4b8g,3j37,3zne,3v23,3v2d,3izt,3v27,4gau,3cc4,4ejb,2awb,4kj5,1vy3,3v6w,3j51,4ce4,3j5k,3j5e,3j58,1vy1,2xg2,4k0m,3j5g,4jux,2zjq,3cc7,4ula,4kfl,4byc,3j5w,4kjb,4nw1,4kj1,4uk0,4l6l,4uk5,3j5a,4too,4kdh,4kbu,4kd2,4nvz,4nvv,4tox,4qcx,3j5i,4kix,4qcp,4ukv,4kdb,4kiz,4qcn,1vxl,1vvs,4kdk,4ukq,3j5u,3j56,3cc2,4kj9,4rba,3j44,4btd,4kj7,1vvm,4qjs,3j5o,3j52,2xg0,3j50,4hub,4kfi,4k0q,1kd1,2qp1,3i9e,2vhm,3kiw,1yjn,2xqe,2qoz,1vql,2z4l,2j01,1vq5,2hgu,1vqk,2wh4,1w2b,2hgj,2qbc,3df2,3ohj,3kiy,2hgq,3fin,3j5c,3oi5,2v47,1q81,2b66,2wdi,1vq9,1yj9,1kqs,3j7y,1vq6,1vs6,3uz9,2z4n,2j03,1qvg,3i8i,3kcr,2wdn,2wwq,3ofr,1voy,2wdj,2zjp,2wh2,3uxq,1m1k,1vqm,3i1p,2i2t,1q82,3i8f,3bbx,2wdl,3df4,3oh5,3knm,3oat,2wro,3ofq,3o5h,1vsa,2qa4,1yhq,2otl,1y69,3i1n,1vs8,1vt2,3o58,2gya,2qov,4dha,2b9n,1m90,1vor,3orb,1jj2,2wrr" "PF00252.13" "395" "2.20" "1vq8.H_2-165.1vq8.pdb1.pdb"
"4rb7" "Ribosomal_S14" "rna" "Ribosomal protein S14p/S29e" "2x9t,2hhh,2wdg,3mr8,2qal,2wrq,2vqf,3d5c,1vs7,1n33,2ow8,2qbd,2uub,4lf6,3izv,2qp0,2j02,1yl4,1hnz,2wh1,3i8g,2qou,4kzz,4g5m,4w2c,2zm6,1voq,3ofa,3kiq,3uz6,3ofp,3v24,2wwl,3uxt,3i9d,1vs5,3j5j,3df1,2hgr,3ohc,2wri,3ofo,3oi0,1pns,2v48,2i2p,4g5t,2qoy,1ibm,3huw,3ohd,2gyb,1n34,1xnq,3oto,3ogy,2y14,1xmo,2v46,3i1o,2uu9,2ykr,3knn,1xnr,2wdh,3df3,2vhp,1i94,4gkk,2e5l,1vos,4duy,2xqd,1vov,3oaq,1ibl,2wh3,3znd,2uxd,3fic,3oi2,3i8h,3i1m,2j00,3ohy,3jam,2b9m,1vox,3ms0,2z4m,3ora,3uz7,3bbn,3tvf,2uxc,4kzx,3j5x,4dv2,3uz3,2qnh,3uzl,3uzg,3uxs,3f1e,3fih,4dhb,3knj,1n32,3j0v,3j0z,4nxn,2xsy,3zvo,3e1c,3e1a,3sfs,3uyd,4dh9,4k0l,3tvg,3uzi,3kc4,3kis,3j53,3v2e,3jyv,4bpp,2xg1,3knh,3j13,3j5h,1xmq,4kj6,4waq,4rbh,4aqy,5aj3,4ujf,1vvp,4rbd,1vy0,4yhh,1vvn,4wus,4qjt,4ukf,1vvv,1vxp,4ul9,4nvy,4qs2,4uk9,4rbj,1vx8,4tpe,4pe9,4ulp,1vxw,4tp0,4tow,4kwz,4d5l,4qd0,4uk4,3j7a,4ox9,4ujz,4qcu,4ujp,4wt8,4rbb,4ji3,4tp6,5a2q,1vvr,4tol,4tpa,4ulj,3j80,4uku,1vxi,1vvx,4tp4,1vxm,4wao,4ton,4ukp,4qcs,4uq5,4ukk,1vwv,1vxk,4qcm,1vvz,4tp8,1vvt,4w2a,4uju,4qcw,4d61,4rbf,4ul4,1vvl,2qbj,2b64,1j5e,3oar,3ofy,3d5a,3j59,3pyn,1n36,2wdk,2hgi,4bpe,1s1h,2i2u,2y10,3i1z,3kix,2y0w,3i9b,2qbb,1ibk,1hnw,3pyu,2qbh,2hgp,2y12,4dv3,2y0y,2uua,2gy9,3ofb,2f4v,3pyq,2qow,3ofx,2qbf,3o2z,2xzn,4dr2,2xzm,2y0u,2y16,3o30,2wdm,2vqe,1voz,4gd1,3oge,2z4k,2b9o,3j0u,2wrk,2qan,2x9r,2vho,2wrn,4dv7,3oi4,3f1g,4dv4,1hr0,3uoq,3zn7,1pnx,2uuc,2qb9,2aw7,2y18,3or9,1fjg,3knl,3i21,3kiu,3pys,4kcy,4kda,4byb,1hnx,4b3t,4kx1,4rb5,4kiy,4kj8,4kj0,4nw0,4kbv,4byd,4qs0,4jya,4kzy,3j5n,4ji2,4w28,4kfh,4tou,4ji0,1vy2,4tpc,4tp2,4jv5,1vw9,4b3r,4ukz,3v6u,4a2i,4ji8,4adv,4uq4,4btc,4ji4,4cr1,4pea,3j81,4lf8,4kbt,3v6v,4l6k,4kdg,3j5b,3j4w,4kj2,4b3s,4kj4,3j5d,3j4v,3j5f,4juw,4lfc,4l6m,4cxc,3j4z,4kvb,4w23,4qcy,4qco,4kd0,4lf5,4b3m,3j43,4qcq,4lfb,3j5t,2uxb,4ji1,4nvu,4gkj,1vxs,4ji5,4ji6,4nxm,3j55,4ujk,1vx2,4lfa,4khp,3j00,2xfz,1vxz,1vx5,4kdj,3j6v,4lf9,4ji7,3j4y,4kjc,4lf7,4rb9,4dr1,4b8f,4dr3,3j36,4duz,4ule,3t1y,3huy,4dr6,4kja,4g5v,4dr7,3uzm,4eja,4rb7,4bpn,4gas,2avy,4k0p,4dv6,4dr5,3v26,4dv1,2xuy,4g5k,3v28,3v2c,4b8h,4dv0,4gaq,3i1s,4kd8,4dv5,4ej9,4lf4,3t1h,3j0x,4kfk,4nvw,3uyf,4k0k,3izw,3uz4,4dr4,4gd2,3j57,4bpo,4abr,3v22,3j20,3i1q,3j18,3j10,4uer" "PF00253.16" "424" "2.40" "4rb7.N_7-60.4rb7.pdb1.pdb"
"2z3x" "SASP" "dna" "Small, acid-soluble spore proteins, alpha/beta type" "2z3x" "PF00269.15" "1" "2.10" "2z3x.A_2-57.2z3x.pdb1.pdb"
"3pey" "DEAD" "rna" "DEAD/DEAH box helicase" "2j0s,2xb2,3ex7,3sqw,3fht,3i61,3tmi,2hyi,3i5y,2ykg,3sqx,2db3,2p6r,2xgj,4qqx,4tz0,4tyy,4tz6,4a36,2wwy,4tyw,4tmu,4tyn,3pey,4bpb,3g0h,3pew,3i5x,2j0q,3i62,4ay2,4qqy,4qqw,4qqz,4d26,3zd6,3zd7,4d25" "PF00270.24" "38" "1.40" "3pey.A_116-281.3pey.pdb1.pdb"
"3pey" "Helicase_C" "rna" "Helicase conserved C-terminal domain" "4qqy,4d26,4o3m,4qqz,4qqw,4d25,2j0s,2db3,2jlx,2jly,3ex7,2p6r,2xb2,2jlu,2nmv,3i5y,2jlv,3fht,2hyi,2jlz,3v4r,3tmi,3sqw,3i61,2d7d,3sqx,3rc8,4cgz,4db2,2xgj,4gl2,4db4,4a36,4qqx,4tyn,4tyy,2wwy,4tz6,4u7d,4tz0,4tyw,4tmu,2j0q,3pey,3g0h,3i62,3pew,2jlw,3i5x,2fdc" "PF00271.26" "50" "1.40" "3pey.A_348-431.3pey.pdb1.pdb"
"1vqo" "Ribosomal_L23" "rna" "Ribosomal protein L23" "1vow,3hux,2qao,2qbk,3uzh,1q7y,2y0x,2wrj,2qam,3i22,3pip,1q86,2y0z,3oh7,1k73,1vqp,2y0v,3og0,1vou,3ofz,2gyc,1k8a,2x9u,2wrl,2y17,2j28,3i55,3pyv,1qvf,2y13,4a1c,3v6x,1vq8,3uz2,3ohz,2qbi,3i9c,3pyt,2x9s,2y15,3d5d,3oi1,3oi3,2qbe,3pyo,2wwb,2zjr,3cxc,3knk,3cme,2qbg,3r8t,3mrz,3ofd,2v49,1yl3,2qox,3uz1,2i2v,3i56,3ofc,1s1i,3izu,4qcp,1s72,3uxr,2vhn,1vp0,3kit,2y19,3ms1,3ohk,2y11,3sgf,1vq7,3j7y,4qcn,4qd1,1kc8,3v29,3j0w,4abs,3pyr,3uye,1k9m,3i20,2qba,1vqo,3ccq,4kd2,1vvs,3j5o,4l6l,3j5a,4qjs,4hub,4kj1,3j58,3j52,4kiz,4kj9,3j3w,3j3v,3j5i,3j46,4kix,4rbc,2xg2,1vy3,3j5u,3j5w,4jux,3j5e,3j5g,3j4x,3j51,2xg0,3v6w,4nvz,3cc2,1vxl,4kjb,4qcx,4btd,4nvv,4kbu,4tox,4kdb,2zjq,4byc,4kj5,4nw1,4too,4ce4,3j56,4kfl,3cc7,3j54,1vvm,1vy1,4kdk,3j50,4k0q,4kfi,3j45,4rba,3j5k,4kdh,4k0m,4kj7,1vq5,3df2,1m90,3i1p,3oat,3i1n,1q82,2qoz,1vqm,1vor,3oi5,4dha,3cd6,1voy,3orb,1m1k,3ofq,2v47,3df4,3ofr,2wwq,3i8i,1vt2,4g5w,3cc4,1vq9,2aw4,3ohj,1kd1,3knm,2hgq,3zvp,1yhq,2hgu,1yij,3kcr,3j12,1vs6,3uz9,2qov,2zjp,2i2t,2wh4,2wdj,1vql,2wh2,2j03,2wdi,2b66,1vqk,3uxq,2qbc,2hgj,1w2b,3o5h,2qp1,1jj2,2wdl,1vq6,3d5b,2j01,3fin,3kir,2z4n,1vs8,2gya,3o58,1yj9,2wdn,2z4l,2xqe,3bbx,1qvg,2otl,3kiy,1yjn,3j5l,3i8f,2qa4,3i9e,1kqs,2wro,1vsa,2b9n,2vhm,4kbw,1nji,1q81,2wrr,3kiw,3oh5,4l6j,4qcz,1vxq,3ccu,4qs1,3ccj,1vx9,4tpd,4rbk,1vvq,4tp1,3ccs,4qcr,4rb6,3ccv,4tp9,1vvu,4tov,4w2d,1vxt,4peb,3g6e,4v19,4rbg,4pec,3j01,4wwt,1vxj,3ccr,4tp5,4war,4tp3,4uy8,4qs3,4wap,4w2b,5aka,4tom,4wwe,4qcv,4tpb,1vvo,4tpf,4kx2,3j8g,3dll,4qct,4kx0,1vvy,3g4s,3g71,4rbe,4rbi,1vw0,3ccl,4u67,4tp7,1vxn,4rb8,3cpw,3cce,1vvw,3pio,3cma,1yit,3j0y,4nvx,3cf5,3uzf,3j19,4csu,3v2f,3kni,2xtg,3uos,3tve,4a1a,4kd9,3j14,4bye,3v2d,3tvh,3j7z,3bbo,4ejc,1vq4,2ww9,3e1b,3uz8,3f1f,1vsp,2otj,2d3o,3j0t,1yjw,3f1h,3fik,2wwa,2b9p,4kcz,4a1e,1yi2,4a17,3j11,2j37,3ccm,2xux,1vqn,4dhc,4b8i,3e1d,2qex,3uyg,3v25,3zn9,3r8s,3i1t,3v23,3huz,3v27,2awb,4gau,3j37,3zne,4ejb,3kno,4io9,3uzk,3uzn,4g5u,4g5l,4b8g,4g5n,4gar,4ioc,3oas,3izt,3ow2,3j5c,4ioa,4kj3,1n8r,3i1r" "PF00276.15" "384" "2.20" "1vqo.S_2-81.1vqo.pdb1.pdb"
"1vq8" "Ribosomal_L5" "hybrid" "Ribosomal protein L5" "4ioc,3uzk,3cd6,3uzn,3j44,3huz,3j5c,4b8g,3j19,3ofz,3v27,3zn9,3ofc,3og0,2awb,4g5l,3zne,3ofd,4kj3,3kno,4ejc,3orb,4io9,4gau,3izt,3r8s,3v25,4g5u,3v2d,3uyg,3v23,4g5n,3ow2,3oas,4gar,4ioa,3i1r,4ejb,3r8t,3mrz,3i1t,2aw4,3ofq,3v2f,3ofr,3ms1,3j50,4qcx,4uk5,4kj5,4nvz,4kj1,4ula,4byc,4ukv,4kcz,3j51,1vy3,4qcn,4kix,1vy1,4rba,4qcp,3cc2,3j5o,3j5e,3j5u,4kfl,2zjq,4kbu,4kdh,4nw1,4uk0,4jux,4kdk,3j5g,4hub,4nvv,4too,3j5k,4tox,4kj9,4kj7,3ccq,4qd1,3v6w,4kd2,2xg2,4qjs,3j7z,4kdb,3cc7,4l6l,1vvs,3j3v,3j52,4k0q,4ukq,2xg0,3j5i,3j5w,4kd9,4kfi,3j56,3j5a,4kiz,1vvm,3j58,1vxl,4k0m,4btd,4kjb,2wdj,1qvf,1vq7,1vqo,2wrj,2qao,3j12,1vql,2v49,2qbi,2y11,2qbg,2y0x,3oat,1vp0,3ohz,3uye,2qox,1s1i,3v6x,4kbw,3oi1,2y13,4abs,2wdi,3oi3,3pyt,2qbe,3pip,1nji,3knk,3j0w,3cme,3uz1,3v29,3j5l,2x9s,2y15,1vou,2y0v,2x9u,2wrl,3kir,3hux,3ohk,2y0z,2qam,2j28,3uzh,2qba,1mji,2y19,1s72,3pyv,2qbk,3pyr,3e1d,3uz2,4a1c,1vow,4rbc,3j4x,3oh7,1yij,2y17,3pyo,2vhn,2gyc,1vqm,3uxr,3kni,4dha,3kit,2qa4,3d5d,2xux,3ccm,1m1k,1yi2,3f1h,3uzf,2i2t,1yit,3j37,1q7y,3i9c,3i9e,3tve,3j0t,1vqp,1vs6,1yl3,4a1a,1vqn,2zjp,3i1p,1vt2,4g5w,2i2v,3sgf,3j54,3fik,3i1n,1vs8,1k8a,3zvp,3i8f,1yjw,3f1f,1kd1,4a1e,1q81,1q82,3cma,3uos,3d5b,4a17,3cc4,2zjr,3i8i,1q86,3i56,1k73,3uz9,1vsp,3j0q,1k9m,2b9p,4nvx,1kc8,4bye,1yjn,3i55,3e1b,1jj2,3izu,3i22,3df4,1kqs,1vq4,3df2,3j11,3cxc,3ccl,3j14,3j0y,3kiw,1m90,3bbo,1vq8,3cf5,3tvh,4dhc,2qex,3i20,2otj,3kiy,3uz8,2xtg,2hgq,2hgu,3cce,3kcr,2z4n,2wdn,2otl,2wwq,2b66,3ohj,3o58,3knm,3oi5,2j01,3bbx,2wdl,3o5h,1vqk,1qvg,2qp1,2vhm,2gya,2z4l,3fin,2wh2,1yj9,2qoz,2wro,3oh5,2qov,4b8i,1vor,2wh4,2wrr,3uxq,1yhq,1vq5,2j03,2xqe,2v47,1w2b,1vq9,1vq6,1voy,2hgj,2b9n,4csu,2qbc,1vsa,4tpb,4rbi,4kx2,5aka,4w2d,4rb6,4tpf,3dll,4wap,4rbk,4tp7,4ulq,4tpd,4qs3,1vvq,4wwt,1vvy,4ujv,3g6e,4ujl,4qs1,4rbg,1vxq,4pec,4ul5,4ul0,4ujq,4tp5,1vxt,1vxn,3ccr,4qcv,4tp3,3ccu,4tov,3ccs,4w2b,4ulf,3g4s,3cpw,4wwe,1vw0,4uka,1vx9,3g71,4peb,4war,4kx0,1vxj,4tp9,4ujg,3ccv,4rb8,4tp1,4u67,4qct,4rbe,4ukl,4ukg,4l6j,3j01,1vvu,1vvw,3j8g,4uy8,4ulk,3pio,4qcz,4tom,1vvo,4qcr,3ccj" "PF00281.14" "392" "2.20" "1vq8.D_11-64.1vq8.pdb1.pdb"
"5a2t" "Flexi_CP" "rna" "Viral coat protein" "5a2t" "PF00286.15" "1" "5.60" "5a2t.Q_59-194.5a2t.pdb1.pdb"
"1k78" "PAX" "dna" "'Paired box' domain" "6pax,1k78,1pdn,1mdm" "PF00292.13" "4" "2.25" "1k78.I_84-140.1k78.pdb1.pdb"
"4s2x" "NUDIX" "rna" "NUDIX domain" "4s2y,4s2x,4jzv" "PF00293.23" "3" "1.50" "4s2x.A_8-151.4s2x.pdb1.pdb"
"1vq8" "Ribosomal_L3" "hybrid" "Ribosomal protein L3" "3ohz,3kcr,3pyt,3uzh,2y19,4kbw,3j0w,3uz1,1yij,3cd6,2y15,2j28,1vqo,4csu,3uxq,3oi1,2wdi,3oh7,3oi3,3j12,4abs,3kir,3j5l,2y11,2wrl,3hux,2v49,2y0x,4rbc,3j4x,2y13,2y0v,2y17,3pyo,2y0z,2wrj,3uye,3ohk,2x9u,3pyr,2wdj,1nji,2x9s,1s72,3knk,3pyv,3cme,1vvw,4qcv,4tpf,4qcz,4rb6,3dll,3g4s,4rbi,4qs3,4ujs,4wwe,4ulk,4ujq,4rb8,4kx2,3cce,3ccu,4ul7,4pec,4peb,3ccv,1vxt,4uln,4w2b,3ccr,4qcr,4uk2,1vw0,4ujv,4tpd,4uy8,5aka,4tp5,1vxj,4war,4tp3,4ukx,4ujg,3j8g,4tov,4tp9,3ccs,4ukn,4tp1,4tpb,4uls,3j01,4ulf,4wap,4ukg,4qct,4uks,3cpw,4tom,4w2d,4v19,4ujn,1vvo,4uka,3g6e,4ulc,4kx0,4rbe,4ul0,1vxn,4u67,1vvq,3pio,1vvu,4wwt,4ukl,4l6j,4ulq,4tp7,4uki,4rbk,1vvy,3ccj,4uk7,4ujl,4ul5,4ul2,3g71,4ujx,4rbg,4qs1,1vx9,1vxq,3uzf,3cf5,3bbo,1vsp,3uz2,3uz8,2otj,1vs8,3j0y,3e1b,1vq4,3i56,3i55,2xtg,3oat,3j11,2xux,3ccl,3j14,2vhm,2vhn,4nvx,4b8i,2b9p,3zvp,3f1f,3d5b,1yi2,1jj2,3v29,2z4l,2z4n,2qbk,2qov,2qox,3uos,3bbx,2qoz,2qp1,1yjn,3izu,2zjr,3cc4,1m90,2hgq,3ccm,1vou,1kd1,1qvf,2hgu,1qvg,2zjp,1vor,3tve,1kqs,1s1i,3fik,1vow,1k73,1w2b,3d5d,1yjw,1m1k,1vs6,1k8a,1vp0,4bye,1k9m,1voy,1kc8,3kiw,2qbc,1yl3,2qba,3kni,3sgf,1vqp,1yit,3e1d,3uz9,3kit,2qbi,2qbg,3j0t,3f1h,2qbe,3tvh,3df4,4ejc,2qao,2qam,2qex,3df2,2qa4,3cxc,3cma,3kiy,2gyc,2gya,3j5i,3ccq,4byc,3j56,4kfl,3j50,4kiz,1vvs,1vy3,3j5u,3j5e,4kdk,3j52,4kdb,3j5g,4kjb,1vy1,4uk0,4too,4ukq,4qcx,2xg2,4kj1,4kfi,4ce4,4kcz,3v6w,4kd2,4kj7,4kdh,4ukv,4l6l,4kj9,3j5w,4kix,4jux,3j3w,4ula,3j58,4nw1,4qcn,4qd1,4rba,3j7y,4kbu,1vvm,4k0m,4nvz,4nvv,4ulh,4btd,4qjs,4uji,3j51,4kj5,4hub,4uk5,1vw3,1vxl,4ukc,3j3v,4tox,3j5a,2zjq,3cc2,3j5o,4qcp,3j5k,3j7z,4kd9,3cc7,4k0q,2hgj,2j03,2b66,2wrr,2xqe,1vq5,2ogm,2v47,2otl,2wro,3ohj,3oh5,3oi5,2wdl,1vsa,3j5c,2wh4,2wwq,1vq9,2wh2,2j01,2wdn,2b9n,1vq6,1yj9,3knm,3fin,1yhq,3j44,1vqm,1vqn,3i22,3i1n,3i20,4ejb,3i1p,1vt2,3i8f,4dhc,3uxr,4dha,3v6x,3v23,3ofd,2awb,3ofq,4gar,3pip,4gau,3ofr,3og0,3j19,2i2v,3i8i,2i2t,3zn9,3i9c,3v2d,3v25,4ioc,3i9e,2xg0,3izt,3j37,4g5u,3ofz,3ow2,3mrz,3huz,1q7y,3o5h,1q81,3uzk,1q82,1q86,4b8g,3i1r,4io9,3r8t,3i1t,3o58,2aw4,3zne,4ioa,3r8s,3ms1,3j54,4kj3,4g5l,4g5n,1vq7,3orb,1vq8,3oas,3uzn,3v2f,3uyg,1vqk,1vql,3ofc,4g5w,3v27,3kno" "PF00297.17" "409" "2.20" "1vq8.B_45-312.1vq8.pdb1.pdb"
"1vq8" "Ribosomal_L11" "hybrid" "Ribosomal protein L11, RNA binding domain" "4csu,2qp1,1vs8,3cc4,3r8s,4ioa,2awb,1vqm,2qov,4io9,1vq9,1vqn,3oas,4kj3,2qoz,3j19,2qox,1vqp,4gar,3izt,1vql,1vqk,2b66,1vqo,3j5c,2z4n,1vq6,2z4l,2qao,4ioc,3r8t,1vq7,2qam,2qbi,1vq5,2otj,1vq4,3j37,2otl,3j16,3i1r,4gau,2qbe,1vq8,2qbc,2qbk,2b9p,2qex,2qba,2b9n,3j5l,2qbg,3j01,4tp9,4tp1,4tom,4war,3pio,4v19,3g71,4peb,4uy8,3ccu,4tpb,4tp3,3ccr,4tp5,4tov,3g6e,3cce,4qs1,4pec,4tpd,3ccv,4wap,4tpf,3g4s,4tp7,4qs3,3ccj,3ccs,3dll,5aka,3ofd,2wrj,1hc8,3i20,3izu,3pip,2x9s,3ofc,2j28,2zjp,3j12,3ofz,3cme,2x9u,2i2v,1vow,1vp0,1s72,1mms,3og0,2gyc,2wrl,3i56,1qa6,2zjr,1s1i,1yij,2vhn,3j54,3j0w,3oat,3i55,1vs6,1vor,2qa4,2wwq,1vt2,1c04,1yhq,2wh2,3j5w,3j7y,1y39,3kcr,3i1n,1yjn,3i8i,2wh4,1yj9,2i2t,2hgu,2hgj,3j44,3i1p,3o5h,3df4,2vhm,3fin,3df2,3ofq,3orb,3e1d,2aw4,1voy,2gya,3ofr,3e1b,3j0y,2xtg,3cma,3bbo,1yl3,3cd6,1yi2,3f1h,3j0t,3ccm,1yjw,2hgq,3cf5,3sgf,4kbw,3ccl,3j11,1yit,2xux,3j14,3uos,3fik,4kcz,3f1f,4kj9,3j52,4kbu,3j3v,4kd2,3j58,4kj5,3j5i,4kj7,3j7z,3cc7,4kd9,4kdk,3j3w,3j8g,3j56,4kiz,4kfi,4kdb,3j50,3j4x,3j5a,4kj1,3j5g,4kfl,4jux,4kjb,3j5o,3deg,3j5e,2zjq,4kdh,4kix,4qjs,4tox,3ccq,3j5u,3cc2,4hub,3j0d,4too" "PF00298.14" "215" "2.20" "1vq8.I_71-139.1vq8.pdb1.pdb"
"3r8f" "Bac_DnaA" "dna" "Bacterial dnaA protein" "3r8f" "PF00308.13" "1" "3.37" "3r8f.C_79-293.3r8f.pdb1.pdb"
"4rb7" "Ribosomal_S15" "rna" "Ribosomal protein S15" "1vxw,4rbj,4rbh,4ujz,4ujf,1vxi,4ul1,4ukf,1vvv,4rbd,4d5l,4ox9,3j80,4d61,4tp6,1vvl,4ujh,4uku,4wt8,4tpe,4pe9,4ulb,4uk4,4tp8,3j7a,4tp4,4aqy,5a2q,1vx8,4tp0,1vxp,4nvy,4ulg,4ulj,1vvp,4qcm,4tol,4uk6,1vvr,4uju,1vxm,4rbf,4qcw,5aj3,4uq5,4ujm,4uk1,4ukb,1vy0,4yhh,4ujw,4waq,4ukk,4ujp,4ul4,4tow,4qs2,1vwv,1vvz,1vvt,4qd0,4tpa,4kwz,1vvx,4wus,4wao,4ul9,1vxk,4qjt,4ukp,4ton,4ukr,4uk9,4qcs,4rbb,4ulm,1vvn,4ji3,4qcu,4w2a,4ulp,4ukw,1hnx,4w28,3j55,4ji4,4tpc,4ji6,3j4y,4lf9,4kdj,4kda,4ji0,4kzy,4kvb,3j6v,4qs0,4l6m,4lf8,4cr1,4kbv,4kj2,4gkj,4kfh,4kcy,1vy2,4lf5,3j4z,4adv,4kbt,4btc,4ji8,3j5b,4tou,4kj4,4kj0,4juw,4ji7,3v6u,4kdg,3j5t,4pea,4ji1,4tp2,4byb,4rb9,4byd,2xfz,4ukz,4jya,3j81,4qcy,4ujk,4l6k,4lfb,4ji2,4qcq,3j43,4cxc,4nxm,4ujr,4kj8,3j00,4b3m,4ji5,4b3r,1vx5,3j5f,4lfa,4kiy,4ul6,4uq4,4jv5,1vxz,4b3s,4b3t,4qco,3j4w,4kzz,1vx2,4khp,4ukh,4nvu,4kjc,4lfc,4a2i,4kd0,3v6v,3j4v,4lf7,1vw9,4kx1,4ulr,4rb5,4nw0,1vxs,3j5d,3j5n,4uer,4nvw,3zn7,4abr,3uzm,4kzx,3huy,3i1s,4g5v,4g5k,3uz4,3j57,4dr7,4rb7,4gd2,4ule,4eja,4dr1,3t1y,4bpn,4ej9,3t1h,3j20,4dr3,3j0x,3v28,1dk1,3uyf,4gaq,4kd8,3j18,4b8h,4bpo,4lf4,3j10,4dv0,3i1q,2xuy,4kja,4duz,3j36,3j5h,4gas,4dr5,4dr6,2avy,4k0p,4b8f,4dv6,3v22,3v26,3izw,4k0k,4dv5,4dr4,3v2c,4dv1,4k0l,3e1c,1kuq,3kc4,3uxs,3f1e,4dhb,3tvg,4bpp,3knj,3j0v,2uxb,2xsy,3j0z,4kj6,1xmq,3j5x,3fic,3kis,4kfk,2xg1,4dh9,3tvf,3v2e,3knh,2uxc,4w23,3j53,3uz3,3uzi,3e1a,3zvo,3jyv,4dv2,4nxn,3uyd,3sfs,3uzg,3uz7,3j13,3bbn,2qnh,3fih,3uzl,1pnx,2qow,3pys,4dv4,4dr2,2wrk,3uoq,2qb9,2xzn,3pyu,2z4k,2qbf,3oge,2uua,3j0u,1voz,2b64,2vho,3ofx,3ofy,3or9,3kiu,2i2u,2y10,2y0y,4dv3,1hnw,2wdk,1s1h,3i9b,2qbb,3d5a,3i21,2qan,1n36,1j5e,2qbj,3oar,3kix,3f1g,2x9r,2y18,2y0u,2y12,2y16,3pyn,3pyq,3oi4,4gd1,1fjg,2wdm,4dv7,1n32,2hgp,3knl,2uuc,1hr0,1g1x,2xzm,2aw7,3ofb,2b9o,2hgi,1ibk,3i1z,2f4v,1f7y,2y0w,2qbh,2gy9,4bpe,4ukm,3j59,2wrn,3o2z,3ohd,1yl4,3df3,3mr8,1i94,3i1o,2j02,3znd,2vhp,1vs7,2xqd,3d5c,4gkk,3ohc,1voq,1n33,2uub,2x9t,2uu9,2qal,2qp0,3oto,1n34,3ogy,2zm6,3ohy,2wh1,1ysh,2ykr,2qou,2e5l,2vqf,2v46,2y14,1xmo,1xnq,2wdg,1vox,2hgr,2i2p,2v48,4duy,3kiq,3df1,3oi2,1pns,2wh3,2j00,3i1m,1ibl,3uz6,4g5t,3oi0,3ofa,1vov,3jam,3ora,3oaq,3ofp,1fka,3i8h,2wri,2uxd,2z4m,3ofo,3j5j,3i9d,3knn,4lf6,1hnz,2ow8,1xnr,1vos,2qbd,2wdh,2wrq,2vqe,2gyb,2hhh,3huw,2b9m,3v24,2wwl,3ms0,3izv,4g5m,3i8g,1vs5,2qoy,4w2c,1ibm,3uxt" "PF00312.17" "446" "2.40" "4rb7.O_6-88.4rb7.pdb1.pdb"
"2hax" "CSD" "dna" "'Cold-shock' DNA-binding domain" "4qqb,4alp,2hax,4a75,3trz,4a76,3ts2,2es2,3pf4,3pf5,3ts0" "PF00313.17" "11" "1.29" "2hax.A_2-66.2hax.pdb1.pdb"
"4rb5" "Ribosomal_S2" "rna" "Ribosomal protein S2" "3uz3,3knn,2wdk,3fih,2y18,1hnw,1hnz,1j5e,2y12,2wdg,2gy9,1vos,2wh3,2wdh,3j5x,2wh1,2gyb,2wdm,1n32,2y16,4dr2,2e5l,1n33,1ibm,1ibl,1i94,1ibk,2zm6,2avy,2uu9,2uua,2f4v,3e1c,3knh,2v46,2qnh,2uuc,2uub,3f1e,3knj,3uz6,1xmo,3e1a,3sfs,3i9b,1pns,1vox,1voz,3i9d,2hgi,3i8g,2j02,4gd1,3jam,2x9t,2x9r,3zn7,4bpn,3i8h,1voq,3uyd,1yl4,1vov,1fjg,1pnx,4dh9,2y0w,2xzm,1xnr,1xmq,3huw,3uzi,2xzn,4k0p,2uxc,2y0y,3jyv,2j00,4kja,1xnq,2y0u,4g5t,3j53,2xg1,1vs7,2ykr,4lf4,3j43,3df1,2z4m,2qoy,2qal,1vs5,2qbd,3oaq,1n34,2qou,2vqf,3df3,3znd,4uer,4tou,4ji1,4kbv,4ukh,4nvw,4ukz,3j5j,3j4w,4lfc,4nw0,3j4z,4lfa,3j5n,3j5d,4ji4,4btc,4kj4,1vxz,3j5f,4ji8,4b3s,4b3t,4ulr,4ujr,1vvx,4ul6,3v6v,4jya,3j00,1vy2,3j6v,4kzy,3j4y,4juw,1vx5,4kiy,4byb,4kzx,4kjc,4b3r,4lf9,4l6k,2xfz,4w2c,4byd,4w28,3j5b,4lf8,4qco,4rb7,4ujk,4qs0,4nxn,4kj8,4ji6,4lf6,4jv5,4w23,3j4v,4rb5,4uq4,4kbt,4qcq,4ji5,4cr1,4nxm,4gkj,4kcy,4l6m,4kfh,1vw9,4lf7,4kzz,1vx2,1hnx,4ji0,4kd8,4lf5,4lfb,3j5t,4bpo,1vxs,3j55,4tpc,3j5h,4kx1,4kvb,4kj0,4kj2,4kdg,2uxb,4pea,3v6u,4cxc,3j59,4kda,4ji2,3j57,4adv,4khp,4kd0,4rb9,4a2i,4ji7,2wrk,4dv2,3o30,2wrn,3huy,4duy,3v22,4k0l,4kj6,3i1z,3j0u,3izv,4gaq,4dr5,1n36,3i21,3o2z,4gas,3pyu,2vhp,2i2p,2vho,4duz,4dr1,3oto,3oar,4dv5,3j36,3pys,3pyn,2wri,4gkk,3j13,2qp0,3i1q,4dr3,4dv3,4kdj,2wwl,3v2c,3izw,3mr8,4dv0,4b3m,3uyf,2hhh,2wrq,2i2u,3d5a,3bbn,2y10,4dr4,2y14,2xuy,3v24,3i1s,2xsy,4bpe,2xqd,2hgr,3j20,2hgp,4dv6,3tvg,3tvf,3t1h,4ej9,3fic,4dr6,4dv4,3i1m,3uxs,3uz7,3uzg,4b8f,2uxd,3uz4,2b9m,3ms0,3d5c,2v48,3uzl,3i1o,3j10,4eja,3kis,3ofb,3v2e,3ogy,3j0z,4b8h,3j18,4dr7,3v28,3j0x,4g5k,3uzm,4ule,3kiq,3ofo,3ohd,3ofa,3ofp,3ofy,4dhb,4g5v,3kix,3oi0,3or9,1hr0,4dv1,4gd2,3oge,3t1y,4k0k,3oi2,3zvo,3oi4,4kfk,3kiu,4abr,3ohc,4bpp,3ohy,3v26,3j0v,3kc4,3ofx,3ora,4qs2,3j80,1vxi,4ul4,4tp6,1vvn,4d5l,4ul9,4tpa,4ton,1vvt,1vvz,4ulm,4uk4,4ujp,4ukk,4uk9,1vxm,4waq,4ukp,4uku,4ujw,4ulp,4yhh,4d61,4ukb,4w2a,4tp4,4ji3,1vvl,4rbf,4ujz,4ukr,1vvp,4tp0,4rbd,4aqy,4qjt,1vxk,4ujf,4ukf,4tol,1vvr,4uk6,4uju,1vx8,4ukw,4ujh,4ulb,4ulj,4tow,4ujm,4tp8,4wt8,3j7a,1vxp,4pe9,4ulg,5aj3,4nvy,4tp2,4rbb,3j81,4tpe,4ul1,4qcw,4uk1,4rbj,4rbh,4qcs,4qcy,4uq5,4qcm,4wus,1vy0,4ox9,5a2q,4qd0,1vxw,4kwz,4wao,4qcu,1vwv,1vvv,2qan,1s1h,3uxt,2qb9,2aw7,2qbb,2b9o,4g5m,3knl,2qow,2z4k,2qbf,2qbj,2ow8,4ukm,2b64,2qbh,4dv7,4nvu,3f1g,3pyq,2vqe,3uoq" "PF00318.15" "441" "2.40" "4rb5.B_10-226.4rb5.pdb1.pdb"
"1egw" "SRF-TF" "dna" "SRF-type transcription factor (DNA-binding and dimerisation domain)" "1egw,1hbx,3p57,1n6j,3kov,1tqe,1srs,1k6o,1mnm,3mu6" "PF00319.13" "10" "1.50" "1egw.B_9-59.1egw.pdb1.pdb"
"4hc9" "GATA" "dna" "GATA zinc finger" "3vek,3vd6,3dfv,4hca,3dfx,4hc7,4hc9" "PF00320.22" "7" "1.60" "4hc9.A_264-298.4hc9.pdb1.pdb"
"1zrf" "Crp" "dna" "Bacterial regulatory proteins, crp family" "1o3q,2cgp,3n4m,1lb2,3iyd,1o3s,1o3r,1o3t,1j59,1zrf,1cgp,1zre,1zrd,1ruo,1run,1zrc" "PF00325.15" "16" "2.10" "1zrf.A_165-196.1zrf.pdb1.pdb"
"1vqo" "Ribosomal_L30" "rna" "Ribosomal protein L30p/L7e" "1vq8,3uzh,3d5d,1s1i,3i20,1vqo,2qox,1k73,3kit,1k9m,1vp0,2qbi,3og0,3i55,1vow,4qd1,2vhn,1kc8,3izu,3hux,3pyt,3pyr,3uye,2qbe,3pyv,3i56,2qbk,4qcn,3cxc,1k8a,2qbg,3cme,1s72,1vou,3i22,3pyo,3uz1,1qvf,1vq7,2qao,2zjr,2j28,1yl3,3ofz,3uz2,3v29,3ofd,3pip,3r8t,3i9c,2qba,2qam,2gyc,1vqp,3j0w,3mrz,1q7y,3ofc,3ms1,3knk,1q86,2i2v,3ohk,3oi5,3ohz,2wdn,3oi3,3ohj,3oas,3oi1,4b8g,3uyg,3j5c,4g5n,4b8i,3izt,4ejb,3uzn,2awb,3huz,2wro,3v6x,3v25,3r8s,3i1t,3v23,4ejc,4g5u,2j03,4abs,4gau,3j37,2wdl,3zn9,2zjp,4ioc,2wdj,4io9,2wh2,3cf5,2y15,2y13,2y11,2xg0,2y0z,2y0x,3uzk,4ioa,2y0v,4kj3,4gar,2xux,3fin,2xtg,2xqe,3zne,3kno,4g5l,3ow2,3ccm,3oh7,2wh4,2wrj,2wrr,2y17,2wrl,2y19,3oh5,4kbw,3cpw,4u67,4uka,4wap,4peb,4war,4uk2,1vxj,4tpb,4wwe,1vvo,4ukg,4qcz,5aka,4uls,4qcr,4qs3,4ujs,4uks,4tpd,4w2b,4tpf,4tom,3j01,4ul7,3ccj,3dll,4rbi,4uki,3g71,3j8g,4ukl,4ukn,4qs1,4tov,4ujn,4ujl,1vx9,4l6j,4tp9,4ul0,4v19,3ccs,3ccv,4w2d,1vxq,4ulk,4ujg,4ukx,1vw0,4ulc,4rbg,4rbk,1vvq,4uk7,1vvw,4kx0,4ujq,4rb8,4wwt,4rbe,4ul2,4ulf,4ujx,4qct,4tp5,3pio,1vvu,4pec,4kx2,4uln,4ulq,4rb6,1vxn,4tp3,4tp1,3g6e,4uy8,4qcv,3cce,4ujv,3ccr,4tp7,4ul5,3g4s,1vxt,1vvy,3ccu,1jj2,3d5b,1vqm,1kqs,1qvg,2hgu,1vs6,3kiw,2otl,1yjn,3j5l,1vqk,3uxr,3i8f,2qov,3i9e,1vql,1yhq,3j12,1q81,2b9n,2qa4,3uxq,2qp1,3kcr,1vs8,2z4n,2b66,3uz9,4g5w,3o58,2gya,2i2t,1yij,2hgj,2qbc,2vhm,1nji,1w2b,1vq6,3kir,3bbx,1yj9,2z4l,2hgq,4dha,3i1p,1vt2,3i1n,3kiy,2qoz,2aw4,1kd1,3cd6,3df4,3ofq,3orb,1q82,1m90,1vq5,3oat,1vq9,3df2,1m1k,3cc4,3knm,3o5h,3i8i,3ofr,1vor,1voy,1vsa,3j5w,3ccq,3j51,3j5o,3j4x,4kdk,3j52,4kj7,3j5a,4qcx,3j5e,4kix,4l6l,4byc,3j58,4ukv,4kdb,4k0m,3j5k,4btd,4csu,3v6w,4nvz,1vvm,3j50,4qjs,3j3v,4kfi,3j54,4kcz,4kj1,4ula,4k0q,4uk0,3j5u,4ulh,3j56,4kj5,3j44,2zjq,4nvv,3cc7,4nw1,4kbu,3j5i,4kjb,2xg2,3j7y,3cc2,4uji,4kiz,4tox,4jux,1vy1,4hub,4kfl,4kd2,4uk5,4kdh,3j5g,1vy3,4rba,4rbc,4kj9,4qcp,4too,1vxl,4ukq,4ce4,1vvs,4ukc,3tve,3j0t,3f1h,1vqn,3v27,3ccl,3uzf,1yi2,3e1d,1yit,3tvh,2j01,3i1r,2wdi,3j7z,3j14,3j19,3e1b,3uos,2otj,4kd9,4bye,2b9p,3uz8,3fik,4nvx,3cma,3v2f,3j0y,2x9u,2wwq,2x9s,1vsp,2v49,2v47,1yjw,3kni,1vq4,2qex,3sgf,3f1f,3zvp,3v2d,4dhc,3j11" "PF00327.15" "405" "2.20" "1vqo.W_1-52.1vqo.pdb1.pdb"
"3snp" "Aconitase" "rna" "Aconitase family (aconitate hydratase)" "3snp,3sn2" "PF00330.15" "2" "2.80" "3snp.B_54-564.3snp.pdb2.pdb"
"4rb7" "Ribosomal_S5" "rna" "Ribosomal protein S5, N-terminal domain" "4uk9,4tp4,4ulb,4ukf,4uk1,1vvl,1vxi,4pe9,1vvr,3j80,3j7a,4uju,4wus,4ujp,4wao,4rbf,4aqy,4tp0,4waq,4d5l,4ulp,4qcs,5aj3,4ujw,4d61,4qcm,4uk4,4w2a,4qcw,4yhh,1vvn,4wt8,4ul1,1vy0,1vx8,4ukb,4ujh,4ton,4tp8,4ji3,4qjt,1vxk,1vwv,4ul4,4qs2,4tpe,4kwz,5a2q,4ujz,4ukp,4uq5,4ulj,4qcu,4ujm,4qd0,4ukr,4uk6,1vxw,4rbd,4tpa,4nvy,4tp6,1vvv,1vvz,4rbj,4rbb,4uku,4rbh,4ox9,4ulg,4ukk,1vxm,1vxp,4tol,4tow,4ulm,4ujf,1vvp,4ukw,1vvt,4ul9,4uer,2vqe,3knl,3pyn,3i9b,2y12,2y16,3kix,2uuc,4k0k,2vho,3d5a,3pyq,4dv7,4dv4,1pnx,3pys,3pyu,3j0u,1j5e,3zn7,2wdg,2wdm,2y0w,3uoq,2ykr,2y18,1voz,3oge,2i2u,3i1z,2aw7,2gy9,1hnw,1fjg,2y10,2uua,3ofy,2f4v,3oaq,2b9o,2x9r,3or9,3ofx,4duy,4ukm,3f1g,2y14,2y0u,3ofb,3oi4,2wdk,4bpe,1s1h,2b64,1ibk,3i21,3uxt,2hgi,2hgp,2y0y,4abr,3j20,4gd2,4dv5,4dv1,4kj6,3j10,4kfk,4dv6,3uzl,4dr6,3v26,4dr3,4duz,4ej9,4dr1,4gaq,3knn,3v24,3i1s,4g5k,4dr7,3t1h,3j5j,2xuy,3zvo,2uxd,4ule,4gas,4eja,2v48,3j43,4b8h,4dr5,3v22,3izw,4kd8,3v2c,4b8f,4kja,3uz4,3i1q,3o2z,3j0x,3uyf,4dv2,3o30,3t1y,4dv0,3oar,3j18,2avy,3huy,4bpn,4k0l,3uzm,3v28,4dr4,4g5v,3uzi,2xsy,3f1e,3fih,4bpp,3e1a,3tvf,3uyd,3izv,3j13,4lf6,3e1c,3fic,4gkk,3sfs,3j53,4nvu,4dh9,4dhb,3tvg,2uxc,3kis,3uxs,1hr0,2wrq,3uz7,3uz6,2wrn,2wrk,3bbn,2wri,3kc4,3j0z,4k0p,1n36,2qow,3j5x,4dv3,2wdh,3df1,3df3,2z4m,2qnh,2xzn,1yl4,1vs7,1vs5,3v2e,2xzm,2xqd,1xmq,3kiu,1n32,2qbd,2qbh,3knh,2qp0,2qbj,3huw,3jam,2qb9,2xg1,2qbb,2qbf,3knj,2qou,2z4k,3uz3,4dr2,3j0v,2qan,3uzg,2qoy,4gd1,3jyv,2qal,4ji4,4a2i,4bpo,3j59,4qcy,4kx1,4kj0,3v6v,4b3t,3j4v,4b3r,4w2c,4cr1,1vvx,4kdj,1vxz,4ujk,3j4y,3j5n,4ukh,4btc,4kiy,3j5d,4kdg,4ji2,4cxc,4kj8,1vx5,4b3s,4lfb,4lf5,4nw0,4ul6,2uxb,4ukz,4ji1,4lf8,4kzz,3j55,4lf9,3j6v,1vx2,4ji7,4lf7,4ujr,4gkj,4kvb,3j57,3j5h,4kzx,1vxs,4qcq,4rb5,1vw9,4nxm,4ji5,4w23,3j5f,4rb7,2xfz,4uq4,4nvw,4kbv,4kd0,3j00,4rb9,4khp,4nxn,3j81,4tou,4lfa,4kj2,4kjc,4qco,4kbt,4tp2,4jya,1hnx,4qs0,4kda,4l6k,4ulr,4juw,3j4z,3j5t,4byd,4lfc,3j4w,4kcy,4ji0,4kfh,4tpc,4ji8,4kzy,3v6u,1vy2,4byb,4kj4,4l6m,4pea,4jv5,4adv,3j5b,4w28,3ohd,3i9d,3ofo,2j00,1vos,3ofp,3znd,2v46,1ibl,3ms0,4lf4,4b3m,3ohy,2vhp,1n34,2wwl,3i1o,2i2p,3oto,3oi0,2hgr,2uu9,3ofa,1xnr,2e5l,3kiq,1i94,1vox,2j02,3ogy,1ibm,1n33,3i1m,2x9t,4g5t,2b9m,1voq,3d5c,2uub,1hnz,1xmo,3i8h,3ohc,4g5m,3j36,2wh1,2zm6,3oi2,2vqf,2wh3,4ji6,1xnq,3mr8,3ora,2ow8,2hhh,1vov,1pns,3i8g" "PF00333.15" "440" "2.40" "4rb7.E_5-71.4rb7.pdb1.pdb"
"3r2d" "Ribosomal_S10" "rna" "Ribosomal protein S10p/S20e" "2e5l,3ohc,3df3,4duy,2qoy,2hhh,3oto,2i2p,2v46,3izv,1xnr,2z4m,2uxd,2qou,3i9d,1vs7,2y14,1pns,3d5c,1vox,3ofo,2uub,3oi0,2wdg,3j5j,1hnz,2wh3,3ofa,1ibl,2zm6,1vov,2b9m,2qal,2wri,4g5m,2v48,2ow8,2qbd,3uz6,3i8g,3ora,1vs5,3huw,3jam,2vhp,2qp0,2vqf,1n33,3mr8,2wrq,2j02,1voq,2wh1,3ms0,2j00,3r2d,3uxt,3i1m,3oi2,3znd,3i8h,3ohd,1ibm,2wwl,4lf4,3knn,2hgr,3ogy,1i94,2xqd,2ykr,1xmo,1n34,2x9t,2uu9,3kiq,1xnq,3ohy,3df1,3ofp,1vos,3i1o,2gyb,3oaq,4lf6,4g5t,2y10,3o30,3o2z,4dv4,3pys,1pnx,2z4k,2gy9,3i1z,2f4v,2vho,2xzn,2wrn,3j0u,2qbf,2uuc,3ofb,3knl,4dv7,2xzm,4gd1,2vqe,2hgp,3pyq,2qbh,2wdm,1voz,4w23,3oge,2aw7,2b9o,3oi4,1ibk,1hr0,2y0w,1fjg,2hgi,1n36,2wdh,2wdk,2y12,2y16,3or9,3oar,2qan,2y18,3kiu,4dr2,2qbb,2y0u,3f1g,3ofx,3pyn,2qow,3d5a,3i9b,3kix,2y0y,2x9r,1s1h,4nvu,4dv3,3ofy,2b64,2uua,3pyu,3i21,2wrk,2qb9,2i2u,1hnw,3zn7,3j20,3uoq,2qbj,3fic,4ukm,3v24,1j5e,4rbd,4d61,4waq,4uku,4ukp,5a2q,4qd0,4ukk,4uk4,4ujf,4qcs,4qcm,4ul1,4tpa,4uk6,4tp4,1vvv,4qcw,1vxw,4tp8,4tow,4ul4,4kwz,4ujz,4pe9,1vxi,4ul9,1vvl,4rbf,3j80,3j7a,4qjt,1vvz,1vvt,1vvx,4ulg,1vxp,4tol,4rbb,4ujh,4ukf,4ukw,1vvr,4uju,4ujp,4ox9,4qcu,4tp6,1vxk,4uq5,4rbj,4ukr,4nvy,4d5l,4qs2,4ulj,4uk9,1vwv,4ulm,4ujm,1vxm,4uk1,4yhh,1vy0,4ton,1vx8,4ulb,4wao,4tpe,4w2a,4aqy,4ulp,5aj3,4wt8,4ji3,4ujw,1vvp,4ukb,4wus,4rbh,4tp0,1vvn,4uer,3j55,3j5f,4rb5,3j5t,4rb7,2xfz,4kda,4ji7,4lf9,4ji0,3j57,4nvw,4kj4,4kx1,4ujk,4lf5,4qcy,4lfb,4tpc,1hnx,1vw9,4ul6,4kbt,3j4z,1vy2,4kjc,4kbv,4ji4,4tou,4b3m,4khp,4ujr,4qco,4kj2,1vxz,4adv,4kd0,3j43,4kfh,4ji1,4ji5,4l6k,4ji8,4nxm,4pea,3j00,4lf8,2uxb,3v6u,4juw,4rb9,4lfa,4ji2,3v6v,4l6m,4gkj,3j4w,4kj8,4ji6,4ukz,3j4v,4a2i,3j5d,4uq4,4ulr,3j81,4cr1,4b3s,3j5n,4w28,1vx5,4cxc,1vx2,3j4y,4kiy,4qcq,4b3t,4btc,4byd,4kzy,4lf7,4lfc,4kvb,4kcy,4b3r,4qs0,4nw0,4tp2,3j6v,3j5b,4kdj,4kj0,4jv5,4byb,4jya,1vxs,4kdg,3j59,4ukh,3j10,4bpo,4dv6,4dr7,4k0p,4gd2,3j0x,4kd8,3uyf,3uzm,4abr,2xg1,3t1y,4gaq,4dv5,4eja,4dv0,4g5k,3uz4,4dv1,3t1h,3v28,3i1s,3fih,2xuy,3v2c,4k0l,4dr6,4gkk,4dr5,4duz,4kja,4kfk,3v22,4kzz,4dr3,4w2c,3j18,3j36,4b8h,4kzx,4gas,2avy,4dr1,3izw,4ule,4dr4,4g5v,4b8f,3v26,4bpn,3huy,3i1q,4ej9,4bpe,4nxn,3zvo,2uxc,3v2e,3uxs,3jyv,3uzi,4kj6,2xsy,3e1c,1n32,4k0k,3kis,4dhb,3j0z,3tvg,3tvf,3uyd,1xmq,3sfs,3j5h,3uz7,3knj,3j53,1yl4,4dh9,3f1e,3kc4,3uzl,3bbn,3j0v,3e1a,4bpp,4dv2,2qnh,3j13,3j5x,3knh,3uz3,3uzg" "PF00338.17" "442" "2.20" "3r2d.J_47-81.3r2d.pdb1.pdb"
"4hqu" "PDGF" "dna" "PDGF/VEGF domain" "4hqu,4hqx" "PF00341.12" "2" "2.20" "4hqu.A_16-99.4hqu.pdb1.pdb"
"2wwb" "SecY" "rna" "SecY translocase" "3kcr,3j01,3dkn,2wwb,3bo1,2wwa,3bo0,2ww9,3j45,3j46" "PF00344.15" "10" "6.48" "2wwb.A_75-459.2wwb.pdb1.pdb"
"1vqo" "Ribosomal_L6" "rna" "Ribosomal protein L6" "4qcx,3v6w,4too,4byc,1vvm,3j56,4btd,3j5a,4kfl,4kd2,3j50,4ula,4uk5,4kj9,4kd9,4kdh,4ukq,4kiz,4tox,4qjs,4kdk,4kcz,4uk0,3j5e,4rba,4kdb,1vy1,3j5k,4ukv,4nw1,2xg2,4kjb,3j58,4nvz,3j5i,2zjq,1vxl,2xg0,4kbu,4nvv,4qcp,4hub,1vy3,1vvs,3j5g,3j5u,3j3w,3j5o,4kix,4k0q,4kj1,4uji,4jux,3j5w,3j51,3j7z,4ukc,3j3v,4k0m,3cc2,4kj7,3j4x,4ulh,4l6l,3j52,4qd1,4kfi,4kj5,4qcn,3cc7,1yhq,1m1k,2v47,3ohj,3v6x,1voy,1vt2,2b66,3oi5,3i8i,1vqk,1vq9,3orb,1vqm,1kd1,3i1p,2wwq,2hgu,1kqs,3kcr,2otl,3bbx,2hgj,2qp1,2wro,3uxq,1vql,2wdn,1qvg,2xqe,2j03,3o58,3oh5,3i8f,3i9e,2b9n,1vq6,2qov,4b8i,3fin,1yj9,1yjn,2wh2,1w2b,2z4l,1vsa,3e1d,2qoz,2j01,1vs6,3ofr,1vq5,1q81,4csu,2wrr,2i2t,2wdl,2wdj,1q82,1jj2,2wh4,3i1n,2qa4,3df4,3knm,1vor,3df2,2gya,2z4n,2qbc,3o5h,3kiw,3ofq,1m90,2vhm,3zn9,3huz,4kj3,4gau,3j5c,3i1t,4gar,3r8t,4ioc,3v2d,3v23,2awb,2aw4,3v2f,4ejb,3zne,3j19,3cd6,3j44,3v27,3og0,4ioa,3ow2,4g5u,3uyg,3izt,3ofz,4g5l,3uzn,4g5n,3oas,3v25,4kbw,4ejc,4b8g,4io9,3j16,3r8s,3uzk,3kno,3i1r,3ofd,4rbk,3ccu,4tpb,4ukn,4tov,3ccs,4ukx,4rbg,4w2d,1vxq,4qcr,4ul7,4tp3,4ujl,4tpd,1vvq,4uy8,4qcz,4tom,4qs3,5aka,4kx2,4tp5,1vxt,3g6e,4uks,4ukg,3j01,4tpf,4ujs,4wap,4pec,4ul5,1vxn,4qcv,4ujv,4ulq,4tp7,3g4s,3ccr,1vvy,4w2b,3ccq,4uln,3cce,1vvo,4ulf,4wwt,4ujn,4uka,3j8g,4ukl,4uki,4rbe,4rbi,4tp9,4ul0,1vx9,3dll,4l6j,4qct,4uk2,4ujg,4peb,4war,1vw0,4wwe,4ulc,4rb8,3g71,1vvw,4kx0,4uk7,4ul2,4uls,4rb6,4u67,3ccj,3cpw,3ccv,4ulk,4tp1,4ujx,4qs1,4ujq,1vvu,3pio,1vxj,1yjw,1vsp,3tvh,3e1b,3cma,3kit,3uz8,3kni,1yit,1vqn,3j0t,2b9p,2i2v,3cc4,3j14,3d5d,3j11,3zvp,2hgq,3fik,3d5b,1vq8,4dha,3cf5,3uxr,3f1f,4dhc,4g5w,3f1h,3ccm,3uos,2qex,2xtg,4bye,2xux,1vq4,3tve,3i9c,2zjp,3i22,3ccl,1yl3,3sgf,3i20,2otj,4nvx,3j37,3bbo,1vs8,3oat,1q7y,1yi2,3j0y,3uzf,1vqp,3uz9,2qox,1vq7,2vhn,3cme,3cxc,1kc8,3oi3,3ohz,3j0w,2x9u,3hux,3uz1,2qbi,1k8a,2j28,3izu,2v49,2qbe,3i55,1k73,2qam,3v29,1qvf,3j54,1k9m,1vqo,3pyr,4abs,3ohk,2gyc,2qba,1s72,3i56,1s1i,1nji,2wrl,2wdi,2y17,3kiy,1vow,1yij,1q86,3mrz,3pyt,2zjr,2y0x,2y0v,3ms1,2y0z,4rbc,3pip,2qbk,3kir,2qao,1vou,3ofc,2y15,2qbg,2wrj,3pyo,3j5l,3knk,1vp0,2y13,2x9s,2y19,3j12,3oh7,3uz2,3uzh,3oi1,3pyv,3uye,2y11" "PF00347.18" "405" "2.20" "1vqo.E_7-79.1vqo.pdb1.pdb"
"1qna" "TBP" "dna" "Transcription factor TFIID (or TATA-binding protein, TBP)" "1c9b,1qn3,1ytb,1qn8,1ngm,1rm1,1qne,1cdw,1qnb,1nh2,1nvp,1vto,4wzs,1vol,1qn9,4v1n,1qnc,1d3u,1vtl,1qn7,1ytf,1qn6,1qn4,1qna,1qn5,1ais,1tgh,1jfi,4v1o" "PF00352.16" "29" "1.80" "1qna.A_110-196.1qna.pdb1.pdb"
"1qpz" "LacI" "dna" "Bacterial regulatory proteins, lacI family" "1zay,1pnr,2pug,2puf,2pub,2pua,2puc,1bdh,1wet,2pe5,1jfs,1bdi,1jh9,1jwl,2pud,2pue,1qp0,1qp4,1vpw,1qpz,1qqa,1qqb,1jft,1qp7,3oqm,1rzr,1zvv,3oqo,3oqn,1efa" "PF00356.16" "30" "2.50" "1qpz.C_3-48.1qpz.pdb1.pdb"
"4rb5" "Ribosomal_S17" "rna" "Ribosomal protein S17" "3df1,2wwl,2ow8,2v48,1vos,3i1m,1n34,3huw,1xnq,3ohd,2j02,3znd,3ms0,2uxd,2vhp,1ibm,3mr8,4g5m,1hnz,2hhh,1xmo,3ogy,4w2c,3oaq,2vqe,4k0k,3uz6,2b9m,3uxt,3j13,2qp0,3ofo,2qoy,3ohy,2zm6,4duy,4lf4,3izv,3i8g,4g5t,3oi0,3ora,2qbd,2i2p,2z4m,2wh1,3ofp,2j00,2ykr,3ohc,2vqf,1ibl,1i94,2v46,2qal,2x9t,1n33,3i1o,3jam,2qou,1voq,2wrq,2uu9,3knn,3i8h,2gyb,1vox,1vov,1xnr,3oto,1pns,3i9d,1vs7,2wri,3v24,2wh3,2xqd,3kiq,2y14,2hgr,3j5j,3oi2,1yl4,4gkk,1vs5,3ofa,2uub,3d5c,2e5l,2wdg,2wdh,3df3,4dr3,2xuy,4gas,4kzx,4dr6,4bpn,4dv0,4g5k,3v2c,3j36,3huy,4duz,4dv1,4dr1,4dr4,4nvw,4k0p,4kja,4dv6,3v26,3v22,4dv5,2avy,4ji7,3j20,4ule,4rb7,3t1y,3i1q,3izw,3uzm,3j57,4dr7,3i1s,4b8f,3j0x,4eja,3j18,3t1h,4abr,4gd2,3uz4,3uyf,4g5v,4gaq,2xg1,4b8h,4bpo,4kd8,3j10,3v28,4ej9,1vx5,4cxc,3j81,4jya,1vy2,4tp2,4tou,4a2i,4kbt,3j59,4ukz,4kbv,4rb9,4kzy,4pea,1vxs,4nxn,1vw9,4l6k,3j5f,4kx1,4tpc,4adv,4kj2,4ji4,4qs0,3j4v,4w28,4nvu,1hnx,4kda,4ukh,4juw,1vxz,4b3m,3j4w,4nxm,3j4z,4lfa,4lfb,3j5t,4lfc,3j43,3j4y,4b3t,4byb,3j00,3j55,4lf9,3j5b,4lf5,4w23,4btc,4qcq,4ji5,4qco,3v6v,3v6u,2xfz,4ji8,4ujr,4ujk,4kzz,4lf8,4kiy,4ji1,4qcy,4uq4,4khp,4byd,4kj0,4kjc,4ulr,4kcy,4b3r,4kj4,4rb5,4lf7,1vx2,4ji0,3j5h,4jv5,4ul6,4cr1,4l6m,4kd0,4ji2,4kdg,4kdj,4b3s,4kj8,4gkj,3j6v,3j5n,4lf6,4nw0,3j5d,4kfh,4ji6,4uer,4dv2,3knh,3uzl,4k0l,3f1e,3uzg,3j5x,4kfk,3bbn,3j53,3e1a,3knj,3fih,2xsy,3j0v,3v2e,3kc4,3uxs,3uzi,4bpp,1xmq,4dhb,3kis,2uxb,3fic,3e1c,3tvg,3jyv,4kj6,3tvf,3sfs,2qnh,3uz7,3j0z,4dh9,3zvo,3uz3,3uyd,2uxc,2qbj,2qan,2b64,2gy9,2y12,3knl,2f4v,1hnw,1ibk,3ofy,3or9,2y0w,3pyu,2x9r,2wdm,1n32,1pnx,3zn7,2y18,2y0u,3pys,2aw7,3oar,3kiu,3o30,4dv4,2qbb,3d5a,1j5e,3uoq,2uua,2qb9,2z4k,2qbf,2qbh,2wdk,3i21,3i1z,1s1h,3pyn,2xzm,4dv3,3oge,3j0u,3pyq,3kix,4bpe,2xzn,2vho,2y10,4ukm,4dr2,2y16,3o2z,3ofx,3i9b,2b9o,4dv7,4dr5,2y0y,2hgi,2hgp,1n36,2wrn,3f1g,4gd1,3oi4,2uuc,2wrk,2i2u,2qow,3ofb,1hr0,1fjg,1voz,4d61,4ton,1vvz,1vy0,3j80,5a2q,4ujf,4kwz,4uk4,4ul4,4uku,4ujh,4waq,1vvx,1vxp,4rbj,4qjt,4ujz,4tol,4ulb,1vx8,4qcm,4uk1,1vvv,4aqy,4ukw,4tp4,4ukk,4uk9,4rbb,1vvp,4ul1,4tpe,4ji3,1vvn,1vvt,4ukb,4rbh,4qcu,4tp8,4ukf,4ujp,4pe9,4w2a,4tow,4qcs,4uq5,4ox9,5aj3,4d5l,4rbd,1vxm,4qs2,4ulm,3j7a,4ulj,4tp6,1vxk,4ulp,4uk6,4wt8,1vxi,4ujw,4ukp,4tp0,4ujm,1vvl,4ukr,4nvy,1vwv,4tpa,4rbf,4ul9,4ulg,4wus,4qd0,1vvr,1vxw,4qcw,4wao,4yhh,4uju" "PF00366.15" "440" "2.40" "4rb5.Q_8-76.4rb5.pdb1.pdb"
"2zhg" "MerR" "dna" "MerR family regulatory protein" "2zhg" "PF00376.18" "1" "2.80" "2zhg.D_13-49.2zhg.pdb1.pdb"
"4rb5" "Ribosomal_S9" "rna" "Ribosomal protein S9/S16" "3i1z,2b9o,4dv4,1voz,2wdk,2y0w,2y18,2ykr,3o30,2wdm,3kiu,3i21,1s1h,3d5a,2y0y,4gd1,1pnx,1n36,3pyq,3kix,3ofx,2y0u,2wdh,3pys,4nvu,2vho,3j0u,3ofb,2z4k,2aw7,4dv7,2y10,3i9b,3oge,2xzm,4ukm,3oi4,2xzn,4dv3,2qbf,2qb9,1ibk,1hnw,3f1g,2i2u,2hgi,2qbh,3ofy,2wdg,2uua,2hgp,1hr0,1fjg,3o2z,2uuc,2gy9,2qbj,3fic,2qow,3v24,2f4v,2b64,4dr2,3or9,3zn7,2y12,2y16,2x9r,2qan,2qbb,3uoq,3knl,3pyn,2wrk,2wrn,3pyu,1j5e,2vqe,1vvl,4ji3,4kwz,4qcu,1vxp,4tp0,4ukf,4tp6,4d5l,4qjt,1vvp,1vvr,4aqy,4ujm,5aj3,4ujz,4ulg,5a2q,1vxw,4ukw,4uku,1vxk,4pe9,4rbb,4ukk,1vvv,4ulm,4tol,4qd0,3j7a,1vvx,4qs2,4uju,4rbh,1vvz,4ox9,4rbd,1vvt,4ujf,1vxm,4wt8,4ukr,4uq5,4ul4,4tpa,4tow,4ulj,4nvy,4d61,4rbj,1vwv,1vx8,4ujh,4tp8,4qcm,4qcs,4ukp,4ul1,4tp4,4ujp,4tpe,4w2a,4wus,4uk9,1vy0,4waq,4qcw,4uk1,4yhh,4ukb,4uk6,4uk4,4rbf,4ulb,4ul9,1vxi,4ujw,3j80,1vvn,4ulp,4ton,4wao,3i8g,2e5l,2qbd,3uz6,3mr8,1vs7,4g5t,3izv,2j02,1vox,3d5c,3ofa,2wwl,2wh1,3uxt,3ofo,1hnz,1xnr,2zm6,1i94,2wh3,3df3,3i8h,2qp0,2j00,2qoy,2gyb,3ofp,3oto,2qal,1voq,1vs5,2b9m,4lf4,2vqf,2i2p,2v46,3oi0,2v48,3ohc,2qou,2ow8,2wrq,1n33,3ora,3df1,1vov,4b3m,2x9t,3i9d,3oaq,3kiq,4g5m,3znd,2wri,2y14,3huw,1vos,3i1o,1ibm,1xmo,3oi2,3ms0,2hgr,3ogy,1xnq,3i1m,2uu9,2xg1,2xqd,4duy,2uxd,3jam,1ibl,2z4m,2uub,1n34,2vhp,2hhh,3ohd,3ohy,1pns,4kda,4nw0,4kbt,4kd0,3j81,3j00,4lfc,3j4w,4ukz,4qs0,4ul6,4nxm,1vxz,4uq4,4kx1,3j4v,4kj8,4tp2,4a2i,4ji2,3j5d,4cr1,4kdg,4nvw,4ukh,3j59,4jv5,4b3s,3j5n,3j57,4l6m,4ji5,1vw9,3v6v,4cxc,4b3r,4kj0,4kiy,4btc,3j5f,2xfz,4rb7,4b3t,4qcy,4nxn,4ulr,4qcq,4juw,4jya,3j55,3j5t,4lfb,4ji7,4ujk,4lf5,4ji1,4kj4,4l6k,2uxb,4lf8,3j5b,4w28,3j6v,3j5h,4kzy,4byd,1vx2,4lf7,1vx5,4gkj,4lf9,4byb,4ji6,4kvb,4kdj,1vxs,4ji8,3j43,4tpc,3j4z,4kbv,4adv,4kfh,4ujr,4tou,4khp,4kj2,4kcy,4lfa,4pea,4ji0,4ji4,4qco,4rb9,1hnx,4kzz,3v6u,4kjc,4rb5,1vy2,3j4y,3uzm,4bpn,4b8f,4gd2,4gaq,4dr4,4ule,4dr1,4kja,4dv0,4duz,2avy,4eja,3j20,3t1h,4abr,4w2c,4bpo,3v28,4gas,3i1s,4dr3,3huy,4dr7,2xuy,3i1q,4dv1,3uz4,4b8h,3j18,4k0k,4g5k,4g5v,4dv2,4dv5,3j10,3uyf,3j0x,3j5j,4kd8,3izw,4dr5,4k0l,3v2c,4ej9,4k0p,4dv6,3v26,3oar,4dr6,3v22,4gkk,4kfk,3t1y,4uer,3uzg,4kzx,3j36,3knj,4dh9,3tvf,4lf6,3uxs,2xsy,4w23,4bpp,1n32,3e1c,3sfs,1yl4,3uzi,3j13,3j53,4dhb,3uyd,3uzl,4bpe,3knh,4kj6,3bbn,3fih,3kc4,3zvo,3jyv,3knn,3j5x,3j0z,3e1a,3kis,2qnh,3uz3,3f1e,2uxc,3uz7,3tvg,3j0v,1xmq,3v2e" "PF00380.14" "441" "2.40" "4rb5.I_8-128.4rb5.pdb1.pdb"
"1ais" "TFIIB" "dna" "Transcription factor TFIIB repeat" "1c9b,1vol,1ais,1d3u,4v1o,4v1n" "PF00382.14" "6" "2.10" "1ais.B_1212-1282.1ais.pdb1.pdb"
"2b3j" "dCMP_cyt_deam_1" "rna" "Cytidine and deoxycytidylate deaminase zinc-binding region" "2b3j" "PF00383.17" "1" "2.00" "2b3j.D_3-102.2b3j.pdb2.pdb"
"4u0y" "GntR" "dna" "Bacterial regulatory proteins, gntR family" "1h9t,1hw2,4wwc,4u0y,4p9u,4egy,4h0e,4egz" "PF00392.16" "8" "1.91" "4u0y.D_11-74.4u0y.pdb1.pdb"
"3ftf" "RrnaAD" "rna" "Ribosomal RNA adenine dimethylase" "3fte,3ftf,4adv" "PF00398.15" "3" "2.80" "3ftf.A_1-245.3ftf.pdb1.pdb"
"4ujp" "WD40" "rna" "WD domain, G-beta repeat" "4w28,4kzy,4uq4,3j81,4cxc,4w23,4ujk,4ukz,1vx5,1vx2,4ule,1vw9,3jam,4kzz,4bpe,2xzm,3o30,2xzn,3o2z,4bpn,4bpo,4e5z,4e54,4kzx,4bpp,3jyv,4ujz,4ukp,4uju,4d61,3j80,4uk4,5a2q,4uq5,4d5l,4ulp,4ujf,4ulj,4ukk,4uku,4ujp,4uk9,4ukf,1vwv,4ul9,4ul4,4uer" "PF00400.27" "47" "2.80" "4ujp.h_138-182.4ujp.pdb1.pdb"
"4rb5" "Ribosomal_S8" "rna" "Ribosomal protein S8" "4uer,2x9r,2qbb,2ykr,1j5e,2y16,2qan,2wrk,3ofy,2wrn,3oaq,2qbh,1ibk,2wdg,1hnw,3or9,3huw,2qb9,2gy9,3d5a,2b9o,2z4k,4bpe,1n36,3ofb,4dv3,3i9b,4gd1,3kix,2wdh,2qbf,3pyq,2b64,3i21,3knl,3o30,2y18,1s1h,2y12,2y0y,3f1g,2y0w,3ofx,2vho,3o2z,2hgp,3j0u,3uoq,3kiu,3pyu,1fjg,4dv4,2vqe,2aw7,1hr0,2f4v,3pys,2i2u,2y0u,2hgi,3i1z,3oi4,2y10,2wdk,4dv7,2uuc,2wdm,2qbj,1voz,3pyn,3oge,4nvu,2uua,1pnx,4ji6,4byb,4ujk,3j5t,4nw0,3j55,4lfb,4lf5,4ji1,4ji8,2uxb,1vxs,4qcq,1vw9,4byd,4w28,4kvb,4kzy,1vx2,3j5b,4jya,4lfc,4lf7,1vx5,4lf9,4l6k,3j59,4b3t,2xfz,4b3r,4ji4,4w23,4ji5,4cxc,4nxm,3j5f,4rb7,4qcy,4cr1,4ulr,4ji2,3j5d,4kx1,4ukh,3j5n,3j4w,3j00,4qs0,4khp,4kbv,4ujr,1vy2,1vxz,3j4z,4rb9,4ukm,4tou,4pea,4lfa,4ukz,4ul6,4kbt,4rb5,4qco,4kda,4tpc,4ji0,4lf8,4l6m,3j4y,4kj4,4adv,4uq4,4kdg,4nxn,4juw,4gkj,3j43,3j57,4kcy,3j4v,4a2i,4kiy,3v6u,4btc,3j5h,3v6v,3j81,1hnx,4tp2,4kjc,4ji7,4kj8,4kdj,4b3s,4nvw,4kj0,4kj2,4kd0,4kfh,4jv5,2uu9,3i9d,2y14,4gkk,2wh3,3oto,2qou,1ibl,2b9m,1vs7,4g5t,3df3,1s03,3ohy,2qbd,4duy,2uub,3i8g,3ofo,2wri,3oi0,4g5m,2gyb,3znd,3j36,2i2p,3jam,2v48,3i1o,2ow8,1xnq,3ora,2z4m,3ohd,3ofp,4lf4,2j00,3ogy,2qal,3ms0,3uz6,1vox,1ibm,2uxd,1vos,2v46,1n34,2wwl,3df1,2qoy,3ohc,3i8h,1fka,2hhh,2vhp,1n33,2x9t,1xmo,1voq,1i94,2xqd,2j02,3mr8,2wrq,1hnz,1xnr,2wh1,2e5l,2zm6,3uxt,1pns,2vqf,3oi2,3i1m,3ofa,3kiq,2hgr,1vs5,3d5c,1vov,4ukf,4ukw,1vxw,1vvl,4ul1,4tp6,4wao,4ul4,4uku,4tpa,4ujw,3j7a,1vwv,4ujm,4ton,4kwz,4pe9,4uk4,4qd0,4rbh,1vy0,4uk1,4pdb,4rbj,1vvn,4tp4,1vvz,4rbb,4ukb,4waq,4ox9,1vvt,4w2a,4yhh,1vvv,4d61,4ulp,4tpe,4ujp,4ulb,4rbd,4ujf,4ukr,4ujz,4qs2,4tow,4ukk,4tp8,1vx8,4rbf,4qcw,1vxm,4ul9,4uk9,4tp0,1vxk,4wus,4qcu,4aqy,4tol,4qcs,4uju,4ulj,4ujh,1vvx,5a2q,4nvy,4ulm,4wt8,4ji3,4ukp,4uk6,1vxp,1vxi,1vvp,1vvr,3j80,4uq5,4qcm,4ulg,4qjt,4d5l,4dr7,4k0k,4gaq,3uzm,4dv5,4duz,3uyf,4abr,3j5j,4gd2,4dr5,4dr1,3i1q,4b8f,4gas,4dv0,3i1s,4dr4,3j20,4dv1,4kzz,4k0p,4dr6,4b8h,4dr3,4w2c,4ule,4dv2,4g5k,3huy,3j10,4dv6,3v26,2avy,3zn7,3v22,4eja,3v24,3uz4,4ej9,2xuy,4bpn,4g5v,3j0x,3j18,3v28,3t1y,4kja,4kfk,4bpo,4kzx,3oar,3v2c,4k0l,3zvo,3t1h,4kd8,3izw,3j53,3knn,3uz7,1i6u,2uxc,3v2e,2xzn,2xzm,2qnh,3uzi,3f1e,4dr2,1yl4,3kc4,1n32,3j5x,3j13,3e1a,3bbn,4dh9,3uz3,4bpp,4kj6,3tvf,3e1c,3uxs,4lf6,3tvg,4b3m,3uyd,2xsy,3knj,2qow,3uzg,2qp0,3kis,3j0z,3fic,2xg1,3knh,3uzl,3sfs,3izv,3fih,1xmq,4dhb,3j0v,3jyv" "PF00410.14" "443" "2.40" "4rb5.H_4-138.4rb5.pdb1.pdb"
"4rb5" "Ribosomal_S11" "rna" "Ribosomal protein S11" "4kzx,3e1c,1n32,3v2e,3j5h,4dh9,1yl4,3e1a,3tvg,3fic,3sfs,3j0o,3uz7,4kj6,3kis,3tvf,4bpe,4nxn,3uzi,3uxs,2uxc,1xmq,3j0z,4k0k,4w23,4dhb,3uyd,3zvo,2qnh,4gkk,3uz3,2qow,3jyv,3j53,3knh,3j5x,3bbn,3j0l,2xsy,3kc4,4bpp,4dv2,3knj,3uzg,3fih,3j0v,3j13,3uzl,3f1e,4rb9,1hnx,4qs0,4tp2,4pea,4l6m,4qcy,1vy2,4kj0,4rb7,4kcy,4b3s,4kj4,1vx2,4ji4,3j5n,4kj8,4b3r,4lfa,3j5d,4tpc,3j5t,4lfc,4rb5,3j4v,3j00,4gkj,3j4w,4kvb,4kj2,4ul6,4nvw,3j5f,4nw0,3j5b,4ukz,4kdj,3j6v,4ji8,4a2i,4lfb,3j4y,4byd,4b3t,4kiy,4lf7,4kbt,4ulr,4ji6,3j55,4byb,4qco,4cxc,4btc,4kjc,1vw9,4lf5,4tou,3j57,4lf9,3j4z,3j81,4kx1,4khp,4w28,2xfz,4kbv,4adv,4kdg,4lf8,3v6u,4kfh,3j43,4kzz,4ukh,3v6v,4jya,2uxb,4ji5,1vxs,4l6k,4ujr,4nxm,4juw,4kd0,4b3m,1vxz,4jv5,4ujk,4ji0,4ji7,4kda,4ji1,4ji2,4qcq,1vx5,4kzy,4cr1,4uq4,4uer,2qbh,2gy9,1ibk,2uuc,1hnw,2y0u,2vho,2qbj,2b64,2y0w,3pys,2qbf,1fjg,2wdh,3pyu,2xzn,2z4k,3ofy,4nvu,2xzm,3oge,2qan,3oi4,3pyn,3i21,2y16,1s1h,4ukm,3knl,2wdm,3i9b,2x9r,2aw7,2f4v,1hr0,3j59,3or9,3kix,3pyq,2y12,3j0u,2y0y,3o2z,4dv3,2wdk,3i1z,3f1g,4dv4,2qbb,3o30,3kiu,2wrn,3d5a,2uua,3uoq,4dr2,1j5e,2wrk,2vqe,3ofx,2hgi,1n36,3v24,2i2u,4dv7,3oar,1voz,3ofb,2b9o,2y10,4gd1,1pnx,2y18,3zn7,2hgp,2qb9,3j20,2xg1,3i1s,3t1y,4g5v,4k0l,4dv5,4kd8,4dv1,3j18,4b8h,3v2c,4dr4,3v26,4kja,3v28,3j10,3huy,4w2c,4abr,3t1h,4k0p,4dr5,4ej9,4dv6,4bpo,3j0x,4bpn,4eja,3v22,4dr7,4gaq,4g5k,4gd2,4dr1,2avy,4gas,3uz4,4b8f,3izw,3j36,4kfk,4dv0,3uyf,4dr3,3i1q,2xuy,3uzm,4dr6,4ule,4duz,3ohy,2uxd,2vhp,3i8g,3ohc,2hhh,2wri,2wwl,2z4m,1n34,3i9d,4duy,3znd,1vov,1xnq,3uxt,2y14,1xmo,3i1m,2uu9,1pns,2xqd,3ogy,2hgr,3ohd,3huw,3oi2,1vos,4g5m,3i1o,3jam,1ibm,3ms0,1ibl,3oaq,2uub,2qp0,3df1,3uz6,2wrq,1n33,2ow8,3ora,3oi0,3ofp,2b9m,2wh1,2ykr,2i2p,2j00,2x9t,2v46,1voq,2wh3,2v48,2vqf,2qal,3df3,1vs5,2qoy,3izv,1vox,3knn,1xnr,2qou,3mr8,2zm6,1hnz,4lf6,1i94,3ofo,2e5l,3kiq,4lf4,2j02,2qbd,2gyb,4g5t,2wdg,3oto,3i8h,1vs7,3d5c,3ofa,3j5j,4tp8,4waq,4yhh,1vvr,4tpe,3j7a,4qcw,4wao,4ukb,4uq5,4ji3,4kwz,1vvt,4qcs,4ulg,4d61,1vxw,4qs2,4wus,4tpa,1vvx,4ton,4uju,1vvz,1vwv,4ujf,4ujz,4qd0,4ox9,4ul4,4d5l,4rbf,1vxm,1vxp,4ujh,1vxi,4ulb,4ulm,4ul9,3j80,4tol,1vy0,4rbd,4uk4,1vvp,4ujw,4tp6,4tp4,5a2q,4uk6,4rbb,4ulp,4wt8,4ukp,4ukk,4qcm,4tp0,4aqy,4qjt,4uku,4rbj,4pe9,1vvl,1vxk,4ukf,4ukw,4ujm,4ul1,4qcu,4ukr,4w2a,4tow,1vvn,4rbh,4nvy,4ulj,1vx8,4uk1,4uk9,1vvv,5aj3,4ujp" "PF00411.14" "443" "2.40" "4rb5.K_17-126.4rb5.pdb1.pdb"
"4rb5" "Ribosomal_S13" "rna" "Ribosomal protein S13/S18" "4gas,4bpo,4k0p,4dr4,2xuy,3v2c,4dr3,3i1q,2avy,4kd8,3v22,4dv6,4bpn,3j5h,4gd2,3j36,4w2c,3uyf,4duz,3j0x,4eja,4dr7,4gaq,3huy,4g5k,4dr1,4dr6,4dv0,4kzx,3j18,4nvw,4b8f,3izw,4kfk,3uzm,4g5v,4dr5,3t1h,3v26,3v28,3j20,4kja,3t1y,3j10,4k0k,4dv1,4dv5,3uz4,4b8h,3i1s,4ej9,4rb7,4ule,4abr,1vwv,5a2q,4ukf,4ukw,4ji3,1vvt,4tpe,1vvr,4wus,4ujh,1vvv,4uku,4ujz,4ulg,1vvp,4d61,4kwz,4ukb,1vvn,4qjt,4d5l,4qcw,4tol,1vx8,4qcu,4ul4,4ukk,4qcm,4tp8,4waq,1vvx,4uk1,4ujp,4aqy,4rbh,1vxw,4tp4,1vxp,1vvz,4rbb,1vy0,4yhh,4uk9,4wao,4wt8,3j80,4rbd,4ul9,4qs2,4rbf,4uju,4ulb,4nvy,4ukr,4pe9,4w2a,1vxm,4rbj,1vvl,1vxi,4ulj,4qcs,4ulm,4tow,3j7a,4ujm,4ukp,1vxk,4qd0,4tp0,4uk4,4uq5,4tp6,4tpa,4ul1,4ulp,4ujw,4ujf,4ton,4ox9,4uk6,3kis,3j0v,3uz3,2xg1,3uzi,3j5x,3knh,4dv2,3v2e,3uzl,3uzg,3sfs,3uyd,4kj6,3tvg,3e1c,1n32,4nxn,3j53,2uxc,4dhb,3knj,4bpe,3j0z,3zvo,3tvf,4bpp,2xsy,4dh9,3uxs,3uz7,3fih,3kc4,3bbn,4k0l,3e1a,3f1e,3j13,3jyv,2qnh,1xmq,4gkk,4uer,1vxs,4nxm,4byb,1vw9,4ujr,4b3m,4kx1,3v6v,3j4z,4a2i,2uxb,3j55,4jya,4lf9,3j4w,4khp,4ji6,4ji8,4ji2,4cxc,4kzy,4kjc,4lf5,4lf8,4qcq,4jv5,4lfb,4kj2,4kdj,3j5f,4ul6,1vxz,4ujk,4btc,4gkj,4kvb,4nw0,4ukz,4kdg,4w28,3j5b,4b3r,4byd,4kd0,4ji7,3j00,4kbv,4kzz,4tou,1vx2,4rb5,3j5n,4juw,3j81,4uq4,1vx5,4qs0,3j4y,4tp2,3j5d,4kj4,1hnx,3j57,4adv,3j43,4tpc,2xfz,4kfh,4ulr,4cr1,4kj8,4ukh,4ji4,4rb9,4qcy,4b3s,4qco,4l6k,3j4v,4kda,4ji5,4ji0,4l6m,3j5t,4kiy,4kcy,4kj0,4lf7,4lf4,4lfc,1vy2,4b3t,4lfa,4kbt,4ji1,4pea,4nvu,3v6u,3oge,4dv3,2x9r,3o2z,3j0u,2qbb,4gd1,3oi4,2wrk,3i9b,3v24,3uoq,2y0y,1s1h,2wdm,2uua,3zn7,3pyn,1voz,3i21,2b9o,3knl,3ofx,4ukm,1hr0,2xzm,2qan,1j5e,4dv7,2y16,3f1g,2wdk,2uuc,2xzn,3kiu,2qbh,2qow,2wdh,2y0u,4dv4,2vqe,2qbf,3o30,1pnx,3pys,2gy9,2qbj,2b64,2hgp,2y0w,2y18,2i2u,1fjg,3oar,3pyu,1ibk,2qb9,2aw7,3ofy,3ofb,3fic,4dr2,3or9,3j59,2y10,3i1z,2f4v,2hgi,3pyq,1hnw,3kix,2wrn,1n36,2vho,3d5a,2z4k,2y12,1i94,3knn,2v46,3jam,3huw,2v48,3j5j,3i9d,3ofp,3oto,1ibl,2ykr,2wwl,1ibm,2uu9,3uz6,1vs5,2hhh,3oaq,3uxt,1yl4,3i1m,1hnz,2j02,2wdg,3ofa,1vox,3ohc,2vqf,1xmo,1n33,2j00,2qal,3df1,2wh3,2x9t,1vov,4g5m,3mr8,1pns,3ogy,2hgr,3ms0,2xqd,3oi2,3ohd,1vos,3kiq,3znd,2vhp,1n34,2uxd,3i8h,1voq,1xnr,1xnq,2ow8,3izv,2qbd,4g5t,1vs7,3d5c,3ofo,2e5l,3i8g,2b9m,4duy,2z4m,3ohy,3i1o,2y14,3oi0,3ora,3df3,2qp0,2zm6,2gyb,2wrq,2wh1,2wri,4w23,4lf6,2qou,2i2p,2uub,2qoy" "PF00416.17" "439" "2.40" "4rb5.M_3-109.4rb5.pdb1.pdb"
"4pmi" "REV" "rna" "REV protein (anti-repression trans-activator protein)" "4pmi" "PF00424.13" "1" "3.20" "4pmi.B_11-63.4pmi.pdb2.pdb"
"3ulp" "SSB" "dna" "Single-strand binding protein family" "2vw9,1eyg,3vdy,3ulp,3udg,2ccz" "PF00436.20" "6" "2.10" "3ulp.A_82-193.3ulp.pdb1.pdb"
"3vok" "TetR_N" "dna" "Bacterial regulatory proteins, tetR family" "2yvh,1jt0,3lsr,3vok,3lsp,1qpi,3zql,4gck,4gcl,4l62,4gct,4jl3" "PF00440.18" "12" "2.00" "3vok.B_17-59.3vok.pdb1.pdb"
"4rb8" "Ribosomal_L36" "rna" "Ribosomal protein L36" "2xg2,4qcx,2xg0,3v6w,1vy1,3j5e,3j50,4kdh,4qcn,3j56,4kiz,4kjb,4too,3j5i,1vvs,4kj9,1vy3,3j5w,4kdk,3j58,3j5a,4k0q,4qjs,4tox,3j5g,4rba,4rbc,2zjq,4kj5,4kdb,4nvv,4csu,4kix,3j5k,4byc,3j5u,4nw1,4jux,3j52,4kj1,3j54,3j51,4kbu,4kj7,4btd,3j5o,1vxl,4nvz,4kcz,4k0m,3j4x,3v2d,3kiy,3kiw,3j12,3knk,3j5c,4ejc,3kni,3j0w,2awb,3kno,4b8g,2i2v,3hux,3v2f,3knm,3izu,3j0t,3ofr,4ioc,3zn9,3kcr,3bbx,3v29,2b66,2b9n,2b9p,3kit,3kir,3j19,1yl3,3v23,3zne,4kj3,3v25,3j0y,3j11,1vt2,3j14,4gau,3v27,2zjr,4ioa,3pip,3oas,1vsp,1voy,3i20,1vsa,3i1p,3og0,4gar,3i1r,3j7y,3i1t,4dhc,3bbo,3orb,3ofc,4io9,1vvm,2i2t,1vp0,3izt,3ofq,4dha,3ofd,2hgq,3ofz,3huz,3i1n,3i22,2hgj,2hgu,4qct,1vvy,4tom,4qs1,4rb6,1vxq,4tp9,4tp5,1vvw,4peb,5aka,4tpf,4tp7,4tov,3j01,4v19,1vvo,3j8g,4rbk,4w2d,4tpb,1vvq,3pio,1vvu,1vx9,4rbi,4tp1,1vxj,4war,1vxn,4rbe,4wwe,4qcz,4qcp,4wwt,1vxt,4rbg,4rb8,1vw0,3dll,4wap,4tp3,4pec,4qs3,4tpd,4w2b,4qcr,4qcv,2qam,2qba,2qbe,2y17,2qao,2qbg,2qbk,2qbi,2y15,3r8t,4abs,2y11,2y19,2qox,2y0x,2y13,2y0z,2wdi,4qd1,2wdj,2y0v,3r8s,2xtg,2xqe,2wrj,3uos,3e1b,2wrr,2wwq,4bye,2wro,2wrl,4nvx,3v6x,2j28,4kd9,4ejb,3j37,2zjp,2x9s,2x9u,2vhn,3cf5,3e1d,2wdl,4kbw,3zvp,2vhm,3sgf,4b8i,4kd2,2wh2,2wdn,2xux,2wh4,2aw4,3oat,2qoz,3j5l,3fin,2qp1,2qov,2z4n,1vs8,3df2,2qbc,3df4,1vou,1vor,1vs6,1vow,2z4l" "PF00444.13" "245" "2.40" "4rb8.9_1-37.4rb8.pdb1.pdb"
"2z70" "Ribonuclease_T2" "dna" "Ribonuclease T2 family" "2z70" "PF00445.13" "1" "1.70" "2z70.A_11-224.2z70.pdb1.pdb"
"3hts" "HSF_DNA-bind" "dna" "HSF-type DNA-binding" "3hts,1fym,1fyl" "PF00447.12" "3" "1.75" "3hts.D_196-282.3hts.pdb1.pdb"
"4c7o" "SRP54" "rna" "SRP54-type protein, GTPase domain" "2xxa,4c7o,3zn8,2xkv" "PF00448.17" "4" "2.60" "4c7o.A_100-296.4c7o.pdb1.pdb"
"4rb8" "Ribosomal_L20" "rna" "Ribosomal protein L20" "3j0y,3cf5,3kni,3j11,3tve,3uzf,4bye,3e1d,3tvh,2xtg,4kd9,3uz8,3fik,2xux,4nvx,3j14,3j0t,3sgf,4ejc,4kcz,1vsp,4dhc,3bbo,2b9p,3f1h,4b8i,3e1b,3j19,3uos,3f1f,2x9u,3v29,3mrz,2y0z,3kit,2gyc,2i2v,1vow,3uz1,2qbk,3izu,2wrl,2qba,3oi3,3oh7,2qao,1vxl,2qbi,1vou,2j28,2y17,3ofd,2y15,4abs,1vp0,1yl3,3pyt,3i22,3ohz,3ofz,3zvp,3d5d,3pyo,2qox,3og0,2y11,2qam,4qd1,2x9s,3ms1,3pyv,3ohk,3uz2,3knk,2qbg,3uzh,2y19,3j54,3pyr,2y13,2y0v,2vhn,2wrj,3j0w,3uxr,3uye,2y0x,2v49,3pip,3i1r,3oi1,3i9c,2zjr,3ofc,3hux,3i20,2qbe,1vt2,2j03,3ohj,3oh5,2wh4,2wdn,1voy,3kir,3oi5,3fin,1vs8,3ofq,2wrr,2zjp,3ofr,2j01,1vsa,2qp1,2wdl,3bbx,2aw4,2vhm,2z4n,3i1p,3kcr,3df2,3j5l,2wro,3orb,1vor,2xqe,3d5b,3j12,3i8i,2hgj,3kiy,2qov,2wwq,2z4l,3knm,2wh2,2b66,3kiw,2v47,3i9e,3oat,3i1n,1vs6,2qbc,2b9n,3uxq,3i8f,2wdi,3uz9,2gya,2qoz,2wdj,4kbw,2i2t,4dha,3df4,2hgu,2hgq,1vw0,4uy8,1vxq,5aka,1vxj,4l6j,4tov,3pio,3j8g,4pec,4peb,1vvw,4rbi,4v19,4qct,4wap,4rbg,4tp1,4rbe,4kx0,1vvo,1vvy,1vxt,4tp3,1vxn,4qs3,4rb6,1vvq,4tpb,4rbk,4kx2,1vvu,4rb8,3dll,4tp9,4wwt,4qcr,1vx9,4u67,4wwe,4tp7,4war,4qcv,4tpf,4w2b,4tom,3j01,4tp5,4tpd,4w2d,4qcz,4qs1,3uyg,4gar,2awb,3j5c,3i1t,4kj3,4gau,3v25,4io9,3izt,3r8s,4csu,3v27,3v2d,3zne,4g5u,4g5w,4ioa,3uzn,4ioc,3uzk,3v2f,3j37,4b8g,3huz,3v23,3j7z,4g5n,3v6x,3r8t,3zn9,3kno,4ejb,4g5l,4qcn,3oas,4kdb,4nvz,1vvs,3j51,4byc,4qcp,4kd2,4tox,3j5k,4qcx,4nw1,4kfi,3j56,4rbc,3j4x,4kbu,3j50,4k0q,4qjs,4nvv,2xg2,2xg0,3j5g,4k0m,1vy3,3j58,3j5a,4kj1,4kdh,3j5w,4ce4,3j52,3j5e,1vy1,4kjb,4kj7,4too,4kfl,3j5i,4kj5,3v6w,1vvm,3j7y,4kj9,3j5o,4kix,4l6l,4kdk,3j3w,2zjq,4rba,3j3v,4jux,4btd,3j5u,4kiz" "PF00453.13" "304" "2.40" "4rb8.U_2-109.4rb8.pdb1.pdb"
"4hub" "Ribosomal_L10" "rna" "Ribosomal protein L10" "4kix,4kj9,3j5o,4kiz,3j44,4qjs,3j5u,4kj5,3j7y,4kj1,4hub,3kiy,3o5h,2qa4,3kiw,3i8i,3j0y,3j14,3uos,3sgf,3j11,3j0t,3j0w,3j12,3kit,3kir,3j7z,3j37,3j5w,4v19,4uy8" "PF00466.15" "31" "2.40" "4hub.G_11-109.4hub.pdb1.pdb"
"1vqo" "KOW" "rna" "KOW motif" "3g4s,4kx0,4ulp,4tpb,4qcr,1vvw,4peb,4uk6,4qs1,4ukb,3j80,3cce,1vxj,4qcz,4ul9,3cpw,4uk1,3g71,4rbe,4wwt,4uk4,3ccu,4v19,4ujp,4tp7,4d61,1vvy,4ukf,4ujw,4tp3,4qcv,1vw0,4ulb,4rb8,1vvu,1vxn,3j8g,4ul1,4uk9,4ukp,4tov,4kx2,3pio,1vvq,4tp9,4tpd,3dll,4rbk,4d5l,4ujf,1vxt,4qct,3ccl,4ukr,3j01,4tom,4l6j,1vx9,4tpf,4ulj,3ccs,4ul0,4uju,4tp1,4ulm,1vxw,4uq5,4w2b,3g6e,4qs3,4ujh,4w2d,4ujz,4pec,1vwv,4ul4,4wap,5a2q,4ukk,1vvo,3j7a,4uku,4tp5,4ulg,4war,4rb6,4rbi,4wwe,3ccr,4ukw,4u67,4rbg,3ccj,3ccv,1vxq,4ujm,4a18,2qex,3f1f,3kni,2otj,1vsp,3e1b,2b9p,3fik,4a1d,3tvh,3v2f,2xtg,2d3o,3uzf,3bbo,4a1b,1vq4,3j14,4ejc,3j0t,4csu,3f1h,3uz8,3e1d,3j0y,3v2d,3sgf,2ww9,4a17,3v27,1yit,3cf5,4a1e,3j11,4bye,3ccm,4dhc,2wwa,2xux,3tve,1yi2,3j19,4a1a,4nvx,1yjw,4kd9,3cma,1vqn,3cc2,2zjq,3j5o,4kdb,4kjb,3j3w,4rba,4ujr,4kj5,3j5e,4too,4k0q,4kdh,2xg0,4qjs,1vxz,3j5k,4nvv,4k0m,4l6l,4kd2,1vx5,3j5i,1vw9,1vvs,4w23,1vx2,3j46,4jux,4cxc,3j52,3j3v,3j5g,1vxl,1vy3,3j58,3ccq,3j5w,4qcp,4kzx,4kj1,3j45,4kj7,4kdk,3j4x,4hub,1vvm,3j54,4kfl,4kj9,4kix,1vy1,3cc7,3j5u,2xg2,3j5a,4nw1,4tox,3j51,4ulr,4kcz,3j56,4uq4,4qcx,4byc,3j50,4ul6,4ukh,4ujk,4kfi,4nvz,4w28,4kzz,4kbu,3j81,4kzy,4ukz,4kiz,3v6w,4rbc,4btd,1yhq,2v49,3bbx,3i9e,3df4,3kiy,2vhm,1vs6,3o58,3i8f,1q82,3ofq,1kqs,1yij,3uxr,3d5b,4b8i,1qvg,2qoz,2qa4,2v47,1jj2,3df2,3knm,2xqe,2otl,1vqm,3i1p,3i1n,1yjn,3orb,2zjp,2wwq,3oat,1kd1,2z4n,1w2b,2z4l,2wdn,3kir,3fin,2b9n,2hgq,1vq6,1vt2,3j12,2hgu,3jam,2wrr,4g5w,2i2t,1vqk,3uz9,3j7y,2b66,2qbc,2wh2,1yj9,1nji,3uxq,2wdj,2wdi,1vql,3j44,2wh4,1vq9,1m1k,2wro,2aw4,3j5l,2gya,2wdl,4kbw,3zvp,2qp1,2j01,1vs8,1vq5,3ofr,3oh5,3o5h,1q81,1vsa,3cc4,3kcr,2j03,4a19,2hgj,1m90,4dha,3kiw,3i8i,3cd6,3izt,4ejb,3j43,3oas,4b8g,3uzn,4g5l,4ioa,3uzk,4g5n,3v23,3kno,3i1r,3i1t,4ioc,3j5c,3r8s,3j20,1n8r,3v25,4ule,4io9,4gar,3j37,3v6x,3zn9,4g5u,3huz,3uyg,4gau,2awb,3zne,4kj3,3ow2,4uer,4a1c,2qao,3pyo,2qbg,3j0w,3ohz,1yl3,2y13,3i56,3cme,3oi1,3r8t,3cxc,2y0x,1k8a,1s1i,3kit,3ofc,3hux,1vp0,2x9s,3d5d,3pyr,3v29,3ofz,3knk,3uzh,3ofd,1vow,2y17,2y11,2qox,1vq7,2zjr,3uos,1qvf,3uz1,3mrz,1s72,3pip,3uz2,2i2v,1vq8,3i9c,3pyv,4qd1,2qam,4ukm,2qbe,2y19,3uye,3og0,2vhn,1kc8,1k73,2wrj,3i20,2wwb,3ms1,3i55,1vqp,3pyt,3izu,1k9m,2y0v,4abs,1vou,2qba,1vqo,2qbi,1q7y,2j28,3oh7,2wrl,4qcn,2gyc,2y15,2qbk,2y0z,2x9u,1q86,3i22" "PF00467.24" "436" "2.20" "1vqo.T_44-75.1vqo.pdb1.pdb"
"4rb6" "Ribosomal_L34" "rna" "Ribosomal protein L34" "2wdi,2y17,2i2v,3j0w,2qox,2y15,3uye,3i22,2qbe,1vou,3ofz,2qbi,2qba,2y0z,4kd2,3ofc,3uz2,3v27,3v29,3i20,3v23,3pip,1vp0,3hux,2qam,3uz1,4abs,2y13,3v2f,3izu,3v25,3tve,2y0x,3tvh,3uzf,2y11,2qbg,3r8t,4qd1,3uz8,3og0,3knk,2y19,1vow,2qao,2qbk,3ofd,2y0v,3j3v,3j51,1vvm,4kfi,2xg0,4btd,4nvz,1vy1,4kfl,1vxl,4kbu,3j5u,4l6l,4jux,3j5a,3j50,3j58,4kj1,4kj7,4k0m,1vy3,3j52,4kdk,4kcz,3j5g,4kj9,3j7y,3j54,3j56,4qcn,4kix,3j4x,4ce4,4nw1,2xg2,4kj5,3j5e,4kjb,3j3w,4k0q,4too,4rbc,1vvs,4rba,4byc,3j5w,4qcx,4kdh,3j5o,4kdb,3j5k,4nvv,3v6w,4tox,3j5i,4kiz,4qjs,4war,5aka,3pio,4rbe,4w2d,4rb8,1vxj,4rbg,4tpd,4qcr,4w2b,4tp7,4peb,4wap,4qct,1vxt,4pec,4qs1,1vxq,4qs3,4tp5,4tpb,4qcz,4u67,1vvq,4rbk,4v19,1vvo,4tpf,4tom,4tov,3j8g,4qcv,4rb6,1vvy,4wwt,4kx0,4rbi,1vx9,4uy8,4tp9,4wwe,4tp1,4tp3,1vxn,4kx2,4l6j,1vvw,4qcp,3j01,1vw0,1vvu,2wdj,2v49,2wh2,2wrl,2wdn,3v6x,2wro,3j0y,2wdl,2wh4,3j14,2wrj,4ejc,2v47,3mrz,2xux,3j0t,2b9p,3j19,3kni,2j01,3zvp,2x9s,4csu,1vsp,4nvx,3uos,4kd9,2x9u,2xtg,3e1b,2xqe,4bye,3j11,2wrr,3sgf,2wwq,3e1d,3fik,3bbo,2j03,4dhc,3j12,1vor,1voy,3i1p,3df4,2qbc,4g5w,3j5l,4dha,3i1n,1vs6,2b9n,3fin,2qoz,3kiy,2i2t,3oat,3v2d,1vs8,3df2,3ofr,2qp1,3ofq,3uxr,3bbx,2b66,3uxq,3kir,2aw4,1vt2,3orb,3uz9,2z4n,3knm,3kit,3kiw,3kcr,2qov,4kbw,2z4l,4g5l,3pyt,3uzh,3pyv,3zne,3oi3,4b8g,3d5b,2vhn,3oas,2vhm,3oi1,3pyr,3pyo,3d5d,3i9c,2hgq,3huz,3i8i,3i8f,2j28,3uyg,4g5u,3uzk,3i9e,2awb,3j37,3ms1,2hgu,4g5n,3oi5,4gar,1vsa,4kj3,3r8s,4b8i,3oh7,3i1t,2hgj,3f1h,3f1f,1yl3,3zn9,3j7z,3ohk,3ohz,3oh5,3j5c,4ejb,3uzn,4gau,3izt,3ohj,3kno,3i1r" "PF00468.12" "294" "2.40" "4rb6.7_1-44.4rb6.pdb1.pdb"
"4rb6" "Ribosomal_L33" "rna" "Ribosomal protein L33" "3v25,3pyv,3uye,4g5l,3oi5,4gau,3uyg,3j7z,2hgq,3oh7,3ohj,3oi3,2hgu,3j5l,4b8g,3oas,4kj3,4gar,3oh5,3pyt,3oi1,4g5u,3zne,3ms1,3ohk,3i1t,3pyr,3zn9,3i1r,3uzk,3mrz,4ejb,2hgj,1yl3,3uzn,3ohz,3huz,3f1f,4ejc,2j28,3j37,3kno,2vhm,3d5d,3r8s,3d5b,3izt,2vhn,4g5n,2awb,4rbe,1vvw,4kx0,4rbg,4tp1,5aka,4rb8,1vvq,1vxq,4tp5,4rbk,4wwt,4qs3,4kx2,4w2d,4uy8,4wwe,1vxj,3j01,1vvo,1vvy,4qcp,4tp3,4rbi,4qct,4l6j,1vxn,4u67,1vx9,4rb6,4v19,4tom,4tpf,4tp9,4tp7,4tpd,4wap,4qs1,4peb,4tpb,1vxt,4qcr,4war,1vw0,4w2b,4pec,4tov,4qcz,1vvu,4qcv,3pio,3uzf,3v2f,1vou,4qd1,3pyo,2gyc,3izu,2qba,3og0,3tve,3i20,3v27,4abs,3v29,3hux,2y0z,2y17,3tvh,3i9c,3pip,2qbk,3i22,2i2v,3uz1,2qox,2qam,2y11,3uzh,2qbe,2y0x,2y15,3uz2,2wdi,3knk,1vp0,2y13,3j0w,3ofd,2qbg,3ofz,3ofc,3v23,2qbi,2y19,3uz8,2y0v,1vow,3r8t,2qao,3j51,1vy3,4rba,3j58,3j5k,4k0m,4kj9,4rbc,4jux,4nvv,4kd2,4k0q,4byc,4qjs,4nvz,4kdb,4tox,3j5o,4kbu,4kj5,3j5u,4kcz,1vvs,3j5g,4kdk,4nw1,4l6l,3j54,4kix,3j5w,3j50,3j7y,3j56,4kfi,1vy1,4kj1,4kj7,2xg2,3j52,3j4x,1vvm,4kfl,1vxl,4qcx,4kiz,3v6w,4btd,2xg0,3j5i,4qcn,3j5a,4kjb,3j5e,4csu,4kdh,4too,4ce4,1voy,3i8i,3j12,2aw4,2qov,3uxr,2gya,3i9e,2b66,3j44,1vs6,3i8f,2qbc,3knm,2z4l,3kit,3v2d,3df2,1vs8,3ofq,2z4n,2qp1,3bbx,3uxq,3kiy,3kir,3kcr,3orb,2i2t,3df4,3j5c,1vt2,3kiw,3uz9,3ofr,1vor,2b9n,3i1p,3oat,4g5w,4kbw,3fin,3i1n,2qoz,4dha,3f1h,2xtg,4b8i,2v47,2xqe,2wh2,4bye,3fik,3uos,3j0t,2wh4,3e1d,2wdj,3sgf,2b9p,3zvp,2wdn,3j11,2wdl,2v49,4dhc,4kd9,2x9s,2wrl,2j01,3kni,3j14,2j03,3j0y,2x9u,4nvx,2wwq,3e1b,2wrj,2xux,3v6x,3j19,2wrr,3bbo,2wro" "PF00471.15" "292" "2.40" "4rb6.6_6-53.4rb6.pdb1.pdb"
"3f1g" "RF-1" "rna" "RF-1 domain" "3f1e,4dh9,3d5a,2x9r,3f1g,4kfk,3mr8,3d5c,2wh3,2wh1,3ms0,2x9t,4kfh,4ce4" "PF00472.15" "14" "3.00" "3f1g.X_226-338.3f1g.pdb1.pdb"
"4yfu" "DNA_pol_A" "dna" "DNA polymerase family A" "4c8m,3tar,3tap,4f2s,4ez6,4cch,4dle,4f2r,4c8n,4b9n,3tan,4b9l,3thv,4b9u,4c8l,3lwl,4b9s,4f4k,4b9v,3taq,3rr7,2ajq,1tk5,3ktq,1d9f,3hp6,1sks,1x9m,2hht,1nk0,1qsl,3eyz,1d8y,1njz,1tau,1tk0,2xy7,3ez5,1u4b,1kln,2kfn,2hhu,3m8s,1u48,3lwm,2hvh,3bdp,2hhx,4dqi,2hhs,3syz,4e0d,1x9w,2kfz,3m8r,1t7p,3sv4,1u47,1sl1,1sl2,1x9s,1l5u,4dwi,3px4,1l3u,3ht3,1l3v,4c8o,3pv8,4elt,4b9m,3px0,3po4,1l3s,1l3t,3px6,2y1j,2bdp,1nk5,3t3f,4bwm,1nk4,1njy,2xo7,3rtv,3rrh,1njx,3ti0,1nkb,3rrg,1nke,1njw,2xy6,1nkc,4xvm,4uqg,4ztu,4xiu,4o0i,4x0q,4ez9,4n56,4x0p,4n5s,4xvi,1skr,2hhw,1qss,3po5,1ua1,1qsy,1lv5,3hpo,4f8r,3py8,4xvk,4xvl,1d9d,1u49,1tk8,1nk9,4bdp,2xy5,3rr8,1qtm,1t8e,2hhq,1krp,1ksp,1u45,1xc9,1zyq,2hw3,1nk6,1nk7,1sl0,1ua0,2hhv,4ktq,1kfs,2hvi,1skw,2ktq,1nk8,2y1i,1tkd,4yfu,4ztz,4bwj,4ds5,4dse,3sv3,4b9t,4dsk,4dlg,4dqs,4dsf,4dqq,4dsj,4df4,4dsi,4dfk,4elu,4dqp,4dfm,4dfp,4dfj,4elv,4f3o,4ds4,3sz2,3oju,4dqr,3ojs,4c8k,4df8,4dsl" "PF00476.15" "177" "1.50" "4yfu.A_495-875.4yfu.pdb1.pdb"
"1gxp" "Trans_reg_C" "dna" "Transcriptional regulatory protein, C terminal" "4kny,4kfc,4nhj,1gxp" "PF00486.23" "4" "2.50" "1gxp.B_149-225.1gxp.pdb1.pdb"
"4ni7" "IL6" "dna" "Interleukin-6/G-CSF/MGF family" "4ni9,4ni7" "PF00489.12" "2" "2.40" "4ni7.A_29-182.4ni7.pdb1.pdb"
"1qrv" "HMG_box" "dna" "HMG (high mobility group) box" "3u2b,4nnu,1qrv,4euw,3f27,3nm9,3tq6,3tmm,1gt0,4nod" "PF00505.14" "10" "2.20" "1qrv.B_5-71.1qrv.pdb1.pdb"
"2bop" "PPV_E2_C" "dna" "E2 (early) protein, C terminal" "2ayb,1jj4,2ayg,2bop" "PF00511.12" "4" "1.70" "2bop.D_328-407.2bop.pdb1.pdb"
"1ksy" "PPV_E1_C" "dna" "Papillomavirus helicase" "1ksy,1ksx,2gxa" "PF00519.12" "3" "3.05" "1ksy.C_166-303.1ksy.pdb1.pdb"
"2xcs" "DNA_topoisoIV" "dna" "DNA gyrase/topoisomerase IV, subunit A" "2xct,2xcs,3l4j,3ltn,3foe,3fof,2xcr,4fm9,4gfh,2rgr,4koe,4i3h,4g0v,4kpf,4g0w,4juo,4j3n,4bul,3l4k,3raf,2xkk,4g0u,3rae,3rad,3ksa,3qx3,3ksb,3k9f,4kpe,5bs3,4plb" "PF00521.15" "31" "2.10" "2xcs.B_1033-1474.2xcs.pdb1.pdb"
"4qlc" "Linker_histone" "dna" "linker histone H1 and H5 family" "4qlc" "PF00538.14" "1" "3.50" "4qlc.U_24-97.4qlc.pdb1.pdb"
"4kd2" "Ribosomal_L12" "rna" "Ribosomal protein L7/L12 C-terminal domain" "4qs3,4qs1,4kbu,4kdh,4kdk,4kdb,4kcz,2gya,4kd9,1yl3,4kbw,2gyc,4kd2" "PF00542.14" "13" "3.50" "4kd2.e_59-122.4kd2.pdb1.pdb"
"1brn" "Ribonuclease" "dna" "ribonuclease" "1b2m,1jbs,1brn,1rnb,1jbt,1jbr" "PF00545.15" "6" "1.76" "1brn.L_20-109.1brn.pdb1.pdb"
"2fmt" "Formyl_trans_N" "rna" "Formyl transferase" "2fmt" "PF00551.14" "1" "2.80" "2fmt.A_4-183.2fmt.pdb1.pdb"
"1a3q" "RHD" "dna" "Rel homology domain (RHD)" "1a02,3qrf,1bvo,1s9k,1lei,1pzu,1le9,1owr,3gut,1p7h,1ooa,1gji,1ram,1imh,3do7,2o61,1a3q,1le5,2ram,2as5,1svc,1vkx,2o93,2v2t,1nfk,2i9t" "PF00554.17" "26" "2.10" "1a3q.B_40-220.1a3q.pdb1.pdb"
"2o5i" "RNA_pol_Rpb2_6" "hybrid" "RNA polymerase Rpb2, domain 6" "3iyd,3rzd,2ja6,3po2,2nvz,3gtq,2nvt,3s14,3how,2ppb,2b63,2ja7,1r9s,1i6h,1r9t,4a3k,3s17,3s2h,3m3y,3gtp,3gtm,5c44,3gtg,3po3,3m4o,2e2h,2e2i,2vum,1sfo,3gto,2r92,4a3b,3gtl,2r93,2yu9,2nvx,3hoz,3aoh,3gtj,2o5i,1y77,3gtk,3aoi,2e2j,1y1w,3hox,4v1m,5c4j,4v1o,4a3l,2o5j,4a3j,3s1m,4g7o,3s1r,3s2d,4a3c,4g7z,3s16,4a3e,4a3d,4a3m,3s15,3s1q,4q4z,4gzz,3i4n,3rzo,4v1n,4bbs,4g7h,4wqs,4gzy,4oiq,2r7z,4a93,4by1,4oir,4a3g,4bxx,3h3v,4oio,4a3f,4by7,4oin,4oip,4x6a,5c4a,4q5s,4xlr,5c3e,4x67,4yln,5c4x,4y7n,2ja8,2nvq" "PF00562.23" "97" "2.50" "2o5i.M_541-1026.2o5i.pdb2.pdb"
"4afy" "EAL" "rna" "EAL domain" "3u2e,4afy" "PF00563.15" "2" "2.01" "4afy.A_444-678.4afy.pdb1.pdb"
"5c0y" "HRDC" "rna" "HRDC domain" "5c0y" "PF00570.18" "1" "2.10" "5c0y.A_438-505.5c0y.pdb1.pdb"
"1vq8" "Ribosomal_L13" "hybrid" "Ribosomal protein L13" "4qjs,3j8g,3j5i,4rba,4byc,2zjq,4k0m,1vvm,4qd1,4kfi,3v6w,1vxl,2xg0,4nvv,3ccq,4kiz,3j5k,4qcx,4nw1,3j51,4kbu,4hub,3j50,3j56,4kd9,4kdb,4nvz,4k0q,3j5e,3j7z,3j5g,4tox,3j4x,4too,2xg2,4kj5,4kjb,3j5o,4kfl,4kdk,3j5u,3j3v,3cc7,3j52,4jux,4kix,4kj7,4l6l,3j3w,3j58,1vvs,4kdh,1vy1,4btd,4kj9,3j5w,4qcp,3j5a,4kj1,4ce4,3cc2,1vy3,4kd2,5aka,4w2b,1vxn,4rbi,4tp1,3j01,3ccs,3ccj,4qs3,1vxq,4pec,4w2d,4qcv,1vx9,4tp5,4kx2,4u67,3ccv,3cce,4rb6,4l6j,4tov,4tpb,3ccr,4rbe,4qs1,1vvy,4tpd,4tp3,1vxj,4tom,1vvo,3dll,4rbg,3ccu,4tpf,4tp7,4tp9,1vvw,4war,1vvu,4qct,4kx0,3pio,3g4s,4wwt,4rbk,3g6e,4peb,4qcz,1vw0,4uy8,4uk6,4wap,3g71,4wwe,3cpw,4v19,4rb8,1vvq,1vxt,4qcr,3v2f,3j37,4kj3,3r8s,3j19,3huz,3j5c,4ejc,4io9,3uyg,4g5u,3ow2,4gau,3izt,4kbw,4qcn,3r8t,3uzk,3i1r,3uzn,3v27,4csu,3oas,3v25,3j5l,3i1t,4ioc,4ioa,4g5n,4g5l,3v23,3zn9,4gar,2awb,4b8g,3v2d,4ejb,3zne,3kno,3pyo,1vow,1s72,3cxc,1vqp,2y11,3v29,3kit,3og0,4rbc,3uz2,3knk,3i56,3j0w,1nji,3pyv,2qbe,3ofc,3ohk,1kc8,2qbg,1s1i,2vhn,1vp0,3j54,2wrl,3ohz,3izu,2y15,2zjp,2qba,4abs,2gyc,1yl3,3d5d,3kir,2x9u,2zjr,2qbk,1k73,2qbi,2y0x,3cme,3i9c,3oh7,1qvf,3oi3,3i55,2i2v,3oi1,1vqo,2qam,3v6x,2qao,3uye,3hux,2qox,3i20,1vq7,2j28,1k9m,2y17,2aw4,1vou,2y19,3pyt,3ms1,3pyr,3mrz,1yij,3i22,2y0z,1q86,3j12,3pip,2y0v,2y13,2x9s,3uz1,1k8a,1q7y,3ofz,2wrj,3uzh,2v49,3ofd,4g5w,3d5b,3uz9,3f1f,3ccl,3e1b,3ccm,2otj,2xux,3uzf,3j11,3cma,1yjw,1vq4,3fik,3j14,3f1h,3kni,3uxr,1vqn,3zvp,3cf5,3sgf,1yit,3cc4,1yi2,3j0t,2b9p,1vq8,3j0y,1vs8,3cd6,3uz8,2qex,4bye,4dhc,2xtg,3tve,3bbo,4nvx,1vsp,4kcz,3tvh,4b8i,3uos,2vhm,1vt2,3kiy,2wro,3bbx,3i8i,2b9n,3knm,2wwq,1yhq,1vq9,1vor,1kd1,1qvg,1m1k,3df4,1vq6,3df2,3oh5,1w2b,2qp1,1vq5,1vsa,2wdl,1vql,2wh2,3orb,1vqk,2j01,2wdi,2wdn,2i2t,3j44,3j7y,1yj9,3oat,1q81,3oi5,3e1d,1yjn,3kiw,3o5h,1kqs,2otl,2z4n,3i1p,3i8f,3i9e,2wdj,3fin,2z4l,1vs6,2hgq,2qoz,4dha,2hgu,2hgj,2b66,3o58,2qbc,1m90,2wrr,3i1n,3ofq,1jj2,2qov,2j03,2gya,2xqe,1voy,1q82,2qa4,1vqm,3ofr,3kcr,2v47,3uxq,3ohj,2wh4" "PF00572.13" "374" "2.20" "1vq8.J_9-117.1vq8.pdb1.pdb"
"1vqo" "Ribosomal_L4" "rna" "Ribosomal protein L4/L1 family" "2wrr,2otl,2z4n,2z4l,2b9n,2wh2,3cce,1vq5,2j03,2b66,1yhq,2wh4,2v47,2qp1,3oi5,2xqe,2qoz,2qov,3fin,2j01,2wdn,2qbc,1vqk,1qvg,1vq9,2wwq,3uxq,3ohj,1yj9,1vq6,2wdl,1vsa,3knm,3oh5,2wro,2hgj,4tpd,4uka,4tov,4ul5,1vxt,3dll,1vvq,4tpb,4qs1,4ulk,4uki,5aka,4ul7,3ccu,4ukl,4l6j,4w2b,4uln,4ujx,4tp5,1vvo,4v19,4rbk,3j8g,4uk2,4tp1,4pec,3g6e,4ujg,1vxq,4ukx,1vxj,4peb,4war,4ujq,4rbi,4rb6,3ccs,4tp3,4ukn,4uk7,1vx9,4ujn,4wwe,4kx0,4ulf,4ulc,4tp7,4ul2,4qs3,4ujl,4w2d,4qcz,4ukg,4ujv,3g71,4ulq,4u67,4uks,4qcv,4qcr,3j01,4tp9,3g4s,1vxn,4rbg,3ccr,4ujs,4ul0,1vvw,1vvy,3cpw,4tom,3ccj,4uls,4rbe,3ccv,4kx2,1vvu,3pio,4qct,1vw0,4tpf,4wap,4rb8,4uy8,4wwt,4kcz,3j5a,4uk0,3j52,4kd9,1vy1,4uk5,3ccq,3j3v,4qjs,3j5u,3j56,4kfl,3j51,4jux,4kj1,3j50,3j5g,3j58,3j7z,4qcn,4nvz,4tox,1vy3,4ulh,3j5w,4rba,4kjb,4nw1,4kfi,4qd1,4ce4,4btd,4kbu,4k0q,3j5k,4kj5,4ukq,3j7y,3j5i,4hub,4kdb,4kiz,2xg2,3j3w,2zjq,1vw3,4byc,4kd2,4qcp,4kj9,4k0m,1vxl,2xg0,3v6w,3cc7,1vvs,4kix,4kdh,1vvm,4kj7,4nvv,4qcx,4l6l,3j5o,3cc2,3j5e,4ukv,4too,4ukc,4ula,4kdk,1q82,3i8i,3i55,3i8f,3i56,3j0y,3uz2,3i20,3i22,3ccl,1vow,3i1n,3ccm,1vou,2i2t,2i2v,4a1a,3i1p,3uz9,1vor,2xux,3uz8,1s1i,3f1h,1qvf,1q86,3i9c,3cma,1yit,3kni,1vqn,2otj,3j37,1yjn,1m1k,2vhm,1q7y,3e1d,2vhn,1m90,3j0t,4nvx,3uzf,4a17,2qex,3i9e,1q81,1yjw,3tve,2b9p,3cc4,3zvp,2qa4,1vqp,3j14,3bbo,1vs8,4a1e,2hgu,1yi2,2zjr,1vq8,2gya,2xtg,3d5d,2gyc,1w2b,1k8a,3f1f,3kiy,4bye,1k9m,1vt2,1vq7,1vqm,1kc8,1yl3,3sgf,3j11,3izu,3bbx,4csu,3uos,1jj2,4b8i,3cxc,3d5b,3df2,3df4,2hgq,1k73,3cf5,3tvh,4dhc,4uji,2zjp,3e1b,1vs6,3kiw,1vsp,3oat,4dha,1voy,3kit,1vp0,1kd1,3fik,1kqs,1vq4,3r8s,4g5n,4ejb,3zne,3o58,4kbw,2aw4,3ofq,4g5u,4g5w,3j19,4gar,3zn9,4gau,4b8g,3v2d,3v2f,4ioc,3i1r,3v25,3ofc,3v23,3izt,3ofr,3og0,2awb,3ofd,3v27,3ms1,3orb,3kno,3uxr,3uzn,4g5l,4ejc,3r8t,3j5c,3o5h,3uzk,3ofz,4ioa,3i1t,4io9,3v6x,4kj3,3uyg,3ow2,3huz,3j44,3oas,3mrz,3cd6,2wdi,2qba,3kcr,2qbg,3kir,3pyv,3j12,2y0v,4a1c,2wrl,3knk,3cme,1s72,3pip,3uye,2qbk,1vql,4rbc,3uz1,2x9u,3oi3,3pyr,2qbi,2wrj,3hux,1yij,2x9s,2wdj,3ohk,4abs,3j54,3v29,2y13,3oi1,2y15,3pyo,2j28,3j0w,1vqo,3ohz,2qbe,2y0z,2v49,3pyt,2qam,3oh7,2qao,2y0x,1nji,3j5l,2y11,3uzh,3j4x,2y17,2qox,2y19" "PF00573.17" "412" "2.20" "1vqo.C_16-246.1vqo.pdb1.pdb"
"2ix1" "S1" "rna" "S1 RNA binding domain" "2ix1,2c4r,3j81,3v11" "PF00575.18" "4" "2.74" "2ix1.A_557-640.2ix1.pdb1.pdb"
"1j1u" "tRNA-synt_1b" "rna" "tRNA synthetases class I (W and Y)" "2dr2,1j1u,2dlc,2rkj,2azx,2ake" "PF00579.20" "6" "1.95" "1j1u.A_24-300.1j1u.pdb1.pdb"
"2is6" "UvrD-helicase" "dna" "UvrD/REP helicase N-terminal domain" "3k70,1uaa,1w36,2is2,2is6,2is4,2is1,3u4q,3u44,2pjr,4cei,4cej,3pjr,4c2u,4ceh,4c30,4c2t" "PF00580.16" "17" "2.20" "2is6.B_10-272.2is6.pdb1.pdb"
"1h4s" "tRNA-synt_2b" "rna" "tRNA synthetase class II core domain (G, H, P, S and T)" "1h4q,1kog,1h4s,1qf6,1ser,2zni" "PF00587.20" "6" "2.85" "1h4s.A_46-220.1h4s.pdb1.pdb"
"1xo0" "Phage_integrase" "dna" "Phage integrase family" "5crx,3mgv,2crx,3c29,2a3v,3c28,1q3u,1crx,1z19,1pvr,3crx,1pvp,4crx,1drg,1ouq,1z1b,1q3v,1nzb,1f44,1pvq,1ma7,1xns,2hof,2hoi,1kbu,1xo0,1z1g,1p7d" "PF00589.17" "28" "2.00" "1xo0.G_138-331.1xo0.pdb1.pdb"
"2zko" "Flu_NS1" "rna" "Influenza non-structural protein (NS1)" "2zko" "PF00600.14" "1" "1.70" "2zko.B_1-70.2zko.pdb1.pdb"
"4wsb" "Flu_PB1" "rna" "Influenza RNA-dependent RNA polymerase subunit PB1" "4wsb,4wrt,4wsa" "PF00602.12" "3" "2.65" "4wsb.B_1-742.4wsb.pdb1.pdb"
"4wsb" "Flu_PA" "rna" "Influenza RNA-dependent RNA polymerase subunit PA" "4wrt,4wsb,4wsa,3j9b" "PF00603.12" "4" "2.65" "4wsb.A_19-710.4wsb.pdb1.pdb"
"4wsb" "Flu_PB2" "rna" "Influenza RNA-dependent RNA polymerase subunit PB2" "4wsb,4wsa,4wrt" "PF00604.12" "3" "2.65" "4wsb.C_1-741.4wsb.pdb1.pdb"
"4hly" "IRF" "dna" "Interferon regulatory factor transcription factor" "2o6g,2pi0,1t2k,1if1,2irf,2o61,4hly" "PF00605.12" "7" "1.48" "4hly.B_3-107.4hly.pdb1.pdb"
"2o5i" "RNA_pol_Rpb1_2" "hybrid" "RNA polymerase Rpb1, domain 2" "4ylo,3s2h,1y77,5c3e,4wqs,3s14,2ja7,3iyd,2ppb,2nvx,2e2h,5c44,3gtk,2yu9,2e2j,3gtq,4a3b,4yln,1i6h,1sfo,2nvt,4ylp,3rzd,2o5j,3gtj,2e2i,4g7o,3gtg,1y1w,2nvz,3s17,4a3j,1r9t,1r9s,3hov,2r93,3gtp,3hox,4q4z,3how,2ja6,3gtm,4g7z,2r92,3h3v,4oip,4by7,4b1p,4oiq,4oir,4bxx,4oin,4a3f,4oio,4a3i,4a3g,4x67,4s20,4q5s,5c4a,2ja8,4y7n,4xlr,5c4x,4y52,4x6a,2nvq,3aoi,3gtl,2o5i,4a3k,3aoh,2vum,3gto,4v1o,5c4j,4v1m,3s1n,3s16,4a3d,3s1r,4a3e,3s1m,3s15,3m3y,4gzy,4by1,3m4o,3s1q,3po2,3po3,3rzo,3s2d,4a3c,2r7z,4g7h,4v1n,4a93,4a3m,4a3l,4gzz,4bbs,3i4n" "PF00623.15" "103" "2.50" "2o5i.D_620-765.2o5i.pdb1.pdb"
"1orn" "HHH" "dna" "Helix-hairpin-helix motif" "3g0q,3fsq,1orp,3fsp,5dpk,4yoq,4ypr,4yph,1rrq,1orn,1vrl,1p59,1rrs" "PF00633.18" "13" "1.70" "1orn.A_100-129.1orn.pdb1.pdb"
"3g9y" "zf-RanBP" "rna" "Zn-finger in Ran binding protein and others" "3g9y" "PF00641.13" "1" "1.40" "3g9y.A_67-94.3g9y.pdb1.pdb"
"3d2s" "zf-CCCH" "rna" "Zinc finger C-x8-C-x5-C-x3-H type (and similar)" "3d2s,4csa" "PF00642.19" "2" "1.70" "3d2s.C_180-206.3d2s.pdb3.pdb"
"3od8" "zf-PARP" "dna" "Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region" "4opx,4oqb,4oqa,4av1,3odc,4dqy,3oda,3ode,3od8" "PF00645.13" "9" "2.40" "3od8.E_12-90.3od8.pdb3.pdb"
"3oym" "rve" "dna" "Integrase core domain" "3l2w,3l2v,3s3m,3l2u,3s3n,3s3o,3l2r,3oyi,4bdy,3oy9,3os0,3oyc,4e7l,4be0,4be1,4be2,3os1,3os2,4bdz,4e7h,3oyn,3oyh,3oyg,3oym,3oyl,3oyk,3oyj,3oyf,3oyd,3oya,4e7j,3oyb,3oye,4e7i,4e7k" "PF00665.21" "35" "2.02" "3oym.E_117-231.3oym.pdb1.pdb"
"1vq8" "Ribosomal_L5_C" "hybrid" "ribosomal L5P family C-terminus" "2qbi,1vqo,1vp0,3ohz,1q86,1yij,1q7y,3uzh,3uz2,2y11,3j0w,3pyo,4abs,2j28,2y15,3v29,2qbg,3j54,3pip,3oi1,3pyv,2y13,1s1i,3v6x,1vql,4a1c,4kbw,3kir,1vou,3pyr,2qba,2x9u,1vq7,2x9s,2vhn,2qao,2wrl,2qbk,3oi3,1qvf,3cme,1s72,3knk,3uye,3j12,2qam,2wdi,1nji,2y17,2qbe,2y0v,2wrj,2qox,3hux,2y0x,1mji,3j4x,2v49,1vow,3j5l,3oh7,4rbc,3uz1,3pyt,2y0z,3j5c,2y19,3ohk,3uxr,1vs8,3kiy,3i9e,2xux,1yjn,1m90,3df4,3i8i,3tve,1k8a,3kiw,1vsp,3j11,1k73,3uz8,3j0t,3bbo,3i56,1vqn,3j0q,3cf5,3oat,3f1f,4a1a,3e1b,3i20,3kit,2i2t,2otj,1jj2,1yl3,3ccl,3zvp,3fik,1yi2,1yjw,3kni,3sgf,3j37,2qex,3ccm,3uos,3f1h,3i22,1vqm,1vqp,1vt2,3d5d,2i2v,3i55,3i8f,1yit,3cc4,3uzf,2b9p,3cxc,3j14,3cma,4nvx,3uz9,3tvh,1vq4,1kqs,1vq8,3izu,3j0y,4a17,4a1e,1k9m,3i1p,3d5b,2zjr,2zjp,4dha,4dhc,2xtg,2hgq,4bye,1kd1,3i9c,3e1d,1m1k,1kc8,3df2,4g5w,3i1n,3ccs,4tpf,4rbi,4tp9,4peb,4ul0,4wap,4war,3pio,4tp5,1vvo,4qs3,5aka,4rbg,4tov,4tom,4u67,4kx2,4ujq,4w2d,1vxq,3cpw,1vw0,4ulf,1vvq,4wwt,4uka,3j01,1vx9,4ukg,4l6j,3dll,4ujl,3ccq,4qct,4qcr,4rbe,1vvu,4wwe,4rbk,4qcv,4ulq,1vvw,3g6e,4rb6,4w2b,4ulk,4kx0,3ccr,4tpb,4ul5,4tp1,1vxj,1vvy,3ccv,4pec,3ccj,1vxn,4ujg,4ukl,4ujv,4tp7,3ccu,1vxt,4qcz,3j8g,4tp3,3g4s,4qs1,4tpd,4rb8,4uy8,3g71,4byc,4uk0,4qcn,4kjb,4kdk,3cc2,2xg2,3j3v,3j5i,3j5o,4ukv,4kd2,4k0m,4kix,4qcp,3j5w,3j5g,4tox,3j5k,4hub,4qcx,4kj9,4kdb,1vvs,3cc7,4rba,4kj1,4kj5,1vy3,4jux,3j5u,4kd9,4ukq,2zjq,4nvv,4kfi,1vxl,3j56,3j58,3j51,3j50,3j5a,4kcz,4qd1,1vy1,4kbu,4ula,1vvm,4k0q,4uk5,3j7z,4nw1,4l6l,4kj7,2xg0,4qjs,4kdh,3j52,4kfl,4nvz,3j5e,3v6w,4btd,4kiz,4too,4ejc,3r8s,4ioa,3i1r,3uzn,3izt,4g5n,3v2f,3j19,3og0,3ofz,3ofq,3v25,2aw4,3ofr,4b8g,4gar,3ofd,3v23,4ioc,3r8t,3zne,3zn9,3v2d,4gau,4ejb,3j44,3ow2,2awb,3ms1,3v27,3orb,3ofc,4g5l,3huz,4g5u,3oas,4io9,4kj3,3mrz,3cd6,3i1t,3uyg,3uzk,3kno,3kcr,2vhm,2j03,1vs6,1vor,3oh5,1yhq,4csu,2hgj,2wdn,2qp1,2otl,1vq5,2z4n,3cce,2wro,2wh4,3uxq,2wrr,1vqk,2b9n,3o58,3fin,3ohj,1qvg,2qbc,2qa4,3knm,2j01,3bbx,2wh2,4b8i,2qov,2hgu,1voy,2xqe,1vq6,2b66,1yj9,1vq9,2wdj,2gya,1vsa,1q82,2wwq,2wdl,3o5h,2qoz,1q81,2v47,3oi5,2z4l,1w2b" "PF00673.16" "391" "2.20" "1vq8.D_68-148.1vq8.pdb1.pdb"
"2om7" "EFG_C" "rna" "Elongation factor G C-terminus" "3deg,2om7" "PF00679.19" "2" "7.30" "2om7.L_600-687.2om7.pdb1.pdb"
"3bso" "RdRP_1" "rna" "RNA dependent RNA polymerase" "4k50,4k4t,1uvk,4k4v,4k4u,4lq3,3ol9,1uvj,4wzm,3ola,4qpx,3bsn,4x2b,2jlg,3nma,1uvi,1wne,3ol8,3ol6,3olb,2ec0,3kna,4wzq,1hht,3h5x,1uvm,3h5y,1hi0,3nl0,1uvn,2e9r,2e9t,4k4x,2e9z,4k4y,4k4z,3kmq,4a8f,3ol7,3kms,4a8k,4k4w,4k4s,3koa,4a8y,4iqx,4a8w,4a8s,4a8q,1uvl,3klv,4a8m,3bso" "PF00680.15" "53" "1.74" "3bso.A_20-488.3bso.pdb1.pdb"
"4qvi" "Ribosomal_L1" "rna" "Ribosomal protein L1p/L10e family" "3j0p,3kcr,2xux,1mzp,2wdl,2j01,2wro,2wdn,2wh2,2wh4,4bye,3e1b,2xtg,2wrj,2wrl,3e1d,2wrr,2xqe,4b8i,2v47,1s1i,2wwq,2j03,3j0q,2v49,4csu,2vpl,2hw8,2noq,3knm,1zho,1vou,1vor,1u63,1vow,4btd,3j44,4byq,3j5g,3j56,4byc,3j50,3j5u,3v6w,2xg0,3j58,2xg2,3j54,3j5i,3j5a,4kdk,3j52,4k0m,4jux,3j5e,4kdh,3j4x,4kd2,4kcz,3j3w,3j5w,3j5k,3j46,4kbu,3j3v,3j51,4k0q,2om7,3j5s,4kd9,4kdb,4ejc,2y0z,2y0v,2x9u,2y17,4kbw,2x9s,4abs,2y0x,2y15,2wdi,2y13,2y19,2y11,2wdj,3o58,3huz,3j37,3j11,3izt,3izu,3kir,3umy,3j12,3bbo,1vp0,3j5c,2gya,2gyc,1vsp,3v6x,3j14,3o5h,1voy,3u4m,3kno,1vsa,1yl3,3kni,3j0t,4b8g,3u56,3j0w,3j0y,3hux,3kiw,3zn9,3kit,2hgj,3knk,3kiy,3fik,3zne,2hgq,4ejb,2hgu,4qg3,4qs1,4tp1,4tov,4tpd,4tp5,4wap,4qs3,4peb,3j01,4tp9,4wwt,3j8g,4wwe,4tom,4qvi" "PF00687.16" "143" "1.90" "4qvi.A_8-221.4qvi.pdb1.pdb"
"3snp" "Aconitase_C" "rna" "Aconitase C-terminal domain" "3sn2,3snp" "PF00694.14" "2" "2.80" "3snp.A_692-821.3snp.pdb1.pdb"
"3k4x" "PCNA_N" "dna" "Proliferating cell nuclear antigen, N-terminal domain" "3k4x" "PF00705.13" "1" "2.98" "3k4x.A_253-393.3k4x.pdb1.pdb"
"3bep" "DNA_pol3_beta" "dna" "DNA polymerase III beta subunit, N-terminal domain" "3bep" "PF00712.14" "1" "1.92" "3bep.A_1-120.3bep.pdb1.pdb"
"2tmv" "TMV_coat" "rna" "Virus coat protein (TMV like)" "2om3,1rmv,1vtm,2tmv,1cgm,2xea,4udv,5a79,5a7a,3j06,3pdm" "PF00721.16" "11" "2.90" "2tmv.P_1-145.2tmv.pdb1.pdb"
"4fy5" "Viral_coat" "rna" "Viral coat protein (S domain)" "4fy7,4fya,4fy9,4fy3,4fy1,4fy4,4fy5,4fy6,4fy8,4fy2" "PF00729.13" "10" "2.90" "4fy5.K_54-238.4fy5.pdb1.pdb"
"4b21" "HhH-GPD" "dna" "HhH-GPD superfamily base excision DNA repair protein" "3oh9,3cwu,3fsq,3cvs,2nol,1orp,2noz,3g0q,3cwa,2i5w,3fsp,4b24,3i0w,1yqm,3s6i,1fn7,3cws,3d4v,3cvt,1ebm,3cwt,1m3q,1lww,4ea5,4evv,4ejy,1hu0,1lwy,3cw7,1m3h,1lwv,1n39,1n3c,1diz,1n3a,4e9f,4e9g,4e9h,3knt,4ea4,4ew4,4b21,4ejz,3oh6,4b23,4dk9,4ew0,4hsb,1rrs,1yqr,3ktu,1vrl,1p59,3ih7,4b22,3i0x,2noh,2noi,2nob,1rrq,3ogd,1yql,1orn,1yqk,2noe,2nof,4ofe,4ofh,2xhi,4ofa,4yoq,4yph,4ypr,5dpk" "PF00730.20" "74" "1.45" "4b21.B_46-193.4b21.pdb1.pdb"
"3ra4" "Parvo_coat" "dna" "Parvovirus coat protein VP2" "4dpv,4g0r,1mvm,3ra9,3ra4,1ijs,1z1c,1p5w" "PF00740.13" "8" "2.70" "3ra4.A_220-716.3ra4.pdb1.pdb"
"1n78" "tRNA-synt_1c" "rna" "tRNA synthetases class I (E and Q), catalytic domain" "2dxi,3al0,3akz,1n78,1n77,2cv1,1g59,2cv0,2cv2,2rd2,4jxz,4jyz,4jxx,1o0c,1zjw,1o0b,1qtq,1qru,1gts,1qrs,1euy,2re8,1gtr,1exd,1euq,1qrt" "PF00749.16" "26" "2.10" "1n78.B_1-312.1n78.pdb2.pdb"
"2zue" "tRNA-synt_1d" "rna" "tRNA synthetases class I (R)" "2zue,2zuf,1f7v,1f7u" "PF00750.14" "4" "2.00" "2zue.A_368-493.2zue.pdb3.pdb"
"4yj0" "DM" "dna" "DM DNA binding domain" "4yj0" "PF00751.13" "1" "3.81" "4yj0.B_72-118.4yj0.pdb1.pdb"
"1rxw" "XPG_N" "dna" "XPG N-terminal domain" "4q0z,4q0w,4q10,3q8l,3qe9,3qea,3qeb,3q8m,3q8k,1rxv,1rxw" "PF00752.12" "11" "2.00" "1rxw.A_7-101.1rxw.pdb1.pdb"
"5a0t" "Lactamase_B" "rna" "Metallo-beta-lactamase superfamily" "3ie1,5a0t,5a0v" "PF00753.22" "3" "2.28" "5a0t.B_27-237.5a0t.pdb2.pdb"
"2vye" "DnaB" "dna" "DnaB-like helicase N terminal domain" "2vye" "PF00772.16" "1" "4.10" "2vye.H_1009-1111.2vye.pdb1.pdb"
"2vnu" "RNB" "rna" "RNB domain" "2vnu,2ix1,5c0x,5c0w,4pmw,4ifd" "PF00773.14" "6" "2.30" "2vnu.D_531-863.2vnu.pdb1.pdb"
"3k62" "PUF" "rna" "Pumilio-family RNA binding repeat" "3q0o,3q0m,3q0r,3bx3,1m8y,1m8x,1m8w,3k5z,3k5y,3k61,3bsb,2yjy,3k49,4dzs,3k5q,3qg9,3bx2,3qgb,3qgc,3k4e,3bsx,3v6y,3v74,3k64,3k62,5bym,5bz5,5bzv,5bzu,5bz1,3q0q,3q0l,3q0n,3q0s,3q0p" "PF00806.14" "35" "1.90" "3k62.A_351-376.3k62.pdb1.pdb"
"4g92" "CBFD_NFYB_HMF" "dna" "Histone-like transcription factor (CBF/NF-Y) and archaeal histone" "4awl,4wzs,1jfi,4g92" "PF00808.18" "4" "1.80" "4g92.C_85-149.4g92.pdb1.pdb"
"4ecq" "IMS" "dna" "impB/mucB/samB family" "3gv5,3h4d,2aq4,4ed2,3gqc,3ngd,3bq1,2w7p,3khl,3pw0,3pw7,2uvr,3oha,2bq3,2agp,2ia6,2xc9,2rdj,2va3,1s0o,3ohb,1jxl,2au0,2bqr,2w9c,2j6t,3g6x,3g6y,3si8,3gv8,3m9o,2v4q,2agq,3mfh,1s97,2r8g,1s10,2jej,2w7o,2w8l,3epg,2c2r,2fll,2c28,3khg,2fln,3g6v,2imw,2dpj,3m9m,3bq0,2w9b,4rzr,4gc6,3h4b,3in5,2xgq,2v9w,2r8j,3osp,3q8q,4irc,2oh2,3m9n,2xcp,2wtf,4yr2,3bjy,2uvw,2asd,3pr5,2flp,1rys,2br0,3mfi,2asj,3pvx,3rax,3pw2,2c2e,2ibk,3pw5,2xgp,2c22,1s9f,2bqu,2jei,2j6s,2r8i,3pr4,2r8k,2v4r,2uvu,2ago,1n56,2r8h,3pzp,3qz8,3gv7,3q8r,2alz,2w8k,2j6u,3khh,1s0m,3q8p,1ryr,3qz7,2uvv,3osn,2jeg,4ird,4f4w,4j9n,4j9m,4g3i,4o3n,4f50,4o3s,4o3q,4o3o,4jv0,4j9l,4j9p,4qwe,4dl4,4jv2,4dl7,4jv1,3rbe,4fbu,3raq,4o3p,4j9k,4qwd,3rb4,4o3r,4qw8,4nlg,4j9q,4ir1,4fbt,4j9s,4juz,4dl3,4j9r,4eey,4ed7,3v6h,4ecu,3rb6,3rbd,4dl2,2jef,4gc7,4fs2,3t5l,4ebd,4q43,4ir9,4ecw,4irk,4ecs,4ed1,4ecq,4ed0,4ecz,4ed6,4eyi,3rb3,3epi,2dpi,2va2,4f4y,3t5k,3v6j,4eyh,4ecx,3t5h,4ecy,3rb0,3v6k,4ed8,4fs1,4dl6,4ecr,3bq2,4ebe,4ect,3gii,3mr5,4j9o,3khr,3mr2,3pw4,2w9a,4ebc,2xca,1s0n,3mr6,3gil,4ed3,2atl,2asl,3gij,3gim,4f4x,3q8s,1zet,3t5j,3mr3,3h40,1n48,4ecv,3tq1,3gik,4yr0,1jx4,4ruc,4ru9,4q45,4tqs,4yp3,4q44,4r8u,4rnm,4qwb,4q8e,4qwc,4rnn,4rua,4tqr,4yqw,1t3n,4dl5,4rno,4yr3,4qwa,4qw9" "PF00817.15" "239" "1.50" "4ecq.A_12-228.4ecq.pdb1.pdb"
"3q1q" "Ribonuclease_P" "rna" "Ribonuclease P" "3q1r,3q1q" "PF00825.13" "2" "3.80" "3q1q.A_6-116.3q1q.pdb1.pdb"
"1vq8" "Ribosomal_L15e" "hybrid" "Ribosomal L15" "1k9m,1vq7,3i55,1qvf,1q7y,1vqp,1vqo,4a1c,1s1i,1s72,1yij,3i56,1k73,3cme,1k8a,1nji,1kc8,1q86,3cxc,3ccu,3ccm,3g4s,3ccj,3cce,3ccs,3g71,3cpw,3g6e,3ccv,3ccr,3ccl,1m90,2otl,1w2b,1m1k,1vql,1vqk,1vq9,1kqs,1yhq,3o5h,1qvg,2qa4,3o58,1vq6,1q81,3cd6,1q82,1yj9,1vqm,1yjn,1jj2,1vq5,1kd1,3cc7,3j44,4hub,3cc2,1n8r,3ccq,3ow2,2otj,4a1e,4a17,3cc4,1vqn,1yi2,4a1a,1yit,1vq8,2qex,3cma,1vq4,1yjw" "PF00827.12" "74" "2.20" "1vq8.M_3-192.1vq8.pdb1.pdb"
"1vqo" "Ribosomal_L18e" "rna" "Ribosomal protein L18e/L15" "4kcz,1vq4,3cc4,4nvx,4b8i,2otj,3tve,3e1b,3e1d,1vsp,3uz9,1yi2,4kbw,3j11,3j14,3j0y,3kni,3j0t,1vqn,4kd9,3ccq,2xtg,3ccm,3fik,3uos,3sgf,4bye,3j5l,3cma,3bbo,2qex,3f1h,1vs8,3j4x,3d5b,3f1f,3tvh,3cd6,4dhc,1yit,2xux,1yjw,2b9p,3cf5,3zvp,3uzf,3uz8,1vq8,1vq9,2wdn,3o5h,1kd1,2b66,3fin,2hgq,1w2b,2wrr,1vq6,3ofr,2gya,3orb,1vqk,2j03,3uxq,3knm,2i2t,3oat,2z4n,3df2,1vq5,2wwq,1vsa,1vs6,2qa4,1vt2,3i1n,4dha,3o58,2qoz,2zjp,3kcr,3bbx,1m1k,1q81,2z4l,1kqs,2qp1,3j7y,1vql,3i1p,2wdi,3ofq,2j01,2xqe,3ohj,1m90,3i9e,1yhq,3i8f,2otl,1qvg,1voy,2wdl,1yjn,1jj2,2wdj,3kiy,2wh2,2v47,2wh4,3kiw,2vhm,1vor,1q82,2b9n,1yj9,1vqm,2hgj,2qbc,1yij,3i8i,2wro,3oh5,2qov,2hgu,3df4,3oi5,3mrz,3i22,2j28,2vhn,3pyv,3i55,1qvf,3oh7,1kc8,3cme,2gyc,2qba,2y15,2y0v,2qam,1vow,3uxr,3cxc,1vq7,2zjr,4qcn,1vou,3kir,3oi1,2qbg,3oi3,3ofz,4rbc,3uzh,3pyr,2y11,1s72,2i2v,3kit,3pyo,3ms1,3ofc,3ohk,3v29,3pip,1vp0,2aw4,4g5w,3j54,2qao,1k73,3pyt,3ofd,1s1i,2qbi,3i56,2x9s,1k8a,3uz2,1nji,3d5d,2y0z,3i9c,2y13,3izu,2v49,2y0x,2y19,3uye,1k9m,3og0,1vqp,4abs,1vqo,3j0w,2wrl,2y17,3hux,2x9u,3uz1,2wrj,2qbk,2qox,2qbe,1yl3,1q86,3ohz,3i20,3j12,3knk,1q7y,3g6e,3ccs,4tpb,3ccr,3ccu,1vvu,4qcv,4uy8,4tp3,4wap,4tov,4tp7,3g4s,4tpd,4rb6,3ccv,4rbg,4rbk,4tp1,1vxt,4qs3,5aka,3cce,4pec,4tpf,1vxn,4qcr,3pio,3ccj,4kx2,4w2b,3cpw,4qcz,1vvy,1vxq,4w2d,4tp5,1vvq,3ccl,4qct,4tp9,1vx9,1vxj,1vvw,4wwt,4kx0,3g71,4v19,4l6j,4war,4rb8,4rbi,4wwe,4tom,1vvo,3j8g,4peb,3dll,4u67,4rbe,4qs1,1vw0,3j01,3v23,3ow2,3zne,4ejc,3j37,3v2f,2awb,3izt,3v6x,4csu,3uyg,3i1r,3j5c,3oas,4ejb,4gar,4g5l,4g5n,3j7z,3uzn,3j19,3huz,4ioc,3r8t,4io9,1n8r,3i1t,3r8s,3v2d,4b8g,4kj3,3kno,3v27,3zn9,3uzk,3v25,4g5u,4ioa,4gau,4too,3j58,4kfi,3j51,1vxl,3j56,3j5a,4nvz,4qcx,2xg0,4byc,4rba,4qd1,1vvm,4kiz,4kbu,1vy1,4nvv,4l6l,3j44,4kfl,4btd,4kj7,3j5e,4nw1,3j50,4ce4,4kdh,3j52,4k0q,4kj9,3cc7,4hub,1vvs,3j5k,4qjs,3j5g,4qcp,4k0m,3cc2,3j5o,4kj5,4kjb,4kdb,4kj1,2xg2,3j5i,1vy3,2zjq,3j3v,3v6w,4tox,3j5u,4kd2,4kdk,3j3w,3j5w,4kix,4jux" "PF00828.14" "374" "2.20" "1vqo.O_22-99.1vqo.pdb1.pdb"
"4rb6" "Ribosomal_L21p" "rna" "Ribosomal prokaryotic L21 protein" "4kj7,4kdh,3j5k,3j52,3j5o,3j7y,2xg2,3j5e,4ce4,3j3v,4kdb,1vvs,3j5g,4kfl,3j5u,3j4x,3j51,4nvz,4kd2,1vy3,4qcx,4jux,1vvm,4rba,1vy1,4kbu,4nw1,4kjb,4nvv,3j3w,4too,4kdk,2xg0,4kix,4byc,4qjs,3j50,4kfi,3j5i,4l6l,3j5w,4kj1,4kj5,4k0m,3j5a,4btd,3j58,4tox,3j56,4rbc,4kiz,3v6w,4kj9,2zjq,4k0q,2qbk,2x9s,2wrl,3i9c,3uxr,3uzh,3pyr,3hux,3ms1,2y13,4abs,2zjr,1vxl,2vhn,1vou,2qam,3ofd,2j28,2y11,3pip,2i2v,3og0,2y19,1vp0,1vow,4qd1,3izu,3zvp,3i22,2y15,3kit,3i20,1yl3,2y0z,3v29,3uye,3knk,2qbg,3pyv,2wrj,3uz2,4qcp,4g5w,3pyt,3ofz,3mrz,3j0w,3ohk,2qao,3ofc,2y17,2qox,2qba,2y0v,2qbi,2y0x,3ohz,2v49,2qbe,3oi3,3pyo,3oi1,3oh7,3d5d,3uz1,2x9u,2xtg,3cf5,4nvx,4bye,3fik,3bbo,3j7z,3f1f,3j11,3j19,1vsp,3uz8,3j0t,3e1b,4dhc,3tve,4kd9,2b9p,3e1d,3tvh,3uos,3sgf,2xux,3j14,4kcz,3uzf,3j0y,4b8i,3f1h,3kni,3kcr,3oi5,1vs8,2xqe,3i9e,2wwq,3bbx,2vhm,4dha,3i1n,3uz9,1vt2,1vs6,3uxq,2qoz,3j5l,2wdj,2zjp,3ohj,3knm,3kiw,3df4,3d5b,3ofr,4qcn,1vsa,4kbw,3kir,3i8i,2z4n,2b9n,2j03,1vor,2wdn,2wro,3orb,2hgu,2qbc,2wdl,3fin,2z4l,3oat,2hgj,3j54,2hgq,2aw4,1voy,2qov,3i1p,2b66,2v47,3oh5,2j01,3df2,2qp1,3ofq,2wh4,2wh2,3kiy,2wrr,3i8f,2i2t,3j12,2wdi,3j5c,4gau,3uyg,4g5u,3i1r,3r8s,4io9,4g5n,4ioc,4b8g,3uzk,4g5l,3kno,3zn9,4ejc,4ioa,3v6x,3oas,3huz,3j37,3r8t,3izt,3v23,3zne,2awb,3v2f,3v2d,4gar,4kj3,3uzn,3v25,4csu,4ejb,3v27,3i1t,4war,1vxj,4rb8,4w2d,4kx2,1vxn,1vx9,3pio,4u67,4tpd,4w2b,1vvy,4tom,4qs1,4l6j,4qcz,4tpf,3dll,1vvq,4tp5,1vw0,4rbg,3j01,4wwe,4tp9,4tpb,4rbi,4v19,4uy8,4qcv,1vxq,4rbe,4wap,4qcr,4kx0,1vvw,4wwt,4rb6,5aka,1vvu,4tp1,4rbk,4pec,1vxt,4tov,3j8g,1vvo,4tp3,4peb,4qct,4tp7" "PF00829.16" "301" "2.40" "4rb6.V_1-94.4rb6.pdb1.pdb"
"4rb8" "Ribosomal_L28" "rna" "Ribosomal L28 family" "1vx9,4tpb,1vw0,4wwt,4rbi,4rbg,4qct,4qcv,1vxq,4tp7,3dll,4wwe,3j01,4rb6,4tov,4rbe,4tp5,1vvo,4qcz,4qcr,1vvy,1vvw,4tpf,4l6j,3j8g,4tpd,4rb8,1vvu,4peb,4tp1,4war,4u67,4w2d,4pec,4tp9,4wap,1vvq,4kx0,4kx2,4tom,4qs3,1vxt,1vxj,1vxn,4w2b,3pio,4uy8,4rbk,4tp3,4qs1,3v27,2v49,2wdj,3j14,2wh4,2y0x,4dhc,2y0v,3j11,3bbo,2v47,4kd2,4bye,4nvx,1vsp,2j03,3v2d,2xtg,3tvh,3uzf,3fik,2wh2,3uz8,3cf5,3tve,3zvp,3v2f,2y17,2y19,3j0y,2j01,2y11,3i1r,2x9s,3j19,2y15,2x9u,3f1h,2y0z,4kd9,3j7z,3j0t,3f1f,3kni,2y13,4qjs,4too,3j4x,4kfi,4csu,3v6w,2zjq,4k0q,3j50,4jux,3j5g,3j5e,2xg2,4kiz,4ce4,4kbu,4nw1,4kj1,4kdh,4k0m,4qcp,1vvm,3j5u,1vy3,4nvz,3j5i,4kj5,3j56,4nvv,4kjb,4qcx,1vxl,3j52,4kfl,3j51,4byc,4tox,3j5k,3j54,1vvs,3j5a,3j58,4kj7,4kdk,4btd,4rba,3j5o,4kix,4kdb,3j5w,4kcz,4rbc,4l6l,4kj9,2qbe,2i2v,4qd1,3pyr,4qcn,2wdi,3i22,3og0,3v29,3j7y,3i20,3uz1,3pyo,2zjr,3pyt,2qbk,3j0w,3pyv,3izu,2qbi,3kit,2qbg,3ofz,3uye,3pip,3i9c,3r8t,3mrz,3uz2,3ofc,3ms1,3ofd,3d5d,3hux,4abs,3uzh,3knk,4g5n,4gar,3uos,3oh5,3izt,4ioc,3uzn,3v6x,3j5c,3kno,3ohj,4gau,3uzk,4ejb,4b8g,4g5l,4ioa,3oas,4b8i,3v25,3oh7,3i1t,3zne,3sgf,3r8s,4kbw,3uyg,2wrl,3ohz,2wro,3v23,3oi3,2wrr,2xux,3oi1,2xqe,3j37,2wwq,2xg0,2wdn,3ohk,3zn9,4io9,2wdl,4kj3,3huz,2wrj,4g5u,3oi5,1vsa,2zjp,3oat,3j12,3i8i,3i1n,1vt2,3orb,3df4,3ofq,3fin,3i1p,3knm,3uxq,3j5l,2z4n,3uxr,3ofr,4dha,3d5b,3df2,2i2t,2qba,3i9e,2z4l,3kiw,3kiy,2qam,2qoz,2qox,2qp1,3uz9,2qov,4g5w,2qbc,4ejc,3i8f,3kcr,2qao,3kir" "PF00830.14" "275" "2.40" "4rb8.1_3-71.4rb8.pdb1.pdb"
"1vq8" "Ribosomal_L29" "hybrid" "Ribosomal L29 protein" "3bbx,1vq9,3uxr,1jj2,1vq6,1q82,1q81,1vqm,1yhq,2hgq,3i1p,2z4l,2qbc,2gya,2aw4,1kd1,2hgj,1m1k,1nji,1voy,3cd6,3cc4,3kcr,3o5h,1vqk,2b66,2qp1,1w2b,3knm,3kir,2zjp,2vhm,1yj9,3df4,3fin,2z4n,1vor,3i8i,3i1n,3o58,1vsa,2qov,3i9e,1vs8,3d5b,3uxq,3i8f,2qoz,4dha,2hgu,2b9n,3kiw,1vt2,2i2t,4g5w,3kiy,1vq5,3ofr,1m90,1vs6,3uz9,3j5l,4ejc,1vql,3oat,1yij,1kqs,3orb,1qvg,3ofq,3j12,2otl,2qa4,1yjn,3df2,3j50,4rba,4hub,3j5k,3j46,4tox,4kfi,4kj5,3j5a,3j52,4kj7,3cc2,4rbc,4qcp,4csu,4kiz,4kjb,2zjq,3j3w,4nvv,3j5w,3v6w,3j5g,4jux,1vy3,4kj9,3j54,3j5i,4kdb,3j5o,2xg2,4kix,4kj1,3j3v,3j45,3j56,4l6l,4kd2,3ccq,1vvm,3cc7,3j5u,3j58,1vvs,4kdk,4byc,4k0m,4kbu,4nw1,4qjs,3j51,4qcx,4btd,3j4x,4kdh,4kcz,4k0q,1vy1,4kfl,1vxl,4too,3j5e,4nvz,3j8g,1vxq,4peb,4qcr,4tpb,4tp1,4wwe,3g6e,1vxt,4u67,3ccv,4qs1,4kx2,1vw0,1vvq,4tp5,4rbk,4qct,3g71,4tpd,3dll,4pec,3pio,4qcz,4rbg,4war,3ccr,3cce,4qcv,1vx9,3g4s,4rbe,4wap,4rb6,3j01,1vvy,1vxj,4wwt,4tom,4qs3,4tp9,4w2d,4w2b,4rb8,4tpf,1vvu,3ccu,4uy8,1vxn,4rbi,4tp7,1vvo,3ccs,3ccl,5aka,3ccj,4kx0,4tov,1vvw,4l6j,4tp3,1vsp,2wro,3j11,2wrl,2wrr,4nvx,2wdn,3j0y,2wrj,4bye,2wh4,2otj,2wwa,4a17,2x9s,3v2f,2wh2,1yit,1yjw,3j7z,3e1b,3f1h,4a1e,2x9u,3fik,3tvh,3e1d,2qex,3uos,3f1f,3i1r,2y19,4kd9,2y17,3j19,2y15,1vq4,2xux,3ccm,2b9p,3uzf,1yi2,2ww9,3kni,3j14,3cma,3sgf,1vqn,2y11,2j01,3uz8,2xtg,2xqe,4dhc,3v27,3cf5,3v2d,2v49,2v47,2wdj,3bbo,2wdl,2y0v,2y0x,3j0t,2j03,2y13,3tve,2y0z,3uzk,3oas,4io9,3kno,3izt,4b8g,4g5l,4ejb,4b8i,2wwq,4gar,3j5c,4kj3,4g5n,3huz,4ioc,3uzn,2awb,3j37,3zvp,3v23,1n8r,3zn9,3i1t,3r8s,3zne,3v25,3oi5,3oi1,4kbw,4gau,4g5u,3v6x,3uyg,3oh7,3oi3,3ohk,3ohj,3oh5,3ow2,2xg0,3ohz,4ioa,3cpw,2d3o,1qvf,3mrz,1k9m,1q86,3i20,3pyo,3og0,2zjr,3ms1,3j0w,1vou,1vqp,3ofz,1vqo,2qbk,3i55,3i22,3ofd,1s1i,3izu,3knk,3kit,3r8t,3uye,1k8a,2qbi,3i9c,3i56,4a1a,1vp0,1vq8,2qao,3pyt,2qbe,1q7y,2wwb,3v29,2qox,1k73,3d5d,3ofc,2i2v,4qcn,3uz2,4abs,3uzh,3uz1,3cxc,3pyr,2j28,4a1c,3hux,3pip,1vq7,1vow,1s72,2vhn,3cme,3pyv,2qbg,2gyc,2qba,4qd1,1yl3,2qam,1kc8,2wdi" "PF00831.18" "380" "2.20" "1vq8.V_5-63.1vq8.pdb1.pdb"
"1vq8" "Ribosomal_L39" "hybrid" "Ribosomal L39 protein" "1vq7,3cme,3i55,1vqo,1q7y,1vqp,1k73,3cxc,1k9m,3i56,4a19,1k8a,3g6e,3ccr,3ccl,3ccj,3ccs,3cce,3g4s,3ccu,3g71,3ccv,1q82,1qvg,1yhq,1qvf,1q86,1vq9,1vq8,2otl,1vqk,1m1k,2qa4,1q81,1s72,3cc4,1m90,1jj2,1yjn,3o5h,1vq6,3o58,1vqm,1vq5,1kd1,1yj9,1vql,1kc8,1nji,1kqs,3cd6,3cc2,3cc7,4hub,3ccq,3cpw,3ccm,1yi2,2otj,1yit,1vq4,4a18,2qex,4a1d,1vqn,3cma,4a1b,1yjw,2wwb,1yij,1n8r,2ww9,2wwa,1w2b,3ow2" "PF00832.15" "75" "2.20" "1vq8.2_7-49.1vq8.pdb1.pdb"
"4ujr" "Ribosomal_S17e" "rna" "Ribosomal S17" "4bpo,4ule,4bpn,3j20,4kzx,4w23,2xzm,3jam,2xzn,4bpe,4ukm,3o2z,3o30,4ujf,1vxw,4ujw,4ukp,4ukf,4ulp,4ujz,4uku,1vwv,4ul1,4ujp,4d61,4uk6,4uju,4ulg,4ul4,4ulm,4ukw,4d5l,4ul9,5a2q,4uk9,3j80,4ujh,4uk4,4uq5,4ukb,4ukr,4ulb,4ukk,4ulj,4uk1,3j7a,4ujm,4bpp,4kzz,1vx2,1vx5,4ukz,3j81,4ul6,4kzy,4ulr,4uq4,3j43,4ujk,1vw9,4cxc,1vxz,4w28,4ukh,4ujr,4uer" "PF00833.13" "66" "2.80" "4ujr.v_2-122.4ujr.pdb2.pdb"
"4gv3" "Arena_nucleocap" "rna" "Arenavirus nucleocapsid protein" "3t5q,4g9z,4gv3,4gv6,4gv9,3t5n,4fvu" "PF00843.12" "7" "1.68" "4gv3.A_357-544.4gv3.pdb1.pdb"
"3igm" "AP2" "dna" "AP2 domain" "3igm" "PF00847.15" "1" "2.20" "3igm.A_64-117.3igm.pdb1.pdb"
"4lgt" "PseudoU_synth_2" "rna" "RNA pseudouridylate synthase" "2i82,3dh3,4lgt" "PF00849.17" "3" "1.30" "4lgt.A_68-202.4lgt.pdb1.pdb"
"4l18" "Runt" "dna" "Runt domain" "3wtv,4l0z,3wtx,3wtt,3wtw,3wu1,4l18,3wty,3wts,3wtu,4l0y,1io4,1hjc,1h9d,1hjb" "PF00853.14" "15" "2.30" "4l18.A_53-192.4l18.pdb1.pdb"
"1vq8" "Ribosomal_L18p" "hybrid" "Ribosomal L18p/L5e family" "3j3v,3j5g,3v6w,4ukq,4kj5,3cc7,1vvs,4jux,3j5e,3j44,4tox,4kd2,3j5w,4uk0,4kix,3j5u,4qcx,4uk5,4kj1,3j5k,4kdk,3j51,3j58,4hub,3j56,4ukv,4kfl,1vvm,1vy3,4kj7,4nw1,4kfi,4nvz,4qcp,4l6l,3j5i,2xg0,3j50,4kdb,4too,3j5a,3j5o,4kj9,4byc,4nvv,4btd,2xg2,1vy1,3cc2,3j7y,4kjb,4kbu,4ulh,4ula,4rba,4qjs,4kdh,3j52,4rbc,4kiz,2zjq,4k0m,4ukc,4k0q,2y0x,2i2v,2qox,3ofz,1kc8,1k73,2v49,3cme,2y19,3oi1,3i56,2y13,2vhn,3uye,3pyo,3pyt,2y0v,3hux,3uz2,1k8a,3j54,3uxr,1s1i,3uzh,3kit,4qd1,2qbi,2x9s,2gyc,3ohk,3j0w,3d5d,4a1c,3izu,3uz9,3mrz,3pyv,3i9c,3ofd,3oi3,1nji,1vp0,3pyr,3ofc,3j12,3pip,2y0z,3v29,2qbg,3ohz,2qba,1vqo,2wrj,1vou,1s72,3cxc,2y15,3i22,2qao,2zjr,4abs,3uz1,4g5w,2j28,3i55,3d5b,1vqp,1k9m,2wrl,1qvf,2y17,1vq7,2qbk,1yl3,1vow,2y11,3i20,2x9u,3oh7,1vxl,2qbe,3og0,2qam,1q7y,3ms1,1q86,3knk,4qcn,4ioc,3j19,3v6x,3ow2,3zn9,3j4x,3izt,3r8s,3huz,3uyg,4gau,3v25,3r8t,4io9,3j5c,3zne,4g5u,4ioa,3uzn,4ejb,4b8g,3oas,3v23,3j37,4g5n,3i1r,3uzk,3kno,2awb,3v27,3i1t,4g5l,3j7z,3o58,3o5h,3v2f,3v2d,4gar,4kj3,4ul7,3ccm,4qct,4rbe,4rb6,4wwe,3g4s,4tpb,1vvw,3ccr,4qcv,4qcr,1vvy,1vxj,4tp7,3cpw,3ccu,1vxt,4uk2,3ccl,4rb8,3pio,3g71,4qcz,4ujg,4ul5,4ujv,4uk7,4ukl,4uki,4tp1,4kx0,3cce,4ujx,4uln,4wwt,1vxn,1vvu,4ul2,1vw0,4tpd,4tp3,4ulq,4uls,4ul0,4pec,4tp9,4ukg,4uks,4ukx,4l6j,4tp5,3ccj,4ulc,5aka,4qs1,4tpf,4rbg,4rbk,3ccv,4tom,4w2d,4uka,4qs3,4war,4ulf,4uy8,3ccs,4ujl,4ulk,4peb,4ukn,3j8g,4kx2,3dll,1vvq,4wap,4w2b,1vx9,4rbi,3j01,4ujq,4u67,4tov,4ujs,1vxq,3g6e,1vvo,4ujn,1vs6,3orb,1yjn,2qa4,3fin,2aw4,3ofq,1q81,2qbc,2b9n,1q82,1kqs,1vql,3i1p,3oi5,1vq6,1yij,3ohj,2v47,1vq5,2hgu,2zjp,1vsa,1vt2,3ofr,4dha,2otl,1yhq,2wh2,2qoz,3i9e,3kiw,1vs8,3oh5,2xqe,3kcr,3df2,3i1n,1m90,2qov,3i8f,2wdi,3uxq,1kd1,2wh4,2wdj,2wrr,1w2b,2vhm,3kiy,1jj2,1m1k,1voy,2qp1,3i8i,1vqk,2wro,2j01,1yj9,1vor,2b66,3cd6,2wdl,3kir,2gya,2z4n,1vq9,3bbx,3oat,3df4,2z4l,2j03,2hgq,2i2t,2wwq,3knm,2hgj,2wdn,1vqm,1qvg,4csu,4ejc,3ccq,1vsp,3e1b,3zvp,3uz8,3cf5,3cc4,3f1f,3tve,1yit,4kbw,2xux,4kd9,4dhc,2xtg,3j0t,1vqn,3j11,1yjw,4uji,3e1d,3tvh,1vq8,2b9p,4a1a,3uzf,3f1h,4bye,3j14,4nvx,1yi2,3fik,4a17,4a1e,3j5l,3cma,2qex,3uos,3sgf,2otj,3j0y,4b8i,4kcz,3kni,1vq4,3bbo" "PF00861.17" "408" "2.20" "1vq8.N_9-129.1vq8.pdb1.pdb"
"1rxw" "XPG_I" "dna" "XPG I-region" "1rxw,3qe9,3q8l,4q10,4q0z" "PF00867.13" "5" "2.00" "1rxw.A_139-235.1rxw.pdb1.pdb"
"3igk" "P53" "dna" "P53 DNA-binding domain" "3vd1,3us2,4ibv,2ady,3us1,3vd2,3q06,3kmd,3qyn,3ts8,3us0,3vd0,4ibw,4ibu,4hje,4guo,4guq,3q05,2ata,3exj,1tup,3exl,4mzr,4g82,4g83,3igl,2ac0,3d0a,2ahi,3qym,1tsr,3kz8,3igk,2geq" "PF00870.13" "34" "1.70" "3igk.C_95-289.3igk.pdb1.pdb"
"1tez" "DNA_photolyase" "dna" "DNA photolyase" "3cvx,2vtb,3cvw,3cvv,3cvy,2xrz,1tez,2wq6,2wq7,2wb2,3cvu" "PF00875.13" "11" "1.80" "1tez.B_5-170.1tez.pdb2.pdb"
"4rb7" "Ribosomal_S16" "rna" "Ribosomal protein S16" "3d5c,2wdh,1vs7,2uub,3i8h,3oi2,2vqf,3df3,1vov,2qou,2qal,2wdg,2gyb,3ofp,2zm6,1ibl,2xqd,2i2p,2qbd,1vs5,3mr8,3znd,3uxt,2e5l,2j02,3df1,2v48,3i1m,2qp0,3izv,4g5t,4duy,3ora,3i1o,1xmo,3oi0,3ohy,2b9m,2uxd,2wh1,1pns,3uz6,3ofo,1vos,2vhp,3oaq,4w2c,3ogy,4gkk,3ohd,3i8g,2qoy,4g5m,3v24,1voq,2x9t,1xnr,2wrq,2wh3,2wri,3j13,2j00,2y14,3ohc,1vox,1n33,3ofa,2z4m,3kiq,2hgr,1hnz,3ms0,3knn,1ibm,2v46,1i94,3j5j,3oto,1xnq,1yl4,2ykr,3i9d,2ow8,2hhh,1n34,2vqe,2uu9,3huw,2wwl,1hr0,3pyn,3pys,2wdk,2f4v,4dv4,2hgi,3j0u,2wdm,2y12,2y10,3knl,2y0y,3j59,4lf4,3oge,3kiu,2y0u,1fjg,3oi4,2qbj,2vho,3pyu,2uuc,2hgp,2qbh,3i1z,2y0w,2y16,2aw7,1pnx,2i2u,4dv7,1voz,2y18,1hnw,2qb9,2x9r,1ibk,3ofb,2qbb,2qan,1n32,2qow,3oar,3d5a,1j5e,2gy9,2b64,4dv3,3i9b,3kix,1n36,4gd1,3f1g,2uua,2wrn,3uoq,4dr2,4dr5,2z4k,3ofy,2b9o,2wrk,3i21,3ofx,3or9,3pyq,4tol,4wao,1vvv,4pe9,1vxm,4tow,4nvy,4qcu,4tp8,4ox9,4qcw,4ji3,1vvx,4tp6,4rbf,1vxp,4qjt,4rbb,1vxi,4rbj,4tpa,4tp4,4wus,4rbh,4tpe,1vvp,1vvz,4kwz,1vxk,4waq,4qcm,1vy0,4ton,4aqy,4rbd,4qcs,1vx8,4tp0,4w2a,4wt8,4qs2,5aj3,4qd0,1vvl,1vvn,1vvr,1vvt,4yhh,3fic,3e1a,3uzg,3v2e,3kis,3tvg,4dhb,3uxs,3j0z,3j53,3j5x,3f1e,4k0l,4kj6,3fih,3bbn,4kfk,1xmq,3uz7,2uxc,3sfs,2qnh,3tvf,2xsy,3uz3,3knh,3j0v,3knj,4dh9,4dv2,3zvo,3uzl,3e1c,3uyd,2uxb,3uzi,3kc4,4kdg,3j5t,4kd0,4lf7,4ji4,4kiy,4kda,4byb,4b3m,3j4v,4kbt,4rb5,4kj0,4byd,4tou,1vxs,4lfa,4qco,3v6v,3j5h,3j4y,4kcy,4ji0,4kvb,4khp,4nvu,4ji5,4kfh,4ji1,4nxm,3j5b,4lf5,4a2i,4nw0,3j6v,4lf9,4adv,4l6m,4kjc,4qcq,4tpc,4b3s,4ji8,4lf8,4btc,1hnx,4kdj,4kbv,4jya,4ji7,4jv5,4nxn,3j5f,3v6u,3j4z,3j5n,4lfc,4lfb,4b3r,4kj8,1vy2,4kj4,4kj2,4tp2,4qs0,4ji2,3j4w,3j5d,3j55,4b3t,4ji6,3j00,4qcy,4cr1,4juw,4gkj,4rb9,4kx1,4l6k,4pea,2xfz,2xuy,3zn7,4g5k,3t1h,3v28,4b8h,2xg1,4dr7,4kja,3v26,4k0p,3v22,4duz,3v2c,4dr6,4kd8,4gaq,3j0x,4dr1,3j18,4dr3,3huy,3izw,4rb7,4b8f,3uyf,4ej9,3uzm,3j36,4k0k,3j10,4dv0,3t1y,3uz4,4gd2,4dr4,4eja,4dv1,3i1s,4dv5,3j57,4abr,4gas,4nvw,3i1q,4lf6,4g5v,4dv6,2avy" "PF00886.14" "372" "2.40" "4rb7.P_8-67.4rb7.pdb1.pdb"
"4ujp" "Ribosomal_S4e" "rna" "Ribosomal family S4e" "4bpp,2xzn,4ukm,4bpe,4uer,2xzm,3jam,1vxz,4ujr,3j81,1vx2,4kzy,4cxc,4w28,4kzx,4ujk,4ukz,4uq4,4w23,4ulr,4ukh,4kzz,4ul6,1vx5,1vw9,4uk1,4ujm,4uk4,4ukk,4d5l,4uk9,4ulj,4d61,4ukr,4ukw,4ukb,4ul1,5a2q,1vwv,4uku,4ujp,4ulg,4ukf,4ukp,4ujw,4ul4,4ujf,4uju,3j7a,4uk6,4ulm,4ulp,1vxw,4ujz,4ulb,4ul9,4ujh,3j80,4uq5,4bpn,3j43,3j20,4bpo,4ule" "PF00900.15" "64" "2.80" "4ujp.F_94-170.4ujp.pdb1.pdb"
"1h6f" "T-box" "dna" "T-box" "1h6f,1xbr,2x6v,4a04" "PF00907.17" "4" "1.70" "1h6f.B_104-285.1h6f.pdb1.pdb"
"3v9w" "RNase_T" "dna" "Exonuclease" "3nh1,3nh2,3u6f,3u3y,3ngz,3nh0,3v9z,3va3,4hxh,2oa8,1zbh,4jrq,3v9u,4kb0,4js5,4hcc,3v9w,4jrp,3v9x,4l8r,4kaz,4fzx,4fzy,4js4,4qoz,4kb1,4hcb,3v9s,4fzz" "PF00929.19" "29" "1.70" "3v9w.D_20-194.3v9w.pdb2.pdb"
"1vq8" "Ribosomal_L44" "hybrid" "Ribosomal protein L44" "3cce,3cc7,3cc2,4hub,3ccq,4a1d,3cma,4a18,3j0o,3j0l,1vqn,3ccm,1yi2,4a1b,3cpw,1vqp,1k9m,3cxc,1vqo,1k8a,1vq4,3ow2,3i56,4a19,3cme,1k73,1vq7,1jj2,1kc8,1vql,1s1i,3o58,1kqs,1vq6,3cd6,1qvf,1q82,1qvg,1s72,1m1k,2qex,3cc4,1vq8,1vqm,1vq9,1vq5,1q7y,1nji,2otj,3o5h,1q86,3j44,1vqk,1yij,2qa4,1q81,1m90,2otl,4uk6,3ccr,3g71,3ccv,3ccs,3ccl,3g6e,3g4s,3ccu,3ccj,1w2b,1yit,3i55,1yhq,1n8r,1yj9,1yjn,1yjw,1kd1" "PF00935.14" "77" "2.20" "1vq8.3_16-92.1vq8.pdb1.pdb"
"1msw" "RNA_pol" "hybrid" "DNA-dependent RNA polymerase" "1h38,1s0v,3e3j,4boc,2pi4,1s77,1cez,1qln,1s76,1msw,2pi5,3e2e" "PF00940.14" "12" "2.10" "1msw.D_449-883.1msw.pdb1.pdb"
"2gic" "Rhabdo_ncap" "rna" "Rhabdovirus nucleocapsid protein" "3pu0,3pu4,3pu1,2gic,2gtt,2wyy" "PF00945.13" "6" "2.92" "2gic.H_10-405.2gic.pdb1.pdb"
"4jng" "Bunya_nucleocap" "rna" "Bunyavirus nucleocapsid (N) protein" "4ijs,4jng,4j1g,4j1j,3zla,4bhh" "PF00952.12" "6" "2.12" "4jng.B_14-228.4jng.pdb1.pdb"
"1t9i" "LAGLIDADG_1" "dna" "LAGLIDADG endonuclease" "4efj,3mx9,3eh8,1u0c,3uvf,4aag,4aab,2vbl,3mis,1mow,3mip,4aqu,1n3f,1t9j,1n3e,2i3p,3mxb,2qoj,3mxa,1t9i,2ex5,5a74,5a72,1m5x,2i3q,1p8k,1bp7,1g9z,3r7p,1g9y,2fld,4z1x,4lox,5a77,5a78,3fd2,4lq0,3e54,3ko2,4aqx,2vbj,4aad,2vbn,4aae,4aaf,2xe0,2vbo,3qqy,1u0d" "PF00961.14" "49" "1.60" "1t9i.A_13-112.1t9i.pdb1.pdb"
"4xjn" "Paramyxo_ncap" "rna" "Paramyxovirus nucleocapsid protein" "4uft,4xjn" "PF00973.14" "2" "3.11" "4xjn.F_12-400.4xjn.pdb1.pdb"
"1ddl" "Tymo_coat" "rna" "Tymovirus coat protein" "2fz2,2xpj,1ddl" "PF00983.13" "3" "2.70" "1ddl.B_7-178.1ddl.pdb1.pdb"
"2xcs" "DNA_gyraseB_C" "dna" "DNA gyrase B subunit, carboxyl terminus" "5bs3,2xcs,4bul,4plb,4kpf,4kpe,2xcr,3k9f,2xct,2xkk,3raf,3rae,3rad,3ksb,3ksa,3ltn,4koe,4juo,4i3h" "PF00986.16" "19" "2.10" "2xcs.B_544-634.2xcs.pdb1.pdb"
"4zpk" "PAS" "dna" "PAS fold" "4zpk,4zpr" "PF00989.19" "2" "3.60" "4zpk.B_85-201.4zpk.pdb1.pdb"
"4wtl" "RdRP_3" "rna" "Viral RNA dependent RNA polymerase" "1nb7,4wtk,4wtc,4wti,4wtm,4wtd,4wtl,4wtg,4wtf,4wtj,4wte,4wta,4e78,4e7a" "PF00998.18" "14" "2.00" "4wtl.A_3-514.4wtl.pdb1.pdb"
"4ujp" "Ribosomal_S3Ae" "rna" "Ribosomal S3Ae family" "4bpp,3jam,2xzn,2xzm,4kzy,1vx5,4w23,4w28,4cxc,1vxz,4ukz,1vx2,4uq4,4ujk,4bpo,4kzx,4ukh,4ujr,4ulr,4kzz,4ul6,1vw9,3j20,4ule,4bpe,4bpn,3j43,4uku,4ujh,4ukp,4ul9,4uk6,4ulp,1vwv,4uq5,4uju,3j7a,4ukf,4ulg,4ujw,4ulb,4ulm,4ujp,4ujf,4ul4,4ul1,4uk9,3j80,4ulj,4uk4,4ukw,4ujm,1vxw,4uk1,4d5l,4ukr,4ukk,4d61,5a2q,4ukb,4ujz,3j81,4uer,4ukm" "PF01015.13" "64" "2.80" "4ujp.C_20-222.4ujp.pdb1.pdb"
"4rb8" "Ribosomal_L27" "rna" "Ribosomal L27 protein" "3pyr,1yl3,3uz1,3pyo,2qbk,3j0w,3ofz,3ms1,1vou,3mrz,2qbi,2vhn,3ofc,4qd1,2qbg,2gyc,3d5d,3pip,1vow,3pyv,2j28,3pyt,3j7y,3uzh,2qbe,3knk,3r8t,4qcn,1vp0,3i9c,2zjr,3hux,3uye,3uz2,3kit,3ofd,3v29,3i22,3izu,2i2v,3i20,3og0,3uzn,2j03,3zn9,3v23,3r8s,3oas,4kbw,3ohz,4b8i,3oh7,3uzk,3oh5,2j01,3oi3,3oi1,4io9,4kj3,4abs,4g5l,4b8g,3kno,3j5c,3j37,2y11,3fin,3huz,3oi5,3uyg,3i1r,4gar,3ohk,4ejc,4g5n,3zvp,3ohj,2wrl,2wdn,2qp1,2qbc,2xux,3v25,2wdj,3zne,2y0v,2y0x,2wdi,2qov,2awb,2qba,2xtg,2xqe,2wh2,2qox,2wro,2wrj,2wrr,2qoz,2wwq,2x9s,4gau,2wh4,2x9u,2xg0,3v6x,3i1t,2y13,2wdl,4g5u,4ejb,2v47,2qam,2v49,2qao,2y19,4ioa,2y0z,3izt,2y17,2y15,3sgf,3uz8,3kni,3uzf,3e1b,3v2f,1vsp,3j0y,4ioc,4bye,3tvh,3bbo,3j7z,3j14,2b9p,3e1d,3j19,3j0t,3f1f,4nvx,3f1h,3cf5,4dhc,4kd9,3j11,3fik,3v27,3tve,3v2d,3uos,4kj7,3j56,4kj9,4too,4kfi,3j5g,3j5u,4k0q,3j5k,3j5o,4kjb,1vvm,3j51,3j5i,4tox,4kdb,3j5w,4rba,4kdh,4jux,3j50,4nvz,3j5e,4byc,3j52,4ce4,4nvv,4qcp,3j58,4kiz,4rbc,4kcz,1vy1,3j5a,1vvs,4qcx,1vxl,4l6l,4kd2,2zjq,1vy3,3j4x,4nw1,4kdk,2xg2,4kix,4btd,4kj5,4qjs,4kbu,4k0m,4kj1,3v6w,4kfl,3j54,3i8i,3df2,1vs6,2gya,3i8f,3i1p,2aw4,3ofq,2hgu,2hgj,3kiw,3bbx,2z4l,3kir,3orb,4dha,2b9n,1vt2,3kiy,4g5w,1voy,3i1n,1y69,1vs8,3uxq,3oat,1vor,3df4,2vhm,3uxr,2z4n,3knm,4csu,2i2t,3ofr,1vsa,2hgq,3d5b,3j12,2b66,3uz9,3kcr,3j5l,2zjp,3i9e,4tp5,1vxt,4tp7,4u67,4tpb,4rbe,4tp9,1vxq,1vvy,4peb,4tov,4qcr,4kx0,4qcv,4wwe,1vvw,4rbi,4tp1,4v19,1vvo,4qcz,4qs1,4tp3,4wap,4rb6,5aka,1vxj,4war,4qs3,4tom,4rbk,3dll,4rbg,3pio,4kx2,4rb8,1vvu,1vvq,1vxn,3j8g,4tpd,1vw0,4tpf,4l6j,4uy8,4wwt,1vx9,4w2d,4pec,4w2b,3j01,4qct" "PF01016.14" "303" "2.40" "4rb8.0_2-82.4rb8.pdb1.pdb"
"4csu" "GTP1_OBG" "rna" "GTP1/OBG" "4csu" "PF01018.17" "1" "5.50" "4csu.9_4-158.4csu.pdb1.pdb"
"4a1b" "Ribosomal_L40e" "rna" "Ribosomal L40e family" "4a19,4a18,4a1d,4a1b" "PF01020.12" "4" "3.52" "4a1b.K_78-128.4a1b.pdb1.pdb"
"4on0" "HTH_5" "dna" "Bacterial regulatory protein, arsR family" "4on0,4omy" "PF01022.15" "2" "3.00" "4on0.B_28-74.4on0.pdb1.pdb"
"4pe8" "TatD_DNase" "dna" "TatD related DNase" "4pe8" "PF01026.16" "1" "2.89" "4pe8.A_2-257.4pe8.pdb1.pdb"
"2h7g" "Topoisom_I" "dna" "Eukaryotic DNA topoisomerase I, catalytic core" "1ej9,1k4s,1a36,1lpq,1a31,2b9s,1a35,1k4t,3igc,1nh3,1rr8,1r49,1sc7,1tl8,1seu,2h7f,1rrj,1t8i,2h7g" "PF01028.15" "19" "1.90" "2h7g.X_62-296.2h7g.pdb1.pdb"
"3r2c" "NusB" "rna" "NusB family" "3r2d,3r2c,4eya" "PF01029.13" "3" "1.90" "3r2c.B_5-132.3r2c.pdb2.pdb"
"3gx4" "DNA_binding_1" "dna" "6-O-methylguanine DNA methyltransferase, DNA binding domain" "4enk,4hdu,4enn,4hdv,3gx4,1yfh,1t39,4enj,1t38,4enm,3gyh" "PF01035.15" "11" "2.70" "3gx4.X_4-90.3gx4.pdb1.pdb"
"4aik" "MarR" "dna" "MarR family" "4aik,4aij,1z9c,3q5f" "PF01047.17" "4" "1.85" "4aik.A_29-88.4aik.pdb1.pdb"
"1rep" "Rep_3" "dna" "Initiator Replication protein" "1rep,2nra,2z9o" "PF01051.16" "3" "2.60" "1rep.C_15-242.1rep.pdb1.pdb"
"2q2t" "DNA_ligase_A_M" "dna" "ATP dependent DNA ligase domain" "3l2p,2q2u,2q2t,1x9n" "PF01068.16" "4" "2.30" "2q2t.A_6-188.2q2t.pdb1.pdb"
"4lvi" "Mob_Pre" "dna" "Plasmid recombination enzyme" "4lvj,4lvl,4lvm,4lvi,4lvk" "PF01076.14" "5" "1.90" "4lvi.A_2-194.4lvi.pdb1.pdb"
"4rb7" "Ribosomal_S18" "rna" "Ribosomal protein S18" "3j5x,4qco,4ji4,2xfz,4ji1,4lfb,4adv,4jya,4l6m,4nxn,4tp2,3v6v,4lfa,4cr1,4kj8,4a2i,4kvb,4kcy,4ji0,4juw,1vxs,3j4z,4nvu,4kda,4kdg,4tpc,4byb,4lf8,4ji5,4kj0,3j55,4kj4,4pea,4kdj,3j59,4b3m,4w2c,3j5n,3v6u,1hnx,3j6v,3j7y,4kiy,4lf5,4qcy,4khp,4kfh,4byd,4qcq,3j4v,4lfc,4kx1,4kj2,4rb9,4gkj,4kbv,4ji2,4qs0,4b3t,4b3r,4ji8,1vy2,3j4y,4kjc,3j5f,4btc,4lf9,3j5h,4l6k,3j5t,4lf7,3j5d,3j00,4ji6,4lf6,4jv5,4kbt,4b3s,3j5b,4nw0,4tou,4kd0,4rb5,4nxm,3j4w,3t1h,3v22,4abr,4gaq,3izw,4kfk,4gd2,2xuy,4ej9,4ji7,4dr7,4k0p,4dr4,4rb7,3j10,4dr3,3i1q,3uz4,4nvw,3uzm,3j36,4kja,3v26,3j57,3huy,2xg1,3j0x,4dv6,3t1y,4kd8,2avy,4dr6,3uyf,4duz,4eja,3v2c,3i1s,4g5k,4g5v,3j18,4dr1,4dv1,4gas,4dv0,4dv5,4b8h,3v28,2e5l,3j5j,3i9d,3kiq,3huw,2qp0,3oto,4duy,2vqe,3v24,1n32,3j13,2wh3,1pns,1vox,3ofa,2qbd,2wdh,1vs5,3uxt,2i2p,1xnr,3i8g,1vs7,3ofo,2uub,3oi0,3df3,2v46,2qal,3ohc,2j00,2y14,4lf4,4k0k,3df1,1n33,2z4m,3d5c,3znd,3mr8,3i1m,3i1o,4g5t,2xqd,3izv,1vov,2x9t,3ofp,3oi2,2wdg,3uz6,2zm6,3i8h,2vqf,3ora,2qou,2wri,2hgr,1ibl,2v48,4g5m,1xnq,3ohd,1xmo,4gkk,1vos,2hhh,3ms0,2wwl,2wh1,3oaq,2vhp,1ibm,2ow8,3ogy,2j02,1yl4,3knn,2qoy,1hnz,1n34,1voq,2b9m,2uu9,2wrq,2ykr,3ohy,2uxd,1i94,3or9,3uz3,1pnx,1n36,3i9b,2b9o,2x9r,3oi4,2uua,3fic,4dr2,1voz,3i21,4dr5,3ofb,3oar,2hgi,2qan,3pyn,2y18,1ibk,4dv7,2b64,2f4v,2aw7,2qow,2y0u,3pys,4dv4,3kiu,2wrn,2qb9,2y10,3i1z,3uoq,1j5e,2y0y,3d5a,3oge,2hgp,3j0u,3ofy,1fjg,3zn7,1hnw,2y16,3ofx,2qbb,4gd1,1hr0,2vho,2wrk,1g1x,3pyq,2qbj,2wdm,2y12,3f1g,2qbh,2uuc,2i2u,3pyu,2wdk,2z4k,2y0w,2qbf,3knl,4dv3,3kix,4w2a,4tp8,4rbj,1vxk,4wao,4wt8,4ton,1vvn,4pe9,4rbd,4ji3,4qd0,1vvr,4waq,5aj3,1vx8,4qcu,1vvx,1vvv,1vxp,1vvl,1vvz,4qcw,4tp4,4rbf,4tp0,1vxi,4kwz,4ox9,1vvt,4tpa,4tp6,4yhh,4qcm,4tow,4qs2,4nvy,4tpe,4qjt,4aqy,4qcs,4tol,1vvp,4rbb,4rbh,1vy0,4wus,3bbn,3zvo,4kj6,2xsy,4dv2,3e1a,3j53,4dh9,3fih,4k0l,3tvg,2uxc,3knj,2qnh,3sfs,3uxs,3e1c,3kc4,3uzg,4b8f,3uz7,3uyd,1xmq,3j0v,3kis,3f1e,3j0z,3tvf,3knh,2uxb,3uzi,3v2e,4dhb" "PF01084.15" "371" "2.40" "4rb7.R_28-79.4rb7.pdb1.pdb"
"4ujp" "Ribosomal_S19e" "rna" "Ribosomal protein S19e" "4bpp,3jyv,4w23,3jam,2xzm,1vx2,4w28,4ujk,1vxz,4ukh,1vx5,3j81,1vw9,4uq4,4ul6,4ulr,4kzy,4cxc,4ujr,4ukz,3j43,4ule,4bpn,4bpo,4kzz,4kzx,4ulb,4ujp,4ukb,4ukf,4ulp,4ujz,4uk9,4uju,4ujm,1vxw,4ul4,4ujw,1vwv,4d5l,5a2q,4uk1,4uku,4ujh,4ujf,4d61,4uk6,4ulj,4uk4,4ul9,4ulg,3j7a,3j80,4ukp,4ukk,4ul1,4ulm,4ukr,4ukw,4uq5,4uer,3o2z,4ukm,3o30,4bpe,2xzn,3j20" "PF01090.14" "67" "2.80" "4ujp.U_4-144.4ujp.pdb1.pdb"
"4ujp" "Ribosomal_S6e" "rna" "Ribosomal protein S6e" "2xzn,4bpe,4ukm,4kzz,4kzy,4ukz,4cxc,4ukh,4w28,4ujk,1vw9,4uq4,1vxz,4ujr,3j81,4ul6,1vx2,4ulr,3j43,4w23,1vx5,4kzx,4bpo,4bpp,3jam,2xzm,4uer,3j16,4bpn,4ule,3j20,4uk6,4ul9,4ulp,4ukp,4ujh,4ujf,4ujz,4ukw,4d5l,4uku,4uk4,4ul1,5a2q,4ujm,4ulb,4ujp,4uq5,4ukf,4ukk,4ulj,4uk9,4ukb,3j80,4ulm,4ul4,4d61,4uju,4uk1,1vxw,1vwv,4ukr,3j7a,4ujw,4ulg" "PF01092.14" "65" "2.80" "4ujp.H_1-127.4ujp.pdb1.pdb"
"3po3" "TFIIS_C" "hybrid" "Transcription factor S-II (TFIIS)" "3po3" "PF01096.13" "1" "3.30" "3po3.S_269-307.3po3.pdb1.pdb"
"1mw8" "Topoisom_bac" "dna" "DNA topoisomerase" "2o5e,2o5c,2o59,3px7,1mw8,2o19,2o54,1i7d" "PF01131.15" "8" "1.90" "1mw8.X_156-565.1mw8.pdb1.pdb"
"3huy" "EFP" "rna" "Elongation factor P (EF-P) OB domain" "3huw,3huy" "PF01132.15" "2" "3.10" "3huy.V_67-120.3huy.pdb1.pdb"
"4o8j" "RTC" "rna" "RNA 3'-terminal phosphate cyclase" "4o8j" "PF01137.16" "1" "2.04" "4o8j.B_4-327.4o8j.pdb2.pdb"
"2po1" "RNase_PH" "rna" "3' exoribonuclease family, domain 1" "2po1,3m7n,2jea,3m85,4ifd" "PF01138.16" "5" "1.94" "2po1.H_25-154.2po1.pdb1.pdb"
"1k3x" "Fapy_DNA_glyco" "dna" "Formamidopyrimidine-DNA glycosylase N-terminal domain" "2oq4,3gq4,1tdz,1r2y,1r2z,2f5p,1k82,3gpu,3sar,3u6p,3sbj,2f5s,2f5q,1k3w,1l1t,1l1z,1l2b,3sau,1l2c,3jr4,3sav,1l2d,2xzf,3saw,3vk8,3u6l,3twm,4g4q,4g4o,3vk7,4g4r,4pcz,2f5n,4pd2,4pdg,4pdi,4g4n,3u6s,4cis,3u6q,3u6e,3u6m,4nrw,3u6d,3u6c,3u6o,3gp1,1kfv,3a46,1xc8,2opf,3gpx,3sat,3gq3,2f5o,3jr5,1k3x,3sas,3c58,2ea0,3go8,1pji,1pm5,2xzu,1nnj,3gpy,1pjj,3gq5,3gpp" "PF01149.19" "69" "1.25" "1k3x.A_1-110.1k3x.pdb1.pdb"
"1vqo" "Ribosomal_L21e" "rna" "Ribosomal protein L21e" "1kd1,1vql,1kqs,1vq6,1w2b,2otl,1yij,2qa4,1yjn,1m90,1q81,3cd6,1yhq,1yj9,3o5h,1vqm,1vq5,1jj2,1vqk,1q82,1vq9,1m1k,1qvg,3o58,3cc4,3ow2,1yjw,4a1e,1vq4,1yi2,4a1a,2otj,1vqn,1yit,3ccm,4a17,3cma,2qex,1k8a,4a1c,3cxc,1nji,3i55,1q7y,1vq8,1vqp,1k9m,1s72,1vqo,3cme,3i56,1vq7,1kc8,1s1i,1k73,1qvf,1q86,3cce,3g4s,3ccv,3ccl,3cpw,3ccr,3g71,3ccq,3g6e,3ccs,3ccu,3ccj,3cc7,4hub,3j44,3cc2" "PF01157.13" "73" "2.20" "1vqo.Q_1-95.1vqo.pdb1.pdb"
"4a1b" "Ribosomal_L36e" "rna" "Ribosomal protein L36e" "4a19,4a1d,4a18,4a1b" "PF01158.13" "4" "3.52" "4a1b.Q_2-103.4a1b.pdb1.pdb"
"4ujq" "Ribosomal_L6e" "rna" "Ribosomal protein L6e " "4a1b,4a18,4a1d,3o5h,3o58,4uji,4ulh,4uk5,4ukq,4uk0,4ukc,4ula,4ukv,4ujg,4ukn,4ulf,4ulk,4uki,4ulc,4ukg,4ujv,4ukx,4uls,4ulq,4ujl,4ujs,4ul7,4ul5,4ukl,4uk2,4uks,4ul0,4ujn,4uka,4uln,4ujq,4ujx,4ul2,4a19" "PF01159.14" "39" "2.80" "4ujq.H_107-176.4ujq.pdb1.pdb"
"4tpe" "Ribosomal_S21" "rna" "Ribosomal protein S21" "4adv,3j5n,4tpc,4kj8,3j4z,4a2i,3j00,3j5x,4kiy,4kj4,3j5t,3j5d,4tp2,4pea,3j6v,3j4v,3j4y,4kj2,4kjc,3j5b,4kj0,3j59,4tou,3j5f,3j4w,3uoq,3i1z,2qbh,2qbf,4gd1,3or9,3ofy,2aw7,2vho,2qow,2qan,3oar,2z4k,2qb9,3ofb,2qbj,2i2u,3i21,2qbb,3ofx,2avy,3e1c,3e1a,3sfs,3j53,3kc4,3j0z,3bbn,3j0v,3izw,3fih,4kj6,4gas,3oaq,3j5h,3j0x,3i1s,4kja,3j36,3j18,3j57,4gaq,3i1q,4gd2,3j10,2i2p,2z4m,3j13,2wwl,1vs7,2qal,1vs5,2qbd,2vhp,3ofp,2qp0,3i1o,3df3,3i1m,3j5j,3ofo,3df1,3ofa,2ykr,3izv,2qoy,3j0u,3ora,2qou,4pe9,4tpa,4tp6,4tow,4tp0,4tp8,4waq,4tpe,4tp4,4ton,4tol,5aj3,4wao" "PF01165.15" "107" "2.80" "4tpe.U_4-54.4tpe.pdb1.pdb"
"3a2k" "ATP_bind_3" "rna" "PP-loop family" "3a2k" "PF01171.15" "1" "3.65" "3a2k.A_20-205.3a2k.pdb1.pdb"
"1hr0" "eIF-1a" "rna" "Translation initiation factor 1A / IF-1" "4bpn,4kzz,1hr0,3j81,4bpo,4kzy,4uer,3jam,3j80,4bpe" "PF01176.14" "10" "3.20" "1hr0.W_5-70.1hr0.pdb1.pdb"
"3vjr" "Pept_tRNA_hydro" "rna" "Peptidyl-tRNA hydrolase" "3vjr" "PF01195.14" "1" "2.40" "3vjr.C_8-192.3vjr.pdb1.pdb"
"4rb8" "Ribosomal_L17" "rna" "Ribosomal protein L17" "3sgf,4kd9,3tve,3uos,1vsp,4kbw,2xtg,3d5b,4b8i,3e1d,3fik,3bbo,3f1h,3j0y,3j5l,3j0t,4nvx,3f1f,4bye,4qcn,3uz8,4kcz,3zvp,3j14,3uzf,4dhc,3j11,3kni,3e1b,2b9p,2xux,4csu,3cf5,3tvh,4qs1,4peb,4v19,4tom,4rb6,4wwt,4tpd,4tp9,4kx2,1vxt,4rbg,1vxn,3pio,4rbk,4rb8,4kx0,4tpf,3j8g,4pec,1vw0,4uy8,1vxj,5aka,4w2b,1vvq,4qcr,4qs3,1vxq,4qct,1vvw,4tov,4u67,3j01,4tp7,4qcz,1vvy,4l6j,1vx9,4wap,1vvu,4w2d,4war,4rbi,3dll,4tpb,4rbe,4wwe,4tp1,4tp3,4tp5,4qcv,1vvo,2z4l,2wwq,2qp1,1voy,2wdn,3ohj,3i1n,3v6x,1vt2,1vs6,3fin,2qoz,4dha,3bbx,2hgu,3ofr,3i8i,3oat,3oi5,2wdi,3kcr,2wh2,2qbc,3i9e,2wdl,2z4n,2qov,2vhm,2wdj,3i8f,2wh4,2j03,2hgq,2v47,2i2t,2wrr,2zjp,3oh5,3kiy,2gya,3orb,2xqe,3ofq,3i1p,3knm,2b9n,2aw4,1vsa,2b66,3df2,3uxq,1vor,2j01,3kiw,2hgj,2wro,3df4,1vs8,3j5c,2x9s,3uz2,3uzh,2y11,3d5d,3ofz,3oi3,3hux,2y0x,3i22,3mrz,3j54,1vp0,2qam,1vou,3j0w,3oi1,2y0v,2qbi,4abs,3ms1,3ohz,2gyc,2qbg,3uye,3j12,3pip,3og0,3pyv,4qd1,1vow,2wrl,2v49,2y0z,3pyo,3pyt,2y17,4g5w,4rbc,3kit,3uz1,2qox,3izu,2qao,2wrj,2x9u,2zjr,3ofd,2qbe,3uz9,2j28,3knk,3oh7,3v29,3i9c,3pyr,3ohk,3j4x,2y13,3kir,2i2v,2vhn,2y15,1yl3,3ofc,2y19,3uxr,2qba,2qbk,3i20,2awb,4gau,3v25,4g5u,4ioa,3izt,4io9,3v27,3i1r,3huz,3zne,3j7z,4ejb,3i1t,4g5n,3j19,3uzk,3v2f,4g5l,4kj3,4gar,4ejc,3zn9,3v23,4ioc,3uyg,4b8g,3j37,3kno,3uzn,3r8s,3v2d,3r8t,3oas,4ce4,4kj7,4kdh,3j5e,4nvv,4btd,4nvz,3j52,3j7y,4tox,4too,2zjq,4nw1,4kfl,4k0q,4kbu,4qcx,4kiz,3j51,4kix,2xg0,4kj9,3j50,3j5o,3j5k,4kjb,1vvs,3j58,1vy3,4qcp,4k0m,3j56,3j5a,4kj1,1vxl,4kfi,4kj5,3j5i,4kdb,4l6l,3j3w,4qjs,4jux,3j3v,4kd2,3j5g,3j5u,4byc,3j5w,2xg2,3v6w,4kdk,4rba,1vvm,1vy1" "PF01196.14" "304" "2.40" "4rb8.R_20-117.4rb8.pdb1.pdb"
"4rb6" "Ribosomal_L31" "rna" "Ribosomal protein L31" "4kcz,1vvm,4btd,4kbu,1vvs,4kdk,1vy3,4nw1,4byc,4kdh,4qcp,4rbc,4qjs,4rba,4kdb,4qcx,1vy1,1vxl,4nvv,4nvz,1vvw,4w2b,1vw0,1vvy,1vxj,4qcv,4qs3,5aka,4qct,4kx0,1vxn,4rbg,4rbk,1vvo,4kx2,4rb8,1vxt,1vvu,4rbe,4qcr,1vx9,4rbi,4qs1,1vxq,4w2d,4qcz,4rb6,1vvq,3uz8,2j01,3j14,4ejc,3e1d,2v49,3j11,2wrj,4dhc,3v2f,4bye,3j0t,3j0y,4kd2,3uzf,2wrl,2v47,3e1b,3v27,2b9p,2xux,3tvh,4nvx,2xtg,2vhm,4kbw,3oh7,3zne,3v2d,3oi5,3oh5,4kd9,2j28,2awb,2vhn,3v23,3uyg,4g5u,3oi3,4b8g,4g5n,3ohk,3izt,3uzn,3uzk,3ohj,4b8i,3ohz,4g5l,3oi1,3v25,3kir,3fin,1voy,2hgj,3uxr,1vor,2hgu,3j12,3kiy,1vs6,1vs8,3bbx,2b66,3tve,2aw4,4dha,3kiw,3uz9,3uxq,2hgq,4g5w,2b9n,3i9e,3i8f,3i8i,1vow,4qcn,1vp0,3uz1,3uye,3uzh,3izu,3v29,1yl3,3i9c,4qd1,3j0w,3uz2,1vou" "PF01197.13" "138" "2.40" "4rb6.4_1-66.4rb6.pdb1.pdb"
"1vqo" "Ribosomal_L31e" "rna" "Ribosomal protein L31e" "1vq8,1k8a,3cme,1qvf,1s1i,1q86,3i56,1k9m,1vq7,1vqo,1kc8,3cxc,3i55,1k73,1q7y,1vqp,3g6e,3cce,3ccu,3g4s,3g71,3ccr,3ccs,3ccj,3ccv,3ccq,3cc2,3cc7,4hub,3cpw,1m90,3o58,2qa4,1jj2,1s72,1qvg,1m1k,1q82,3o5h,1w2b,1q81,1vq9,1yj9,1yjn,1vq5,1vq6,1kd1,3cc4,1nji,2go5,1yij,1vql,1vqk,3cd6,2otl,1yhq,1kqs,1vqm,1yit,1yjw,2otj,3ccm,2qex,1vq4,3cma,3ccl,1vqn,1yi2,2j37,3ow2,3j44" "PF01198.14" "71" "2.20" "1vqo.X_7-86.1vqo.pdb1.pdb"
"4a19" "Ribosomal_L34e" "rna" "Ribosomal protein L34e" "3j44,4a18,4a1d,4a1b,4a19" "PF01199.13" "5" "3.52" "4a19.L_2-96.4a19.pdb1.pdb"
"4ujp" "Ribosomal_S28e" "rna" "Ribosomal protein S28e" "3jam,1vx2,4cxc,3j81,4uq4,4ujk,4kzy,1vx5,4w23,1vw9,4bpo,4w28,4ukz,1vxz,3o2z,3o30,2xzm,4kzz,4bpn,4bpe,3j20,4ule,2xzn,3j43,4kzx,4bpp,4uer,4d61,4ujf,4d5l,4ulp,4ujz,1vxw,4ukp,4ulj,4uku,3j7a,5a2q,3j80,4uk9,4uq5,4ukf,4ujp,4ukk,4uju,1vwv,4uk4,4ul4,4ul9" "PF01200.13" "49" "2.80" "4ujp.d_5-67.4ujp.pdb1.pdb"
"4ujr" "Ribosomal_S8e" "rna" "Ribosomal protein S8e" "4ulb,4ukb,4ukf,4uk1,4d61,4ukw,4ujm,4ujw,4ul4,4d5l,4ulp,4uk6,4ujz,1vwv,4uk4,4uju,4ul9,4ujh,4uk9,4ulj,4ujf,4ujp,5a2q,4ul1,4ukp,4uku,4ulm,4ulg,3j80,4ukr,3j7a,1vxw,4ukk,4uq5,4ukm,3jam,3j81,4w23,4ujr,1vxz,4w28,1vx2,4bpo,4kzy,4cxc,1vw9,4kzz,1vx5,4ul6,4ukh,4uq4,3j43,4ulr,4ujk,4ukz,4uer,3j20,4bpn,4bpe,2xzn,4ule,2xzm,4kzx,4bpp" "PF01201.17" "64" "2.80" "4ujr.m_2-184.4ujr.pdb2.pdb"
"3b0u" "Dus" "rna" "Dihydrouridine synthase (Dus)" "3b0v,3b0u,4yco,4ycp" "PF01207.12" "4" "1.95" "3b0u.Y_7-312.3b0u.pdb2.pdb"
"3spd" "HIT" "dna" "HIT domain" "3spl,3szq,3spd" "PF01230.18" "3" "1.91" "3spd.A_44-156.3spd.pdb1.pdb"
"4rb6" "Ribosomal_L19" "rna" "Ribosomal protein L19" "4l6l,1vxl,4k0m,4nvz,3j52,4kix,4kfl,3j4x,3j7y,4byc,4kiz,4rbc,2xg2,4qjs,3j3w,4kj5,4kj9,3j5k,3j5o,4rba,4too,4kjb,3j51,3j50,2zjq,3j56,3j5a,4kdb,1vvs,3j5u,4kdk,4tox,1vy1,3j5g,4kfi,4kd2,4nw1,4jux,4kdh,4kj7,3v6w,4qcx,3j5e,4btd,3j5w,3j58,4kj1,4nvv,2xg0,1vvm,3j3v,3j5i,4kbu,4k0q,4qcp,1vy3,4rbi,1vx9,4war,4peb,1vw0,4wwt,1vvw,4rb8,4rbe,4tp9,4wwe,4l6j,3j8g,3dll,4kx0,4u67,4qs1,4tpf,1vvq,4qs3,3j01,4tp1,4tom,1vxq,1vxj,4rbk,4tpb,1vvy,4w2b,4qcv,1vxn,4wap,4tp7,4tpd,5aka,4qcr,4rb6,1vxt,1vvu,4qct,4uy8,1vvo,4tov,4qcz,4tp5,4kx2,4pec,4w2d,3pio,4rbg,4tp3,4qcn,3knm,3fin,3i1n,2wdj,3i8f,2wdn,1voy,3oh5,2zjp,2j03,3uz9,2hgq,3df4,2wrr,1vs6,3kiw,2j01,2i2t,3kiy,2wro,2vhm,3bbx,2wh2,3uxq,2wdl,3kir,3oat,3i9e,3kcr,2hgu,2wdi,3j12,4dha,3ohj,3j5l,2v47,2hgj,3i8i,3i1p,3ofr,3ofq,2xqe,2aw4,3df2,2gya,3orb,1vsa,1vs8,1vt2,2wh4,3oi5,2wwq,3uz8,3fik,2z4n,3cf5,4dhc,3j11,3e1b,3j0y,1vsp,3tve,4b8i,3sgf,3j14,3tvh,2qba,2qbi,3uos,2qbe,3i1r,2qam,2xtg,4kd9,2qbk,3uzf,2qov,2qbc,2xux,2qoz,2qao,2qp1,4bye,4kbw,2z4l,3kni,3bbo,2qox,3f1h,4ejc,2qbg,3j0t,4kcz,3f1f,3e1d,4nvx,4gar,3kno,4csu,3j19,3v25,4kj3,4ioc,4b8g,3r8t,3j5c,3v2f,3v23,3r8s,4g5n,3j7z,3uyg,3v2d,4ejb,3v6x,3izt,3zn9,4gau,3i1t,4g5u,3zne,2awb,4io9,3oas,3huz,4g5l,4ioa,3uzk,3j37,3v27,3uzn,3j0w,2y13,2x9s,3ohk,3uye,2y0v,3ms1,3d5b,3pyr,2gyc,2y19,1vp0,3zvp,3uz1,3j54,2y15,2zjr,3izu,3ofd,3hux,3og0,3oh7,2y11,3ofc,2y0z,3pyo,3knk,2y0x,3i20,2j28,3uzh,3ofz,3pip,4qd1,4abs,3mrz,2v49,3pyv,1vow,3pyt,4g5w,2y17,3uxr,2wrl,2wrj,2x9u,3oi3,3ohz,3d5d,3v29,3i9c,3kit,3uz2,3oi1,2i2v,2vhn,3i22" "PF01245.15" "296" "2.40" "4rb6.T_4-116.4rb6.pdb1.pdb"
"1vqo" "Ribosomal_L24e" "rna" "Ribosomal protein L24e" "1vqp,1k73,1k9m,1yl3,1vq7,3i56,1s72,3cme,3i55,1k8a,1q7y,1s1i,1q86,1vq8,1qvf,1vqo,1kc8,3cxc,1qvg,1m90,1vql,3cc4,1vqk,1m1k,1yjn,1vq9,1kqs,2qa4,3o58,1vq6,1vq5,3cd6,1jj2,1nji,1vqm,3o5h,1yij,2b66,1q81,1kd1,1q82,2b9n,1w2b,1yhq,2otl,1yj9,3j44,3cc7,3ccq,3cc2,4hub,3ccs,3g6e,3cpw,3ccr,3ccu,3ccv,3ccj,3g4s,3ccl,3g71,3cce,3ow2,3ccm,3cma,2b9p,1vq4,2qex,2otj,1vqn,1yjw,1yit,1yi2" "PF01246.15" "73" "2.20" "1vqo.U_4-56.1vqo.pdb1.pdb"
"4a19" "Ribosomal_L35Ae" "rna" "Ribosomal protein L35Ae" "4a1d,4a1b,4a18,4a19" "PF01247.13" "4" "3.52" "4a19.H_14-107.4a19.pdb1.pdb"
"1sds" "Ribosomal_L7Ae" "rna" "Ribosomal protein L7Ae/L30e/S12e/Gadd45 family" "4ukf,4ujw,3ccr,3cce,3ccv,4ul1,3g71,4tzw,4ulk,4uk7,4ulc,4tzv,4uki,4ulm,3ccj,4d5l,3g6e,4uls,3g4s,4ul2,4ul5,4ulp,5a2q,4ulq,4uln,4ulb,4ukl,4ujx,4ujv,4ujf,4tzp,4d61,4uk4,4ulg,3cpw,4uk6,3ccq,4ul0,4uk1,3hjw,4ujz,4ul4,4uk9,4ujs,4ukb,4ukk,4ukw,3ccu,4uks,4ujp,4uju,4ukr,1vwv,4ul7,4uk2,4ujg,4ukx,4ukg,4ujh,4ujl,4ukp,4ujn,4ulf,4uku,4ujq,4ul9,4uq5,3ccs,4ujm,1vxw,4uka,3j80,4ukn,4ulj,4uq4,3nvi,4tzz,4ulh,4ukv,4cxc,1vx2,4ukq,4ujk,4kzz,4lck,3id5,4ula,4uk0,4bw0,1vx5,4ukh,3j44,4ukc,1vxz,4hub,3cc2,3cc7,4ujr,4ukz,4uji,4ulr,4w23,4ul6,1vw9,4c4w,4kzy,3j81,4w28,4uk5,1kc8,1vqo,4a1c,3lwq,1vq7,2xzn,4bpe,3pla,1s1i,1q7y,1t0k,3lwp,4ukm,3i56,3j43,3i55,1q86,1yij,1vqp,3cxc,3cme,1s72,1k8a,1nji,3hax,1k9m,1k73,3nmu,1qvf,3siu,4a1a,4a1d,2otj,1vq4,2qex,3v7e,3siv,1vq8,1yi2,3ccl,3cd6,4a1e,4a18,1yjw,4a17,1sds,1yit,1vqn,4bpp,4a1b,3ccm,3cma,4ule,3cc4,3ow2,4bpo,3j20,4bpn,4kzx,1n8r,1ysh,3lwv,1kd1,1kqs,1vqk,1jj2,3nvk,3o58,2hvy,2otl,3lwo,1vq9,1yhq,1vql,4a19,1e7k,1yjn,1w2b,3o5h,2ozb,1vqm,3lwr,1yj9,1q82,1vq5,1vq6,1m90,1rlg,1q81,1qvg,2qa4,3hay,2xzm,3jam,1m1k,4uer" "PF01248.21" "205" "1.80" "1sds.A_12-106.1sds.pdb1.pdb"
"4ujr" "Ribosomal_S21e" "rna" "Ribosomal protein S21e " "4bpe,1vxw,3j7a,4ujp,4ujz,4uk9,4ukf,3j80,4ulj,4uku,3j81,1vxz,1vx5,4ujr,4w28,1vx2,3jam,4w23,4bpo,4bpp,2xzm,2xzn,4bpn" "PF01249.13" "23" "2.80" "4ujr.z_1-82.4ujr.pdb2.pdb"
"4rb7" "Ribosomal_S6" "rna" "Ribosomal protein S6" "3v22,3v26,3j10,3i1s,3huy,4kfk,3j0x,4kj6,3v28,3uzm,4dv1,4gaq,3v2c,4dv0,4nvw,3uyf,4ej9,4dr5,3i1q,2avy,3izw,4b8h,2xuy,3j5j,3j18,3t1y,4abr,4kja,4k0l,4gas,3t1h,3v24,4lf4,4dr1,2v48,4gd2,3oar,3zvo,3knn,4dr3,4kd8,4dv2,4dv5,4g5k,4b8f,4dr6,4dv6,3uz4,3zn7,4dr4,4duz,4eja,4g5v,4k0p,4dr7,5aj3,4pe9,4qcs,4rbd,4tpa,4wus,1vxi,4tow,4rbh,4tp4,4tp6,4waq,4tol,1vvr,4tpe,4tp8,4qcu,4ox9,1vvv,4qjt,4rbj,4kwz,4ji3,4wt8,1vvl,4tp0,4wao,1vxp,1vvn,4rbb,4ton,1vvt,1vvz,4qd0,1vy0,4aqy,1vxk,4qs2,4rbf,1vvp,4qcm,4yhh,4qcw,1vxm,4w2a,4nvy,2gy9,3ofy,2wdk,2hgp,2vqe,4nvu,3j0u,2y0w,1g1x,2vho,2wrn,2wrk,2ykr,3pyu,1ibk,2y10,2y16,3kiu,2y0u,2aw7,2f4v,2i2u,3d5a,2wdm,2y0y,3or9,1n36,2uuc,4gd1,1hnw,2b64,1pnx,2uua,2y12,3oaq,1j5e,2x9r,3pys,2y14,4dv3,2wdg,1voz,3kix,2y18,4dv4,3oi4,3knl,3pyq,3ofb,2b9o,2hgi,1fjg,3ofx,3i9b,3i1z,3uoq,4dv7,3f1g,3pyn,3oge,3i21,2qb9,3e1a,3uz7,3j5x,3fic,2qan,2z4m,3kc4,3e1c,2wdh,4dr2,3tvf,3uz3,2qoy,2qp0,1yl4,3knh,2xsy,3df1,3uxs,1hr0,1xmq,3izv,3df3,3v2e,3j13,3j0z,3tvg,3kis,2uxc,3bbn,3huw,3uyd,2z4k,4dhb,3sfs,3j0v,2uxd,2qal,4lf6,2qow,2qbd,4k0k,4dh9,3j53,2qou,2xg1,2qbb,2qbj,3f1e,3fih,1vs5,3knj,2qbh,3uzi,4b3m,3uzg,1vs7,2qnh,1n32,4jv5,4w2c,3j4z,4juw,4lfc,4lf9,4ji7,4b3t,4b3r,4cr1,4kbv,4kcy,4lf7,4btc,4b3s,1vxs,4nw0,4kd0,4qco,3j57,4nxn,3j5d,4qcy,4tp2,4ji2,3j5h,4lfa,3j5f,4qcq,4kjc,3j5t,3j5n,4gkj,4kdj,3v6u,3j6v,4kj8,3j59,4kbt,4kj0,2uxb,4a2i,4ji6,1hnx,4kda,3v6v,4ji4,4rb5,4qs0,4lf8,4tpc,3j4w,4tou,4rb9,4ji5,4lf5,4ji1,4nxm,4pea,4byb,4byd,4kvb,4kj4,4kdg,4ji8,4rb7,4ji0,4jya,4l6m,3j4y,3j5b,4khp,4kx1,4kiy,1vvx,2xfz,4kfh,4lfb,3j4v,4l6k,4kj2,4adv,3j55,3j00,1i94,2hhh,2v46,3oto,3uz6,3oi0,3i9d,3uxt,1xnq,2uub,1n33,2j02,3ora,2wrq,2wh3,2hgr,2gyb,2vhp,3znd,4gkk,3ofp,1xnr,2e5l,1xmo,1vos,4duy,3ofo,2j00,1fka,3ofa,2wri,1ibm,2zm6,1n34,2wwl,1pns,2xqd,3i8h,2uu9,3ohy,3i1o,3ms0,3d5c,3i8g,2i2p,2vqf,1voq,2x9t,2ow8,1vov,3ogy,3i1m,3kiq,3ohd,2wh1,1vox,3j36,4g5m,3oi2,1hnz,4g5t,1ibl,3ohc,3mr8,2b9m" "PF01250.12" "371" "2.40" "4rb7.F_2-93.4rb7.pdb1.pdb"
"4ujr" "Ribosomal_S7e" "rna" "Ribosomal protein S7e" "3jam,4ukp,4uku,4d5l,4ujz,4ul1,4d61,4ujw,4ulm,1vxw,4ujf,4ukw,3j7a,4ul4,4ulp,4ulg,4ulb,4ukf,4ul9,4ulj,4uq5,4ujm,4uk1,4uju,5a2q,1vwv,4ukk,4ujh,4ukb,4uk6,4uk9,4ukr,4uk4,3j80,4ujp,4uer,2xzm,4bpe,2xzn,4bpn,4ule,4w28,4w23,1vxz,1vx2,4ujk,4kzz,4cxc,4ulr,1vw9,3j81,4ukh,4ujr,4kzy,4ul6,1vx5,4uq4,4ukz,4bpo,4ukm,4bpp,4kzx" "PF01251.13" "62" "2.80" "4ujr.l_6-187.4ujr.pdb2.pdb"
"3jam" "SUI1" "rna" "Translation initiation factor SUI1" "4bpp,2xzm,2xzn,4uer,3j80,3jam,4bpe,4kzx,4bpn,4kzy,4bpo,3j81" "PF01253.17" "12" "3.46" "3jam.j_23-101.3jam.pdb1.pdb"
"2nq9" "AP_endonuc_2" "dna" "Xylose isomerase-like TIM barrel" "1qum,2nqj,4k1g,2nq9" "PF01261.19" "4" "1.45" "2nq9.A_19-239.2nq9.pdb1.pdb"
"3pla" "Fibrillarin" "rna" "Fibrillarin" "3pla" "PF01269.12" "1" "3.15" "3pla.E_6-231.3pla.pdb1.pdb"
"1vq8" "Ribosomal_L19e" "hybrid" "Ribosomal protein L19e" "3ow2,1nji,1k9m,1vqo,1vq8,1k8a,2wwb,1q86,1k73,3cme,3i55,1kc8,1vqp,3cxc,1vq7,1qvf,1s72,3i56,1q7y,1s1i,1vqn,2otj,2ww9,3ccm,1vq4,3cma,2qex,1yjw,1yit,2wwa,1yi2,2qa4,1vq9,1kd1,3cd6,1jj2,3cc4,1kqs,1m90,3o58,1yij,1yjn,1q81,1vq5,1q82,1m1k,1qvg,1vqm,1yj9,1w2b,1vqk,3o5h,1yhq,1vq6,1vql,2otl,3ccq,3ccv,3g6e,3ccr,3g71,3cpw,3cce,3ccs,3ccu,3ccj,3ccl,3g4s,4hub,3cc2,3cc7" "PF01280.15" "71" "2.20" "1vq8.P_1-143.1vq8.pdb1.pdb"
"4rb6" "Ribosomal_L9_N" "rna" "Ribosomal protein L9, N-terminal domain" "3j5e,3j56,4k0q,3j51,4kj5,3j5g,3j5u,4kjb,4qcn,4kj7,4kfl,4l6l,3j4x,4qcx,4kfi,4too,1vxl,1vy3,1vvm,4byc,4qd1,3j5k,3j8g,4kj1,4kiz,4nw1,3j5a,1vvs,4nvv,3j5c,4kj9,2xg0,3j7y,3j52,4qcp,3j58,3j5i,4tox,4rba,3v6w,1vy1,3j5o,4nvz,2xg2,3j50,4k0m,3j7z,4kix,3ofd,3ms1,3og0,3kit,2qox,3pyr,2x9s,3uye,3uzh,3mrz,3pyt,3j54,3i20,2qao,1vou,3izu,3hux,3v29,2vhn,2i2v,3knk,3ohz,3uz1,3j0w,3oi3,2qba,2qam,3i9c,3pyo,3oat,1vow,3kir,4g5w,2v49,3ofz,2qbg,2qbe,4ejc,2j28,3oi1,3ofc,3j12,3oh7,2wdi,3uz2,3pyv,3ohk,2gyc,2qbi,3v6x,3i22,3j5l,2qbk,1vp0,4rbc,3d5d,2x9u,3v23,3r8t,3zne,3uzn,3j37,3uyg,2aw4,3v2d,3zn9,3kno,4g5u,4gau,4ejb,2awb,4g5l,3izt,3v27,3j19,3uzk,4gar,3j5w,3i1t,4g5n,3v2f,4kj3,3i1r,3huz,3oas,3r8s,3v25,4v19,1vw0,4w2b,4war,1vvy,4rbi,4wwe,4l6j,1vxj,4peb,1vx9,4pec,4wwt,4tp9,4tov,1vvw,1vvu,1vxq,4rb8,3j01,4tpb,1vvq,4rbe,4tpf,4qcr,4tp5,4rbk,4tp1,4wap,4qct,4uy8,4qcv,1vxn,1vxt,4rb6,4w2d,4kx2,4kx0,4tpd,4tp7,4tom,1vvo,4rbg,5aka,4tp3,4qcz,3kni,4dha,3tvh,3uzf,3j0y,3bbo,3f1f,3d5b,3j0t,1vs8,1yl3,3uz9,3fik,3uxr,3e1b,1vsp,4nvx,2b9p,2hgq,3f1h,3tve,3j14,3j11,3uz8,4bye,4dhc,3oh5,3i9e,2vhm,2qp1,2gya,3fin,2qbc,3i8f,2b9n,3df4,3i8i,2wh2,2z4n,2j03,2wdj,3oi5,2j01,2qov,2wh4,2i2t,3kcr,2v47,1vor,1vs6,2hgj,1voy,3orb,2qoz,3knm,3ofr,3df2,1vsa,2z4l,3uxq,2wdn,3i1p,1vt2,3ofq,2wdl,2hgu,4csu,3kiy,3i1n,3kiw,2wwq,3ohj,3e1d,2b66,3bbx" "PF01281.14" "256" "2.40" "4rb6.I_1-48.4rb6.pdb1.pdb"
"4ujp" "Ribosomal_S24e" "rna" "Ribosomal protein S24e" "3jam,4bpe,2xzm,2xzn,4uer,4uq4,4kzy,3j81,1vw9,4cxc,1vxz,4ul6,1vx5,4ujk,4w23,4ulr,4ukz,4ukm,4w28,4ukh,1vx2,4ujr,4bpp,4kzz,4kzx,3j43,4bpn,4ule,3j20,4bpo,3j16,4uk1,4ukr,4ujh,4ujm,4uk9,4d61,1vwv,4d5l,4ulm,4ukw,4ujz,4ulj,4ul9,4ujp,4ulg,3j80,4uju,4uq5,4ul4,4ukp,1vxw,4ujf,4ukb,4uk6,4ukf,4ujw,5a2q,3j7a,4ukk,4uku,4ul1,4ulp,4uk4,4ulb" "PF01282.14" "65" "2.80" "4ujp.Z_23-106.4ujp.pdb1.pdb"
"4ujp" "Ribosomal_S26e" "rna" "Ribosomal protein S26e" "4ukf,1vwv,4ujz,4uq5,4ujp,3j7a,4uk4,4uju,4ulp,4d5l,4ukp,4ulj,5a2q,4ul9,3j80,4ujf,4uku,4d61,4uk9,1vxw,4ul4,4ukk,4uer,3jam,4bpn,4ule,4kzz,4bpp,1vx5,4ujk,4w28,4bpo,4kzy,1vw9,4uq4,1vxz,4cxc,4ukz,3j81,4w23,1vx2,4bpe,2xzm,4kzx,2xzn" "PF01283.14" "45" "2.80" "4ujp.b_2-98.4ujp.pdb1.pdb"
"4ujq" "Ribosomal_L13e" "rna" "Ribosomal protein L13e" "4a18,4a1b,4a1d,4a19,4uka,4ul5,4ul0,4ukg,4ulk,4ulq,4ukl,4ulf,4ujv,4ujl,4ujg,4ujq,4ukv,4ukq,4uk0,4ula,4uk5" "PF01294.13" "21" "2.80" "4ujq.N_7-173.4ujq.pdb1.pdb"
"3lap" "Arg_repressor" "dna" "Arginine repressor, DNA binding domain" "2p5l,3lap,3fhz,3laj,3ere" "PF01316.16" "5" "2.15" "3lap.C_16-91.3lap.pdb1.pdb"
"1cwp" "Bromo_coat" "rna" "Bromovirus coat protein" "1cwp" "PF01318.13" "1" "3.20" "1cwp.C_27-190.1cwp.pdb1.pdb"
"2isz" "Fe_dep_repress" "dna" "Iron dependent repressor, N-terminal DNA binding domain" "1u8r,1f5t,2it0,2isz,1ddn,1c0w" "PF01325.14" "6" "2.40" "2isz.C_3-62.2isz.pdb1.pdb"
"4owx" "tRNA_anti-codon" "dna" "OB-fold nucleic acid binding domain" "3kfu,1asz,1efw,1il2,1c0a,1asy,4gnx,3amu,4oww,3u58,4gop,3amt,4wj3,4owx,1jmc" "PF01336.20" "15" "2.30" "4owx.B_22-105.4owx.pdb1.pdb"
"1mjo" "MetJ" "dna" "Met Apo-repressor, MetJ" "1mjo,1mjq,1mjp,1cma,1mj2,1mjm" "PF01340.15" "6" "2.10" "1mjo.B_1-104.1mjo.pdb1.pdb"
"3o3f" "RNase_HII" "hybrid" "Ribonuclease HII" "4hht,3o3f,3o3g,3o3h,4py5" "PF01351.13" "5" "2.00" "3o3f.A_15-188.3o3f.pdb1.pdb"
"1av6" "PARP_regulatory" "rna" "Poly A polymerase regulatory subunit" "3er8,1av6" "PF01358.13" "2" "2.80" "1av6.A_4-296.1av6.pdb1.pdb"
"4u7b" "Transposase_1" "dna" "Transposase (partial DDE domain)" "4r79,4u7b,3hot,3hos" "PF01359.13" "4" "3.09" "4u7b.A_161-241.4u7b.pdb1.pdb"
"3zdb" "5_3_exonuc" "dna" "5'-3' exonuclease, C-terminal SAM fold" "3zdb,3zdd,3zda,3zdc" "PF01367.15" "4" "1.47" "3zdb.B_160-250.3zdb.pdb1.pdb"
"1tro" "Trp_repressor" "dna" "Trp repressor protein" "1tro,1trr" "PF01371.14" "2" "1.90" "1tro.G_17-104.1tro.pdb2.pdb"
"2r1j" "HTH_3" "dna" "Helix-turn-helix" "3jxb,3clc,3cro,1lli,3hzi,3jxd,1rio,3u3w,4iwr,4i8t,4ivz,4yg7,3bdn,3jxc,4x4i,2r1j,1lmb,3dnv,3qyx,3zkc,4x4c,3s8q,4x4g,3zhm,3ufd,4x4d,4yg1,4x4h,4x4e,4x4b,4x4f" "PF01381.17" "31" "1.53" "2r1j.R_10-64.2r1j.pdb1.pdb"
"1dfu" "Ribosomal_L25p" "rna" "Ribosomal L25p family" "1vxq,4tp1,4rbk,4tom,4tp5,4qcv,4qcr,4kx2,4tpd,4tpb,3j01,4wap,4l6j,4tp3,1vvw,4kx0,4wwt,4rbe,4tpf,1vvu,4qs3,3pio,4rbg,1vvq,4w2b,4uy8,3j8g,5aka,4rb8,4u67,4qcz,1vxn,4qs1,4pec,4rb6,4wwe,4rbi,1vw0,4qct,4war,4tp7,4tp9,1vvy,1vx9,4peb,1vvo,4w2d,1vxt,1vxj,4tov,3dll,3j51,4nw1,1vvm,4kdk,4qcp,3j58,3j5u,3j50,3v6w,1vxl,4k0q,4tox,4nvv,4kfl,3j5a,4too,2xg0,4kj7,1vy1,4kdh,1vy3,4kbu,3j5w,4k0m,4kdb,3j54,3j52,4kiz,4byc,3j5k,4qcx,4jux,4rbc,4btd,3j5g,3j56,4nvz,4kfi,4qjs,3j5e,3j4x,4l6l,4kcz,4rba,4kjb,3j5i,3j5o,4kj9,4kix,2zjq,1vvs,4kj5,4kd2,4kj1,3pyo,3uz1,3uzh,2qam,3kit,2qao,3knk,3r8t,2qbe,3i9c,2wrl,1yl3,3ms1,3ofc,3uz2,3d5d,2qbi,3ofd,3og0,2zjr,2wrj,3hux,1vou,2qbg,3i20,3uos,2i2v,3uye,3sgf,1vp0,2qox,3i22,2qbk,3j0w,3izu,3pyr,4qcn,2j28,2wdi,3pyv,3v29,3pyt,3mrz,1vow,2vhn,3ofz,4qd1,2qba,3pip,2gyc,3uz8,2b9p,1dfu,3j0t,3v2d,3fik,3j0y,3v2f,1vsp,3j19,3tvh,3f1h,3f1f,4dhc,4csu,3j11,4nvx,2xux,4bye,3cf5,4ejc,3v27,3j7z,1feu,3j14,3uzf,3tve,4kd9,3kni,3r8s,3fin,3oi5,4ioc,3oi1,3ohz,2awb,3ohk,3ohj,3v23,3i1r,4g5n,3oh5,3zne,3oh7,3oi3,4io9,4g5u,3i1t,2y0z,2y0x,3v25,2y0v,2xtg,3oas,3uzn,2wh4,2y13,3bbx,2wh2,4g5l,2y11,2x9u,2x9s,2v47,2v49,3zn9,2y19,3v6x,2aw4,4ioa,2y17,2y15,2wdj,3uzk,3j37,4ejb,4gau,4b8g,3izt,4kj3,3zvp,3j5c,3df4,3e1b,3uyg,3df2,3e1d,2j03,1vs6,1vs8,3huz,4gar,4abs,2j01,3kno,1vsa,2zjp,1voy,2qov,2z4n,3kir,2vhm,2qbc,3knm,3kcr,2wdl,3d5b,3i9e,3kiy,3ofr,3i8i,2wdn,3i1n,3i1p,3orb,2qoz,2wro,3uxq,2hgu,1vt2,4kbw,3oat,2wwq,4dha,2z4l,2wrr,4b8i,3kiw,2i2t,3j12,2qp1,3ofq,2hgj,2hgq,1vor,4g5w,2b9n,2b66,3uz9,3uxr,3j5l,3i8f,2xqe" "PF01386.14" "298" "1.80" "1dfu.P_4-91.1dfu.pdb1.pdb"
"1b01" "RHH_1" "dna" "Ribbon-helix-helix protein, copG family" "2hzv,1b01,1ea4" "PF01402.16" "3" "2.56" "1b01.B_4-42.1b01.pdb1.pdb"
"1u0b" "tRNA-synt_1e" "rna" "tRNA synthetases class I (C) catalytic domain" "1u0b" "PF01406.14" "1" "2.30" "1u0b.B_14-314.1u0b.pdb1.pdb"
"3tup" "tRNA-synt_2d" "rna" "tRNA synthetases class II core domain (F)" "1eiy,2iy5,3tup" "PF01409.15" "3" "3.05" "3tup.A_34-173.3tup.pdb1.pdb"
"3wqy" "tRNA-synt_2c" "rna" "tRNA synthetases class II (A)" "3wqz,3wqy" "PF01411.14" "2" "3.30" "3wqy.A_64-592.3wqy.pdb1.pdb"
"2nqp" "PseudoU_synth_1" "rna" "tRNA pseudouridine synthase" "2nr0,2nre,2nqp" "PF01416.15" "3" "3.50" "2nqp.C_14-112.2nqp.pdb1.pdb"
"2y7h" "Methylase_S" "dna" "Type I restriction modification DNA specificity domain" "2y7h" "PF01420.14" "1" "18.00" "2y7h.A_318-405.2y7h.pdb1.pdb"
"3rer" "LSM" "rna" "LSM domain " "3rer,2y9a,4pjo,3ahu,1m8v,2y9b,4ht8,4ht9,4m7a,4m7d,4nl3,4v2s,4qvc,2y9d,3gib,2y9c,3qsu,3hsb,1i5l,1kq2,4qvd" "PF01423.17" "21" "1.70" "3rer.F_6-64.3rer.pdb1.pdb"
"3kfu" "Amidase" "rna" "Amidase" "3kfu" "PF01425.16" "1" "3.00" "3kfu.E_19-448.3kfu.pdb1.pdb"
"4da4" "BAH" "dna" "BAH domain" "4da4" "PF01426.13" "1" "2.60" "4da4.B_935-1103.4da4.pdb2.pdb"
"3vxv" "MBD" "dna" "Methyl-CpG binding domain" "4lg7,3vyq,3vxx,3vxv,3vyb,3c2i" "PF01429.14" "6" "2.00" "3vxv.A_71-135.3vxv.pdb1.pdb"
"4n0o" "Viral_helicase1" "dna" "Viral (Superfamily 1) RNA helicase" "4n0o" "PF01443.13" "1" "2.65" "4n0o.E_154-390.4n0o.pdb3.pdb"
"1r3e" "PUA" "rna" "PUA domain" "3hjw,3lwv,3lwq,3lwp,3lwo,1j2b,3lwr,2hvy,3hay,3hax,3mqk,1r3e,2rfk,3hjy" "PF01472.15" "14" "2.10" "1r3e.A_239-315.1r3e.pdb1.pdb"
"4mte" "FUR" "dna" "Ferric uptake regulator family" "4mte,4rb2,4mtd,4rb3" "PF01475.14" "4" "2.50" "4mte.A_19-140.4mte.pdb1.pdb"
"4lgt" "S4" "rna" "S4 domain" "3knl,2wdm,3zn7,2uua,2y0w,3f1g,2y18,1voz,1s1h,3j0u,3uoq,2aw7,2y12,3pys,2y14,3pyq,2wdg,2y16,3d5a,3kix,3oge,3pyn,2b64,2hgi,2uuc,2b9o,3uxt,4duy,2vqe,3oaq,2y10,4dv7,3i9b,2y0y,2y0u,1pnx,2f4v,2wdk,3pyu,2hgp,4ukm,2ykr,3oi4,4k0k,3dh3,3i1z,3j13,4lf6,3j5x,2wwl,1hnz,3uzi,3izv,3i1o,3i1m,3df3,2wdh,2i2u,1fjg,1ibm,1hnw,1ibl,1yl4,3jyv,2qal,4dhb,2x9r,2uxc,2xzm,3uxs,2xzn,1hr0,3bbn,3j53,2qnh,3kis,4dh9,3tvg,3kc4,3jam,4k0p,3e1a,1i94,3uz6,3huw,1vs5,1ibk,2wrq,3uz3,4gkk,2xqd,1vs7,2wrn,3uyd,3knh,2wri,2wrk,4bpe,3i21,3e1c,3uz7,2qou,3uzg,2vhp,3kiu,4gd1,3j0v,2qbf,1xmq,3tvf,2z4k,2xg1,2qb9,2vho,2qow,3fic,1j5e,2qbb,3knj,1n36,2z4m,1n32,3j0z,2qbj,4bpp,2xsy,2qoy,3f1e,2qp0,2qan,2gyb,2qbh,3df1,4nvu,3v2e,4dv3,3sfs,4dr2,2qbd,2i2p,3fih,1fka,4ulr,4lf7,1vw9,4kiy,4ji5,4kj8,4gkj,4tp2,4bpo,3j5f,4ul6,4cxc,4lfc,4b3t,4kdj,4w23,3j59,4nxn,4kd0,4kfh,3j5h,4lfa,1vxs,4kvb,3j57,4w2c,1vx2,1vx5,4juw,4kbv,3j5d,4kcy,4ukh,4rb7,3j5n,4uq4,4kj0,4btc,2xfz,4nvw,4l6m,1vxz,3j55,4b3r,2uxb,4kjc,4kbt,4a2i,4qco,4kx1,4ji2,4tpc,4rb9,4adv,4kda,4pea,4qcy,4lf5,4ji6,4tou,3v6v,4ujr,4byd,1hnx,4ji4,4qs0,4lgt,4l6k,3j4w,4rb5,3j81,1vy2,4lf8,4jv5,4w28,3v6u,4jya,4qcq,3j4z,4nxm,4kdg,4kj4,4byb,4kj2,4nw0,4kzy,3j5b,4kzz,4ji0,4ji7,4ujk,4cr1,4ukz,4b3s,3j5t,4kzx,4lf9,3j4y,4khp,1vvx,3j00,3j4v,4lfb,4ji8,4ji1,4uer,4ukr,4aqy,4rbj,4uk9,1vxp,4ujm,5a2q,4qcu,1vx8,4tpe,4d61,1vxm,4ulj,4d5l,4qcw,1vxk,1vvl,4qcm,4wus,4ul9,4uq5,4ukp,1vxi,4ulm,4rbf,4tp6,4ulg,3j7a,4uk6,4ulb,3j80,4ujf,4rbh,4qcs,4ji3,1vvp,4ox9,1vvv,4pe9,4yhh,1vvn,4ukk,1vy0,4ukb,4qs2,4uju,4uku,1vwv,4ton,4wao,4uk4,4w2a,4ujp,4kwz,4tow,4ukw,4tp0,1vxw,4qd0,4rbd,4tpa,4ul4,4rbb,1vvt,4ujz,1vvz,4wt8,1vvr,4ujw,4ukf,4tp8,4ujh,4ul1,4waq,4ulp,4nvy,4tp4,4qjt,4uk1,4tol,4ej9,3j43,3i1q,3j5j,3v22,3j10,4gaq,3uzl,3knn,4duz,4k0l,4dv0,4g5k,3uyf,3huy,4dv6,4b8f,4dr1,4dr6,3j0x,3i1s,3v28,4eja,4dr4,3j20,4gas,3v26,4kj6,4dv1,4g5v,3ofa,4gd2,4kfk,2avy,3ofy,4dr7,4dv4,3t1y,3ofb,4kd8,3ofx,3j18,3ofp,3uz4,3ofo,4abr,3t1h,4bpn,3oar,2xuy,3or9,4dr3,4dv5,2v48,2uxd,3o30,3o2z,3v2c,3ora,4kja,3uzm,4b8h,4dv2,4ule,3izw,3zvo,4dr5,3v24,3ohd,3d5c,2j02,1pns,2x9t,2vqf,2hgr,3ogy,1voq,3mr8,3i9d,3ohy,3j36,2uub,4g5m,2v46,1vov,2wh1,2wh3,3i8g,4b3m,3ohc,4g5t,2hhh,2b9m,1vox,4lf4,2uu9,2ow8,3ms0,3oi2,3i8h,2zm6,1xmo,1n33,3znd,3oto,1n34,3kiq,2e5l,3oi0,2j00,1xnr,1vos,1xnq" "PF01479.20" "441" "1.30" "4lgt.A_3-50.4lgt.pdb1.pdb"
"4ujp" "IBR" "rna" "IBR domain" "3jam,4ujk,4ukz,3j81,1vw9,1vxz,4ule,4uer,4ukp,1vxw,4ulp,4ul4,3j80,4ujp,4uk4,4ul9,4ujf,4ulj,4uju,4ukf,4ujz,4uk9,4uku,1vwv,4ukk" "PF01485.16" "25" "2.80" "4ujp.c_14-72.4ujp.pdb1.pdb"
"1k8w" "TruB_N" "rna" "TruB family pseudouridylate synthase (N terminal domain)" "3hjw,1ze2,2hvy,3hax,3mqk,2ab4,1r3e,1k8w,3hjy,2rfk,3hay,1zl3,3lwo,3lwp,3lwr,3lwq,3lwv" "PF01509.13" "17" "1.85" "1k8w.A_33-180.1k8w.pdb1.pdb"
"4m59" "PPR" "rna" "PPR repeat" "4oe1,4m59" "PF01535.15" "2" "2.46" "4m59.A_246-276.4m59.pdb1.pdb"
"4zcf" "N6_N4_Mtase" "dna" "DNA methylase" "4zcf" "PF01555.13" "1" "2.60" "4zcf.B_117-479.4zcf.pdb1.pdb"
"4ujp" "Ribosomal_S27" "rna" "Ribosomal protein S27a" "4bpe,4bpp,4ule,3j20,4ukz,4kzy,4w28,3j81,4ujk,4bpo,4uq4,4w23,1vw9,1vxz,4cxc,1vx5,1vx2,4uer,3jam,4ujf,4ulj,4ukf,4uku,4d5l,5a2q,4ul4,4ukk,4ul9,4ujp,1vxw,4ujz,4uk4,4d61,4ulp,4uju,4uk9,4uq5,3j80,4ukp,1vwv,4bpn,3j43,4kzz,2xzn,4kzx,2xzm" "PF01599.14" "46" "2.80" "4ujp.g_101-147.4ujp.pdb1.pdb"
"1mus" "DDE_Tnp_1" "dna" "Transposase DDE domain" "4dm0,1mm8,1muh,3ecp,1mus" "PF01609.16" "5" "1.90" "1mus.F_124-363.1mus.pdb1.pdb"
"2kfn" "DNA_pol_A_exo1" "dna" "3'-5' exonuclease" "1qsl,4oo1,1kln,1d9d,1d9f,1ksp,1d8y,1krp,1kfs,2kfz,2kfn,2kzm,2kzz,5c0w,5c0y" "PF01612.15" "15" "2.03" "2kfn.A_330-517.2kfn.pdb1.pdb"
"1wb9" "MutS_I" "dna" "MutS domain I" "1w7a,1ng9,2o8c,1oh7,1ewq,2o8d,1oh8,1wb9,1fw6,2o8b,2o8f,1nne,2wtu,1oh6,3thw,3thz,3zlj,3thx,3thy,1e3m,3k0s,1wbd,1oh5,2o8e,1wbb" "PF01624.15" "25" "2.10" "1wb9.A_11-123.1wb9.pdb1.pdb"
"4rb8" "Ribosomal_L35p" "rna" "Ribosomal protein L35" "2v47,3bbo,2wdj,4bye,3e1b,3j0y,3j37,2wdn,2v49,3zvp,2j01,3e1d,2wdl,2wh2,2j03,3v6x,4b8i,2wh4,3j11,2wrr,3uos,4kd9,2xux,4nvx,3kir,2x9s,3j0t,4kbw,4csu,2xtg,2wwq,3j19,2wro,2xqe,3tve,4ejc,2wrl,2wrj,3fik,3j14,4kd2,3sgf,2x9u,2b9p,2qbc,2z4n,3df2,3i1p,3i1n,3df4,3j12,2qoz,2aw4,1vs6,2b9n,2z4l,3j5l,3kcr,1voy,2qov,3ofr,2i2t,1vt2,3fin,2qp1,3ofq,3orb,2b66,1vs8,1vor,3bbx,3oat,1vvq,1vxt,4tpb,5aka,1vvw,4qcr,1vxj,3j8g,1vvy,1vxn,4rbk,4v19,4pec,4kx2,4rbi,1vx9,4qcv,4qs1,4qct,1vw0,4wap,4tp5,4l6j,4w2b,4tp7,4qs3,4wwe,4peb,4qcp,4u67,4rbg,4rb6,4tom,4kx0,4tpd,4war,1vvo,4tov,4tp9,4uy8,3pio,4tp3,1vvu,4rb8,4qcz,1vxq,4tp1,4w2d,4wwt,3j01,4rbe,4tpf,2qbe,3r8s,2qba,2y11,4abs,2i2v,2qao,1vow,3ofz,3ofc,2qbi,2qam,2y13,2y15,2y0x,2qbg,4qd1,3ofd,2y0z,3j0w,2qox,2y0v,3izu,2y17,2qbk,3r8t,3og0,3i20,2y19,3i22,1vp0,2wdi,1vou,3uzn,3uzh,3v23,4g5l,4b8g,3oi3,4gar,2hgu,3i9e,3oi1,3oh7,4g5w,3j7y,4ejb,4g5u,4g5n,3uzk,3zn9,3i9c,2vhn,1yl3,3v25,3v2d,3v27,2vhm,3v29,3huz,3hux,1vsa,4kj3,3oas,1vsp,3ms1,3mrz,4dhc,3oi5,3f1h,2hgq,2awb,3i1r,2hgj,4dha,3i8i,3i8f,3i1t,3v2f,3izt,3ohj,3d5b,3knm,3pyr,3uzf,3kno,3uye,2j28,3kni,3ohk,3knk,3j5c,3uz2,3f1f,3d5d,3pyt,3uyg,3ohz,3uz8,3oh5,3uxr,3pyv,3kiw,3j7z,3zne,3tvh,3kit,4gau,3pip,3pyo,3kiy,3uz9,3uxq,3uz1,3j58,1vy1,3v6w,4kj9,4qcn,3j5u,3j5o,4qcx,4kix,3j51,3j5a,3j5k,4kiz,3j50,1vxl,3j4x,4kj7,4kcz,3j52,4kdk,1vy3,3j56,4l6l,3j5e,4rbc,4nvz,4k0m,4byc,4nvv,3j54,4kdb,4kfl,4btd,2xg0,1vw4,4jux,4rba,4kj1,4kbu,4qjs,3j5i,4kjb,1vvs,4kdh,4kj5,4k0q,3j5w,4ce4,2xg2,4tox,4kfi,3j5g,4too,1vvm,4nw1" "PF01632.14" "293" "2.40" "4rb8.8_2-62.4rb8.pdb1.pdb"
"4hqe" "HxlR" "dna" "HxlR-like helix-turn-helix" "4hqe" "PF01638.12" "1" "2.30" "4hqe.A_14-105.4hqe.pdb1.pdb"
"4rb7" "Ribosomal_S20p" "rna" "Ribosomal protein S20" "4tpc,4adv,4lfa,4byb,4qcq,1vxs,4lf5,4kda,4b3r,4tp2,4kj2,4pea,4juw,4byd,3j00,4lf9,4kiy,4b3m,4ji1,4kd0,4btc,3j4y,4a2i,4lfb,3v6v,4khp,4cr1,3j5h,1hnx,4qco,4ji7,4qcy,4ji4,4kfh,3j59,4rb9,4ji8,3j5b,3j5n,4nvu,1vy2,3j55,3j4w,3j4z,4lf7,4lfc,4ji6,4tou,4b3t,4l6m,4ji2,4kbv,4kx1,4b3s,3j5t,4kj8,4lf8,3j5d,3j5x,4nxm,4kvb,3j4v,4kbt,4kj0,4nw0,4jv5,2xfz,3j5f,4gkj,4qs0,4l6k,4kdg,4kdj,4kj4,4kcy,4kjc,4rb5,3v6u,4jya,4ji0,4ji5,4lf6,4qs2,4tpe,1vvr,4wus,4waq,1vvz,1vvt,4rbj,1vxp,1vvv,4qcs,1vx8,1vxi,4rbh,4nvy,4wt8,1vvn,1vxk,4ji3,4tp0,4aqy,4tol,4rbd,4wao,4qjt,4w2a,4rbb,4tp4,4ox9,1vvl,1vvx,4tp8,4rbf,4qcw,4tp6,4qcm,4qcu,4yhh,4ton,1vvp,4tpa,4qd0,4pe9,1vy0,4tow,4kwz,1vxm,4dv5,3uzi,1xmq,3j53,3izw,3fih,3sfs,4k0k,3uxs,3f1e,3uyd,2xsy,3tvf,3j0v,3j0z,2uxc,3uzl,3knh,2avy,2uxb,4dhb,3v2e,3e1c,3zvo,4k0l,3bbn,2qnh,4dh9,3tvg,3uz3,3kis,3knj,4dv2,4kj6,3e1a,3kc4,1hnz,1vov,2xqd,1n36,3ohc,2vqe,2hgr,2b9m,3d5c,3i9d,4g5m,4duy,2ykr,1i94,1ibm,2i2p,2gyb,3ms0,3j5j,3i8h,3i1m,2qbd,3f1g,2uu9,4ej9,2j00,2wwl,2v48,2qou,3znd,2wrq,1n32,2y14,2e5l,3knn,3oto,3oi2,3j13,1vs7,2v46,2wdh,1xnr,3ofo,3ofp,1yl4,3izv,4w2c,3ora,1vs5,3oi0,1voq,3df3,4gkk,3ohd,2j02,3mr8,1pns,2wh1,2qal,3huw,1n33,3ogy,2x9t,3j0u,2qoy,3ofa,1ibl,2wri,3kiq,3oaq,2ow8,3i8g,1xnq,2zm6,1vox,3ohy,3i1o,1xmo,2uub,2qp0,2vhp,1vos,3df1,2vqf,2wdg,2hhh,3uz6,3v24,2z4m,2wh3,2xg1,3v28,4dv6,4duz,3t1y,4dv1,4g5t,4dr3,4abr,4kja,3v22,4dv0,3v2c,4k0p,4dr6,4rb7,4b8h,3j10,4gaq,4dr1,4dr4,4nxn,3uyf,4nvw,2xuy,4eja,3huy,4dr7,3v26,3j57,3i1s,1n34,4kfk,3t1h,2uxd,4b8f,3j36,4kd8,3j18,3uzm,4g5v,4g5k,3j0x,3i1q,4gd2,3uz4,4gas,2hgi,3or9,1pnx,1fjg,2x9r,1hnw,4dv7,2uua,2hgp,1voz,2wrk,4dr2,3i9b,2y10,2i2u,1hr0,3kiu,2qow,3ofx,3oi4,2qan,2y12,2f4v,2aw7,2b64,3i1z,3zn7,4lf4,1j5e,3knl,2qb9,3uz7,4dv4,2qbh,2b9o,3pys,4dv3,2y18,3kix,3uzg,2y16,4dr5,1ibk,2uuc,2gy9,3ofy,3uxt,3uoq,3i21,3ofb,2qbf,2y0w,4gd1,2wdk,2wrn,2qbb,2z4k,2wdm,3oge,3fic,2y0y,3pyu,2qbj,2y0u,3oar,3pyn,2vho,3d5a,3pyq" "PF01649.13" "371" "2.40" "4rb7.T_8-90.4rb7.pdb1.pdb"
"4glx" "DNA_ligase_aden" "dna" "NAD-dependent DNA ligase adenylation domain" "4glx,2owo" "PF01653.13" "2" "1.90" "4glx.A_3-318.4glx.pdb1.pdb"
"1vqo" "Ribosomal_L32e" "rna" "Ribosomal protein L32" "1s72,1q82,1m90,1qvg,3cd6,1vqm,3o5h,1vq8,1q81,1yjn,1yij,1kd1,1nji,2qa4,3cc4,1jj2,1m1k,1w2b,1kqs,3o58,1vq9,1vql,1yhq,1vq5,2otl,1yj9,1vq6,1vqk,1vq4,1yit,3ccl,3ccm,2otj,1yjw,2qex,1vqn,3cma,1yi2,3cc2,4hub,3ccq,3cc7,3ccv,3cce,3g71,3g4s,3ccr,3g6e,3ccj,3ccu,3ccs,3j44,3ow2,3cpw,3cxc,1vqo,3i55,1s1i,1vq7,1k9m,1q7y,1k8a,1k73,1qvf,3i56,1kc8,3cme,1vqp,1q86" "PF01655.13" "69" "2.20" "1vqo.Y_124-231.1vqo.pdb1.pdb"
"3gpq" "Macro" "rna" "Macro domain" "3gpq,4tu0" "PF01661.16" "2" "2.00" "3gpq.B_20-125.3gpq.pdb2.pdb"
"1knz" "Rota_NSP3" "rna" "Rotavirus non-structural protein NSP3" "1knz" "PF01665.11" "1" "2.45" "1knz.I_7-163.1knz.pdb3.pdb"
"4ujp" "Ribosomal_S27e" "rna" "Ribosomal protein S27" "2xzm,3j43,2xzn,4kzx,4bpe,3jam,1vx2,4bpo,4w28,4w23,1vxz,4cxc,4kzy,3j81,4ukz,4ujk,1vx5,1vw9,4uq4,4uer,4ulp,4d61,4ul9,4ukp,4ukf,4uku,4uq5,4uk9,4ujz,4ujf,3j80,4d5l,4uk4,3j7a,4uju,1vxw,1vwv,4ukk,4ujp,5a2q,4ul4,4ulj,4bpn,4kzz,4ule,4bpp" "PF01667.12" "46" "2.80" "4ujp.c_28-82.4ujp.pdb1.pdb"
"2czj" "SmpB" "rna" "SmpB protein" "4abr,3j18,2czj,1p6v,3iyq,3iyr,3iz4" "PF01668.13" "7" "3.01" "2czj.A_2-70.2czj.pdb1.pdb"
"3bsu" "Cauli_VI" "hybrid" "Caulimovirus viroplasmin" "3bsu" "PF01693.11" "1" "2.10" "3bsu.H_27-70.3bsu.pdb2.pdb"
"2vy1" "FLO_LFY" "dna" "Floricaula / Leafy protein" "2vy2,2vy1,4bhk" "PF01698.11" "3" "2.10" "2vy1.A_237-395.2vy1.pdb1.pdb"
"1q2r" "TGT" "rna" "Queuine tRNA-ribosyltransferase" "1j2b,1q2r,1q2s" "PF01702.13" "3" "2.90" "1q2r.A_138-379.1q2r.pdb1.pdb"
"3foz" "IPPT" "rna" "IPP transferase" "3eph,2zm5,3foz,3epl,2zxu,3epk,3epj" "PF01715.12" "7" "2.50" "3foz.A_44-298.3foz.pdb1.pdb"
"3jso" "LexA_DNA_bind" "dna" "LexA DNA binding domain" "3jso,3jsp" "PF01726.11" "2" "2.29" "3jso.A_2-65.3jso.pdb1.pdb"
"4n48" "FtsJ" "rna" "FtsJ-like methyltransferase" "2xbm,4n48" "PF01728.14" "2" "2.70" "4n48.B_232-449.4n48.pdb1.pdb"
"4wc2" "PolyA_pol" "rna" "Poly A polymerase head domain" "1vfg,4wc4,3wfs,3wfq,4wc5,4wc2,3wfr,4x0b,4wc6,4wc3,4x0a,4wc7" "PF01743.15" "12" "2.80" "4wc2.A_13-139.4wc2.pdb1.pdb"
"4yvj" "tRNA_m1G_MT" "rna" "tRNA (Guanine-1)-methyltransferase" "4yvj,4yvk,4yvi" "PF01746.16" "3" "2.90" "4yvj.A_22-221.4yvj.pdb1.pdb"
"1mw8" "Toprim" "dna" "Toprim domain" "5bs3,4kpe,4kpf,4plb,2o19,2xcs,3l4j,2o54,3foe,4bul,2xct,3ltn,4gfh,4fm9,2xcr,4j3n,2rgr,3px7,2o5e,2o59,2o5c,3ksb,3fof,3ksa,3raf,3qx3,1i7d,4g0u,3l4k,3rae,2xkk,3k9f,3rad,1mw8,4g0w,4juo,4g0v,4i3h,4koe" "PF01751.17" "39" "1.90" "1mw8.X_4-142.1mw8.pdb1.pdb"
"2qbe" "RRF" "rna" "Ribosome recycling factor" "3j0e,3j0d,2z4l,1y69,2z4n,4gas,2qbi,2qbk,2qbg,2qbe" "PF01765.14" "10" "3.30" "2qbe.6_20-184.2qbe.pdb1.pdb"
"3pov" "Herpes_alk_exo" "dna" "Herpesvirus alkaline exonuclease" "3pov" "PF01771.12" "1" "2.50" "3pov.A_27-478.3pov.pdb1.pdb"
"4a1b" "Ribosomal_L18ae" "rna" "Ribosomal L18ae/LX protein domain" "4a19,4a18,4a1d,4a1b" "PF01775.12" "4" "3.52" "4a1b.X_18-141.4a1b.pdb1.pdb"
"4a19" "Ribosomal_L22e" "rna" "Ribosomal L22e protein family" "4a1b,4a18,4a1d,4a19" "PF01776.12" "4" "3.52" "4a19.M_12-111.4a19.pdb1.pdb"
"4a1d" "Ribosomal_L27e" "rna" "Ribosomal L27e protein family" "4a19,4a1b,4a18,4a1d" "PF01777.13" "4" "3.52" "4a1d.N_52-144.4a1d.pdb1.pdb"
"4a19" "Ribosomal_L28e" "rna" "Ribosomal L28e protein family" "4a1b,4a18,4a1d,4a19" "PF01778.12" "4" "3.52" "4a19.O_4-118.4a19.pdb1.pdb"
"4a18" "Ribosomal_L29e" "rna" "Ribosomal L29e protein family" "4a19,4a1d,4a1b,4a18" "PF01779.12" "4" "3.52" "4a18.T_3-42.4a18.pdb1.pdb"
"1vqo" "Ribosomal_L37ae" "rna" "Ribosomal L37ae protein family" "3ccq,4hub,3cc7,3cc2,2qa4,1nji,1s72,1yjn,1kd1,1vqk,1qvg,1vq9,1vq6,1yj9,1ysh,1q82,2otl,1yhq,1vql,1m90,3cc4,1vqm,1kqs,3cd6,1w2b,1vq8,1jj2,1yij,1m1k,1s1i,1vq5,1q81,3cpw,3ow2,1yit,3o5h,1yjw,3o58,3ccl,3g6e,3ccu,3g71,3ccv,3ccj,3cce,3ccs,3ccr,3g4s,1vqn,2otj,3j44,1yi2,1vq4,3ccm,3cma,2qex,1q86,1vqp,1k73,1k8a,1q7y,3i56,1kc8,1vqo,1k9m,1vq7,3cme,3i55,3cxc,1qvf" "PF01780.14" "70" "2.20" "1vqo.Z_10-82.1vqo.pdb1.pdb"
"4a18" "Ribosomal_L38e" "rna" "Ribosomal L38e protein family" "4a19,4a1b,4a1d,4a18" "PF01781.13" "4" "3.52" "4a18.P_2-77.4a18.pdb1.pdb"
"4rb6" "Ribosomal_L32p" "rna" "Ribosomal L32p protein family" "4wwe,3dll,5aka,4wwt,1vxt,4tp7,4tp9,4qs3,4w2b,4v19,4kx0,4rbg,4tom,4tp1,1vvq,1vvo,3j8g,4rb8,4l6j,4qcv,4tp3,4qs1,3j01,1vvw,4rbe,4kx2,4tov,4wap,1vxq,4tp5,4u67,4qcz,1vxn,4qcp,4rbk,4w2d,4qcr,4tpb,4qct,4peb,1vxj,1vw0,4pec,4rb6,1vx9,3pio,4tpd,1vvy,4uy8,1vvu,4war,4tpf,4rbi,4kj9,4kdb,3j50,4qcx,1vvs,4too,3j5k,3j5o,2xg0,3j7y,4kfi,4kix,3j5e,4kiz,4btd,4byc,4kfl,3j51,4tox,3j5a,4kdh,1vy1,3j3w,3j5w,4kcz,3j52,1vy3,3j54,4kd2,3j58,1vxl,4k0m,4rbc,3j5l,4l6l,4kdk,3j4x,4kj7,4ce4,4nw1,3j5i,3j56,4kj1,4csu,3v6w,4qcn,4nvz,3j5u,4kj5,2zjq,4nvv,3j5g,1vvm,3j3v,4rba,4kbu,2xg2,4qjs,4kjb,4jux,4k0q,2zjr,3v27,2qam,2wdi,2qbi,2y0v,3pyt,3uz1,2qbk,3uzh,2qbg,1vou,3og0,3ofd,2qba,3kit,3v29,2y0z,3d5d,2qox,2gyc,1yl3,1vp0,3ms1,3uye,3i20,2y0x,3uz2,3mrz,1vow,4qd1,3i9c,3r8t,2qao,2y13,3hux,3ofz,3ofc,3i22,3knk,3i1r,3pip,2i2v,2y17,4abs,3pyv,3izu,2y11,3j0w,3pyr,2y15,3v2d,2qbe,2y19,3j14,3tvh,2j03,2wh4,3kni,3uzf,2wh2,3uz8,4dhc,1vsp,3j11,2wdn,3zvp,4bye,3e1b,2wdl,2j01,2x9u,3sgf,4nvx,3e1d,3j19,3j0t,4kd9,2wrl,3f1h,2wro,2xtg,3tve,3uos,2xux,2b9p,4b8i,2x9s,3v2f,2wrj,2xqe,3f1f,3fik,2wrr,3j0y,2v47,2wdj,3bbo,2v49,4g5u,3cf5,2awb,3oh5,4b8g,4ioc,3r8s,3v23,3kno,3j7z,4ejb,3ohk,3v6x,3j5c,2j28,3oi3,4gar,4g5l,2wwq,3j37,4g5n,3uzn,4io9,4ejc,3uzk,3izt,3v25,3ohz,3oas,3oi1,3oi5,4kbw,4gau,3uyg,3huz,3pyo,3oh7,4ioa,3i1t,4kj3,2vhm,2vhn,3zne,3zn9,2zjp,3ohj,2qoz,2b66,3fin,3bbx,3orb,3i8f,3uz9,3j12,1vor,3kiw,2qp1,2gya,2i2t,1vs6,2hgq,3i9e,4g5w,3df2,3ofq,3d5b,3uxr,2b9n,2hgu,3i1n,3df4,3uxq,2z4l,1vsa,3kir,1vs8,1voy,3kiy,2hgj,2qov,2z4n,3kcr,3i8i,4dha,3i1p,1vt2,3ofr,2qbc,2aw4,3knm,3oat" "PF01783.18" "304" "2.40" "4rb6.5_5-60.4rb6.pdb1.pdb"
"2xqc" "Y1_Tnp" "dna" "Transposase IS200 like" "2xm3,2vju,4er8,2vjv,2vhg,2xqc,2xma,2vic,2vih,2xo6,2a6o" "PF01797.11" "11" "1.90" "2xqc.A_17-136.2xqc.pdb1.pdb"
"2ozb" "Nop" "rna" "Putative snoRNA binding domain" "3siu,3siv,3nvi,3id5,3pla,3nmu,3nvk,2ozb" "PF01798.13" "8" "2.60" "2ozb.B_186-333.2ozb.pdb1.pdb"
"2bu1" "Levi_coat" "rna" "Levivirus coat protein" "4ang,1u1y,1zdk,2bu1,1zse,2b2g,5msf,2iz8,2bs0,2c4y,2bs1,2b2d,1zdi,2c4z,1aq3,2iz9,2izm,2c4q,1zdh,2b2e,6msf,2bq5,7msf,1zdj,1aq4,2c51,2izn,2c50,2bny,4l8h" "PF01819.12" "30" "2.20" "2bu1.C_2-128.2bu1.pdb1.pdb"
"4ftb" "Peptidase_A6" "rna" "Peptidase A6 family" "2bbv,3lob,4fsj,1f8v,4ftb,4fts,4fte" "PF01829.11" "7" "2.70" "4ftb.C_55-363.4ftb.pdb1.pdb"
"1p7h" "TIG" "dna" "IPT/TIG domain" "1p7h,1owr,1pzu,1imh,2o93" "PF01833.19" "5" "2.60" "1p7h.N_581-675.1p7h.pdb2.pdb"
"2wiw" "Hjc" "dna" "Archaeal holliday junction resolvase (hjc)" "2wiw,2wj0,2wiz" "PF01870.13" "3" "1.80" "2wiw.B_7-99.2wiw.pdb1.pdb"
"3qjl" "Cas_Cas6" "rna" "CRISPR associated protein Cas6" "3pkm,3qjp,3qjl,3qjj" "PF01881.11" "4" "2.70" "3qjl.A_91-238.3qjl.pdb1.pdb"
"4mky" "DNA_primase_S" "dna" "Eukaryotic and archaeal DNA primase small subunit" "2r9l,4mky" "PF01896.14" "2" "2.40" "4mky.B_139-260.4mky.pdb1.pdb"
"1vq8" "Ribosomal_L37e" "hybrid" "Ribosomal protein L37e" "3cc2,4hub,3ccq,3cc7,2qex,2otj,3cma,4a1d,4a1b,4a18,1vq4,1vqn,3ccm,1yi2,3cpw,3ccs,3g4s,3ccv,3ccl,3g71,3g6e,3ccj,3cce,3ccr,3ccu,1vqo,1kc8,1k9m,1q7y,3i55,1k8a,3i56,1vqp,3cme,1q86,1qvf,1k73,4a19,3cxc,1vq7,1s1i,1m90,1s72,1w2b,1vqm,3o58,1vq8,1vqk,1vq6,1yj9,3cc4,1nji,2qa4,1kd1,1yhq,3cd6,2otl,1yjn,1jj2,1yij,1vql,1q82,1vq5,1m1k,1q81,1kqs,3o5h,1vq9,1qvg,1yit,1yjw,1n8r,3ow2,3j44" "PF01907.14" "74" "2.20" "1vq8.1_2-56.1vq8.pdb1.pdb"
"2q66" "NTP_transf_2" "rna" "Nucleotidyltransferase domain" "4ig8,3ova,4x4p,4nku,2dr8,1tfy,2dr7,2dr9,2drb,2dr5,2dra,2zh6,2zh7,1tfw,3ouy,3ovs,2dvi,2zhb,2zh4,2zh5,4rwo,4x4v,4x4s,4x4n,4x4t,4x4u,4x4r,4x4q,4x4o,1sz1,2zha,2zh8,2zh9,4rwn,4rwp,2zh1,2q66,3ovb,3ov7,2zh2,2zh3" "PF01909.18" "41" "1.80" "2q66.A_72-161.2q66.pdb1.pdb"
"2x7n" "eIF-6" "rna" "eIF-6 family" "2x7n" "PF01912.13" "1" "11.80" "2x7n.B_3-204.2x7n.pdb1.pdb"
"3wbm" "Alba" "rna" "Alba" "3wbm,3iab" "PF01918.16" "2" "2.00" "3wbm.A_10-74.3wbm.pdb1.pdb"
"1jid" "SRP19" "rna" "SRP19 protein" "1lng,1jid,2go5,1l9a,1mfq,4p3e,1ry1,3ktw,2v3c,3ktv,3ndb,2j37,4xco" "PF01922.12" "13" "1.80" "1jid.A_16-116.1jid.pdb1.pdb"
"3r9w" "MMR_HSR1" "rna" "50S ribosome-binding GTPase" "3j8g,3r9w,4csu" "PF01926.18" "3" "2.05" "3r9w.A_5-124.3r9w.pdb2.pdb"
"4ujq" "Ribosomal_L14e" "rna" "Ribosomal protein L14" "3j44,4uk5,4ukv,4ukq,4ula,4uk0,4uka,4ujg,4ujv,4ul5,4ujl,4ulk,4ul0,4ulf,4ujq,4ukl,4ukg,4ulq,4a19,3o5h,3o58,4a1b,4a1d,4a18" "PF01929.12" "24" "2.80" "4ujq.O_54-130.4ujq.pdb1.pdb"
"2bh2" "TRAM" "rna" "TRAM domain" "2bh2" "PF01938.15" "1" "2.15" "2bh2.A_15-67.2bh2.pdb1.pdb"
"4x9e" "HD" "rna" "HD domain" "3wfq,3wfs,4x9e,3wfr" "PF01966.17" "4" "3.10" "4x9e.A_66-183.4x9e.pdb1.pdb"
"2gjw" "tRNA_int_endo" "rna" "tRNA intron endonuclease, catalytic C-terminal domain" "2gjw" "PF01974.12" "1" "2.85" "2gjw.D_219-302.2gjw.pdb2.pdb"
"5bpd" "TrmB" "dna" "Sugar-specific transcriptional regulator TrmB" "5box,5bpd,5bpi" "PF01978.14" "3" "2.40" "5bpd.D_10-78.5bpd.pdb1.pdb"
"3zc0" "Translin" "rna" "Translin family" "3zc0" "PF01997.11" "1" "2.98" "3zc0.F_14-189.3zc0.pdb1.pdb"
"4z3c" "zf-CXXC" "dna" "CXXC zinc finger domain" "4hp3,4hp1,4nw3,4pzi,3qmi,3qmb,3pt6,3qmc,3qmg,3qmd,3pta,3qmh,4z3c" "PF02008.15" "13" "1.57" "4z3c.C_52-88.4z3c.pdb1.pdb"
"4qoz" "SAP" "rna" "SAP domain" "4qoz,4l8r,4hxh,1zbh" "PF02037.22" "4" "2.30" "4qoz.B_76-110.4qoz.pdb1.pdb"
"4g92" "CBFB_NFYA" "dna" "CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B" "4awl,4g92" "PF02045.10" "2" "1.80" "4g92.A_232-288.4g92.pdb1.pdb"
"4ld0" "RuvC" "dna" "Crossover junction endodeoxyribonuclease RuvC" "4ld0" "PF02075.12" "1" "3.75" "4ld0.A_3-154.4ld0.pdb1.pdb"
"1gtf" "TrpBP" "rna" "Tryptophan RNA-binding attenuator protein" "1utd,1gtf,1c9s,1utv,1gtn,1utf" "PF02081.10" "6" "1.75" "1gtf.T_5-74.1gtf.pdb2.pdb"
"4hf1" "Rrf2" "dna" "Transcriptional regulator" "4chu,4hf2,4hf1" "PF02082.15" "3" "2.22" "4hf1.B_1-83.4hf1.pdb1.pdb"
"2g1p" "MethyltransfD12" "dna" "D12 class N6 adenine-specific DNA methyltransferase" "1yf3,1q0t,1yfj,2g1p,1yfl,4rtq,4rtp,4rtj,4rtr,4rtl,4rtk,4rtn,4rto,4rts,4rtm" "PF02086.10" "15" "1.89" "2g1p.B_10-262.2g1p.pdb1.pdb"
"3l25" "Filo_VP35" "rna" "Filoviridae VP35" "3ks8,3l25,3l26,4lg2,4gha,4ghl" "PF02097.10" "6" "2.00" "3l25.E_218-340.3l25.pdb1.pdb"
"2r7r" "RdRP_4" "rna" "Viral RNA-directed RNA-polymerase" "2r7x,2r7w,2r7v,2r7s,2r7u,2r7t,2r7r" "PF02123.11" "7" "2.60" "2r7r.A_25-748.2r7r.pdb1.pdb"
"4z4d" "PAZ" "rna" "PAZ domain" "1si3,3o7v,1si2,4krf,4kre,4ngf,4ola,4olb,4kxt,4ei1,3o6e,3o3i,4f1n,4ei3,4f3t,4z4d,3mj0,4z4g,4z4f,4w5t,4w5n,4z4e,4w5r,4z4c,4w5q,4w5o,4z4i,4z4h" "PF02170.17" "28" "1.60" "4z4d.A_235-371.4z4d.pdb1.pdb"
"4z4d" "Piwi" "rna" "Piwi domain" "4z4i,4z4h,3hk2,3hxm,4ei1,3hvr,3f73,4n47,4olb,4kpy,4ncb,4w5o,4n41,4kxt,4ola,4kre,4nca,4krf,4z4f,4w5t,4w5q,4z4e,4w5n,4w5r,4z4c,4z4g,4f1n,3hjf,3hm9,3dlh,4f3t,4ei3,4n76,4z4d,2bgg,1ytu,2w42,3ho1" "PF02171.12" "38" "1.60" "4z4d.A_517-818.4z4d.pdb1.pdb"
"3fde" "SAD_SRA" "dna" "SAD/SRA domain" "3q0f,3q0d,3q0b,3q0c,3f8i,2zke,3f8j,3clz,2zkf,3fde,2zo2,2zkd,2zo0,2zo1,4qen,4pw7,4pw5,4pw6,4qeo,4qep" "PF02182.12" "20" "1.41" "3fde.B_420-590.3fde.pdb2.pdb"
"2itl" "T_Ag_DNA_bind" "dna" "Origin of replication binding protein" "3qfq,5d9i,4fb3,2nl8,2ntc,2itl,4fgn,4gdf" "PF02217.11" "8" "1.65" "2itl.B_136-229.2itl.pdb1.pdb"
"2c62" "PC4" "dna" "Transcriptional Coactivator p15 (PC4)" "4bhm,4usg,2c62" "PF02229.11" "3" "1.74" "2c62.A_62-117.2c62.pdb1.pdb"
"3uby" "Pur_DNA_glyco" "dna" "Methylpurine-DNA glycosylase (MPG)" "1f6o,3qi5,1f4r,1bnk,3uby,1ewn" "PF02245.11" "6" "2.00" "3uby.B_87-285.3uby.pdb1.pdb"
"1pgl" "Como_LCP" "rna" "Large coat protein" "1pgl" "PF02247.11" "1" "2.80" "1pgl.2_1-370.1pgl.pdb1.pdb"
"1dp7" "RFX_DNA_binding" "dna" "RFX DNA-binding domain" "1dp7" "PF02257.10" "1" "1.50" "1dp7.B_1-76.1dp7.pdb1.pdb"
"3wqy" "DHHA1" "rna" "DHHA1 domain" "3wqz,3wqy" "PF02272.14" "2" "3.30" "3wqy.A_834-899.3wqy.pdb1.pdb"
"1mus" "Dimer_Tnp_Tn5" "dna" "Transposase Tn5 dimerisation domain" "1muh,3ecp,1mus,1mm8,4dm0" "PF02281.11" "5" "1.90" "1mus.A_359-476.1mus.pdb1.pdb"
"1e8o" "SRP14" "rna" "Signal recognition particle 14kD protein" "4ue5,1e8o,1ry1,4uyk,4uyj" "PF02290.10" "5" "3.20" "1e8o.D_4-94.1e8o.pdb1.pdb"
"1xyi" "7kD_DNA_binding" "dna" "7kD DNA-binding domain" "1c8c,1bf4,1bnz,1azp,1ca5,1azq,1wvl,1wtp,1wd1,1wtw,1xyi,1wtv,1ca6,1wtq,1wd0,1wtx,1wtr,1wto" "PF02294.13" "18" "1.45" "1xyi.A_2-62.1xyi.pdb1.pdb"
"3eyi" "z-alpha" "dna" "Adenosine deaminase z-alpha domain" "3irq,2heo,4ka4,1j75,1qbj,2acj,1sfu,3irr,2gxb,3eyi,4kmf" "PF02295.12" "11" "1.45" "3eyi.B_105-161.3eyi.pdb1.pdb"
"2bpa" "Phage_F" "dna" "Capsid protein (F protein)" "2bpa,1rb8" "PF02305.12" "2" "3.00" "2bpa.1_184-424.2bpa.pdb1.pdb"
"4fcy" "HTH_Tnp_Mu_1" "dna" "Mu DNA-binding domain" "4fcy" "PF02316.11" "1" "3.71" "4fcy.B_88-143.4fcy.pdb1.pdb"
"1cf7" "E2F_TDP" "dna" "E2F/DP family winged-helix DNA-binding domain" "1cf7" "PF02319.15" "1" "2.60" "1cf7.A_17-82.1cf7.pdb1.pdb"
"2efw" "RTP" "dna" "Replication terminator protein" "2dpu,1f4k,2dpd,2efw" "PF02334.11" "4" "2.50" "2efw.F_8-122.2efw.pdb2.pdb"
"4mgu" "Denso_VP4" "dna" "Capsid protein VP4" "4mgu" "PF02336.10" "1" "3.50" "4mgu.A_23-415.4mgu.pdb1.pdb"
"4ldx" "B3" "dna" "B3 DNA binding domain" "4ldx" "PF02362.16" "1" "2.90" "4ldx.B_124-226.4ldx.pdb1.pdb"
"3swp" "NAM" "dna" "No apical meristem (NAM) protein" "3swp,3swm" "PF02365.10" "2" "4.11" "3swp.D_14-140.3swp.pdb1.pdb"
"2o4a" "CUT" "dna" "CUT domain" "2d5v,2o49,2o4a" "PF02376.10" "3" "1.75" "2o4a.A_370-448.2o4a.pdb1.pdb"
"4xqk" "N6_Mtase" "dna" "N-6 DNA Methylase" "2y7h,4xqk" "PF02384.11" "2" "2.70" "4xqk.A_840-1180.4xqk.pdb1.pdb"
"4ii9" "FemAB" "rna" "FemAB family" "4ii9" "PF02388.11" "1" "1.66" "4ii9.A_234-333.4ii9.pdb1.pdb"
"4ox9" "Methyltransf_4" "rna" "Putative methyltransferase " "4ox9" "PF02390.12" "1" "3.80" "4ox9.Y_7-107.4ox9.pdb1.pdb"
"1ser" "Seryl_tRNA_N" "rna" "Seryl-tRNA synthetase N-terminal domain" "1ser" "PF02403.17" "1" "2.90" "1ser.B_501-605.1ser.pdb1.pdb"
"4mdx" "PemK" "rna" "PemK-like protein" "4mdx" "PF02452.12" "1" "1.50" "4mdx.B_4-111.4mdx.pdb1.pdb"
"2zzm" "Met_10" "rna" "Met-10+ like-protein" "2zzn,2zzm" "PF02475.11" "2" "2.65" "2zzm.A_95-289.2zzm.pdb1.pdb"
"4ljr" "DNA_processg_A" "dna" "DNA recombination-mediator protein A" "4ljr" "PF02481.10" "1" "1.80" "4ljr.A_6-206.4ljr.pdb1.pdb"
"3v2c" "Ribosomal_S30AE" "rna" "Sigma 54 modulation protein / S30EA ribosomal protein" "3v2e,1voq,1vos,1vov,3v2c,3v28,1voz,1vox,3v26" "PF02482.14" "9" "2.70" "3v2c.Y_2-95.3v2c.pdb1.pdb"
"4g0a" "Rota_NS35" "rna" "Rotavirus non-structural protein 35" "4g0a" "PF02509.9" "1" "2.10" "4g0a.L_2-313.4g0a.pdb1.pdb"
"3mva" "mTERF" "dna" "mTERF" "3n6s,3mvb,3n7q,3mva" "PF02536.9" "4" "2.20" "3mva.O_73-396.3mva.pdb1.pdb"
"4xls" "CarD_CdnL_TRCF" "dna" "CarD-like/TRCF domain" "4xlr,4xls" "PF02559.11" "2" "4.01" "4xls.M_3-113.4xls.pdb1.pdb"
"4kr6" "ThiI" "rna" "Thiamine biosynthesis protein (ThiI)" "4kr6,4kr9,4kr7" "PF02568.9" "3" "2.85" "4kr6.B_172-369.4kr6.pdb1.pdb"
"4kji" "CsrA" "rna" "Global regulator protein family" "4kji" "PF02599.11" "1" "3.20" "4kji.A_24-66.4kji.pdb1.pdb"
"3kfu" "GatB_Yqey" "rna" "GatB domain" "4wj3,3kfu,3al0" "PF02637.13" "3" "3.00" "3kfu.F_319-603.3kfu.pdb1.pdb"
"3fmt" "DUF217" "dna" "Uncharacterized ACR, COG1753" "3fmt" "PF02697.9" "1" "2.98" "3fmt.B_1-93.3fmt.pdb1.pdb"
"4p0p" "ERCC4" "dna" "ERCC4 domain" "2bgw,4p0s,4p0r,4p0p,4p0q" "PF02732.10" "5" "2.80" "4p0p.A_273-415.4p0p.pdb1.pdb"
"1jey" "Ku" "dna" "Ku70/Ku80 beta-barrel domain" "1jey" "PF02735.11" "1" "2.50" "1jey.B_251-454.1jey.pdb1.pdb"
"3zdb" "5_3_exonuc_N" "dna" "5'-3' exonuclease, N-terminal resolvase-like domain" "2ihn,3zdd,3zdb" "PF02739.11" "3" "1.47" "3zdb.A_5-159.3zdb.pdb1.pdb"
"3k4x" "PCNA_C" "dna" "Proliferating cell nuclear antigen, C-terminal domain" "3k4x" "PF02747.10" "1" "2.98" "3k4x.A_127-269.3k4x.pdb1.pdb"
"4l5r" "HIN" "dna" "HIN-200/IF120x domain" "3rnu,4l5s,4jbk,4l5r,4lnq,4jbm,3rn5,3rn2,4qgu" "PF02760.10" "9" "1.87" "4l5r.C_58-224.4l5r.pdb1.pdb"
"1xjv" "POT1" "dna" "Telomeric single stranded DNA binding POT1/CDC13" "1ph5,1ph8,1kix,1ph2,1ph6,2i0q,1k8g,1xjv,1qzh,1ph1,1otc,1qzg,1phj,3kjp,3kjo,1ph9,1ph4,1ph7,1jb7,1ph3,1pa6" "PF02765.12" "21" "1.73" "1xjv.A_11-141.1xjv.pdb1.pdb"
"3bep" "DNA_pol3_beta_2" "dna" "DNA polymerase III beta subunit, central domain" "3bep" "PF02767.11" "1" "1.92" "3bep.B_129-243.3bep.pdb1.pdb"
"1jko" "HTH_7" "dna" "Helix-turn-helix domain of resolvase" "2gm4,2r0q,1gdt,1jj8,4m6f,1jko,1zr2,1hcr,1jj6,1ijw,1zr4,1jkq,1jkr,1jkp" "PF02796.10" "14" "2.24" "1jko.C_139-183.1jko.pdb1.pdb"
"1u8b" "Ada_Zn_binding" "dna" "Metal binding domain of Ada" "1u8b" "PF02805.11" "1" "2.10" "1u8b.A_10-75.1u8b.pdb1.pdb"
"1bg1" "STAT_bind" "dna" "STAT protein, DNA binding domain" "1bf5,4e68,1bg1" "PF02864.10" "3" "2.25" "1bg1.A_321-574.1bg1.pdb1.pdb"
"3zh2" "Ldh_1_C" "dna" "lactate/malate dehydrogenase, alpha/beta C-terminal domain" "3zh2" "PF02866.13" "1" "2.10" "3zh2.A_152-315.3zh2.pdb1.pdb"
"3ndb" "SRP54_N" "rna" "SRP54-type protein, helical bundle domain" "3ndb" "PF02881.14" "1" "3.00" "3ndb.B_5-82.3ndb.pdb1.pdb"
"1p7d" "Phage_int_SAM_1" "dna" "Phage integrase, N-terminal SAM-like domain" "1z1b,1p7d" "PF02899.12" "2" "2.95" "1p7d.B_80-158.1p7d.pdb2.pdb"
"1b3t" "EBV-NA1" "dna" "Epstein Barr virus nuclear antigen-1, DNA-binding domain" "1b3t" "PF02905.9" "1" "2.20" "1b3t.B_461-606.1b3t.pdb1.pdb"
"2fmt" "Formyl_trans_C" "rna" "Formyl transferase, C-terminal domain" "2fmt" "PF02911.13" "1" "2.80" "2fmt.A_206-304.2fmt.pdb1.pdb"
"2iy5" "Phe_tRNA-synt_N" "rna" "Aminoacyl tRNA synthetase class II, N-terminal domain" "2iy5,1eiy" "PF02912.13" "2" "3.10" "2iy5.A_15-82.2iy5.pdb1.pdb"
"4fcy" "DDE_2" "dna" "Bacteriophage Mu transposase" "4fcy" "PF02914.10" "1" "3.71" "4fcy.P_247-400.4fcy.pdb2.pdb"
"1k4t" "Topoisom_I_N" "dna" "Eukaryotic DNA topoisomerase I, DNA binding fragment" "1k4s,1a36,2b9s,1rr8,1rrj,1lpq,1a35,1tl8,1a31,1t8i,1seu,1r49,1k4t,1sc7,1ej9,1nh3" "PF02919.10" "16" "2.10" "1k4t.A_215-429.1k4t.pdb1.pdb"
"3bam" "BamHI" "dna" "Restriction endonuclease BamHI" "1bhm,1esg,3odh,3bam,2bam" "PF02923.10" "5" "1.80" "3bam.B_1-168.3bam.pdb1.pdb"
"4kr6" "THUMP" "rna" "THUMP domain" "4kr6,4kr7,4kr9" "PF02926.12" "3" "2.85" "4kr6.A_25-162.4kr6.pdb1.pdb"
"3kfu" "GatB_N" "rna" "GatB/GatE catalytic domain" "2d6f,3kfu,4wj3" "PF02934.10" "3" "3.00" "3kfu.I_3-283.3kfu.pdb1.pdb"
"1c0a" "GAD" "rna" "GAD domain" "1c0a,1efw" "PF02938.9" "2" "2.40" "1c0a.A_307-406.1c0a.pdb1.pdb"
"3gox" "Endonuclease_7" "dna" "Recombination endonuclease VII" "3gox,2qnf,2qnc,3fc3" "PF02945.10" "4" "1.50" "3gox.B_102-187.3gox.pdb1.pdb"
"4ihw" "HTH_8" "dna" "Bacterial regulatory protein, Fis family" "3jr9,3jrg,3jrd,3jrh,4ihv,4fth,4ihy,4ihx,4ihw,3jre,3jri,3jrc,3iv5,3jrf,3jra,3jrb" "PF02954.14" "16" "2.70" "4ihw.B_54-95.4ihw.pdb1.pdb"
"2bzf" "BAF" "dna" "Barrier to autointegration factor" "2bzf" "PF02961.9" "1" "2.87" "2bzf.A_2-88.2bzf.pdb1.pdb"
"1cl8" "EcoRI" "dna" "Restriction endonuclease EcoRI" "1cl8,2oxv,1qrh,1ckq,1qri,1eri,1qps" "PF02963.11" "7" "1.80" "1cl8.D_17-273.1cl8.pdb1.pdb"
"2aor" "MutH" "dna" "DNA mismatch repair enzyme MutH" "2aor,2aoq" "PF02976.10" "2" "2.00" "2aor.B_58-157.2aor.pdb1.pdb"
"1hq1" "SRP_SPB" "rna" "Signal peptide binding domain" "2j28,2go5,2xxa,1hq1,1dul,2pxl,2pxd,2j37,2pxu,1mfq,2pxb,3ndb,2pxk,2pxv,5aka,4xco,4ue5,4ue4,3lqx,2xkv,3zn8,2pxq,2pxe,1ry1,2pxt,1qzw,2pxp,2v3c,2pxf" "PF02978.14" "29" "1.52" "1hq1.A_9-79.1hq1.pdb1.pdb"
"1fok" "FokI_C" "dna" "Restriction endonuclease FokI, catalytic domain" "1fok" "PF02980.11" "1" "2.80" "1fok.A_146-290.1fok.pdb1.pdb"
"1fok" "FokI_N" "dna" "Restriction endonuclease FokI, recognition domain" "1fok" "PF02981.10" "1" "2.80" "1fok.A_4-143.1fok.pdb1.pdb"
"2fcc" "Pyr_excise" "dna" "Pyrimidine dimer DNA glycosylase" "2fcc,1vas" "PF03013.9" "2" "2.30" "2fcc.A_2-136.2fcc.pdb1.pdb"
"2der" "tRNA_Me_trans" "rna" "tRNA methyl transferase" "2det,2deu,2der" "PF03054.11" "3" "3.10" "2der.B_6-360.2der.pdb2.pdb"
"3qex" "DNA_pol_B_exo1" "dna" "DNA polymerase family B, exonuclease domain" "4fjj,3qno,4fjh,4khn,4du3,4fj5,4flt,4dtx,4i9q,4fjl,4fjn,4fjx,4flv,4fk4,4fj9,4ptf,4fjg,4e3s,4fj7,4du1,3nci,4fji,4dtr,2xhb,3cfr,4fk0,3k58,2p5g,3k57,3rmd,1noy,4fyd,4fj8,3k5m,3cfp,2ozs,3maq,2oyq,2dy4,3rwu,1q9y,1q9x,4khy,2p5o,4khs,4khq,4m3y,4m3t,4m3z,4khw,4m3r,4m41,4m45,4k8z,4m8o,4j2d,4ki4,4k8x,4fk2,4ki6,4m3u,3lzi,3iay,3l8b,2ozm,2dtu,4khu,3k5n,3ndk,3nae,4flx,3ngi,4flu,4m3x,3lds,3uiq,4m42,4dto,3nhg,3suo,3ne6,3k5l,4dtm,4q5v,4j2e,4qcl,3kd1,4j2b,3kd5,3tae,3spz,3sjj,3si6,3rma,3tab,4fm0,3cq8,3spy,3tag,2vwj,4fly,3sun,3qex,3qes,3sq0,3k59,3qnn,3scx,4dtj,3suq,3snn,3qep,4fm2,3qer,1clq,3sq2,4fjk,4j2a,3s9h,3rmb,3rmc,3qet,4dts,3qev,1ig9,4fjm,3qei,3qew,4dtp,3sq4,4flz,4fm1,4flw,4dtu,3sq1,3taf,3lzj,3sup,4dtn" "PF03104.14" "139" "1.73" "3qex.A_42-293.3qex.pdb1.pdb"
"3n4m" "RNA_pol_A_CTD" "dna" "Bacterial RNA polymerase, alpha chain C terminal domain" "3iyd,3n4m,1lb2,3n97" "PF03118.10" "4" "2.99" "3n4m.H_250-309.3n4m.pdb1.pdb"
"4glx" "DNA_ligase_ZBD" "dna" "NAD-dependent DNA ligase C4 zinc finger domain" "2owo,4glx" "PF03119.11" "2" "1.90" "4glx.A_407-434.4glx.pdb1.pdb"
"4glx" "DNA_ligase_OB" "dna" "NAD-dependent DNA ligase OB-fold domain" "4glx,2owo" "PF03120.11" "2" "1.90" "4glx.A_320-401.4glx.pdb1.pdb"
"1h4s" "HGTP_anticodon" "rna" "Anticodon binding domain" "1kog,1h4q,1h4s,1qf6" "PF03129.15" "4" "2.85" "1h4s.B_289-384.1h4s.pdb1.pdb"
"2wt7" "bZIP_Maf" "dna" "bZIP Maf transcription factor" "4eot,1skn,4auw,2wty,2wt7,3a5t" "PF03131.12" "6" "2.30" "2wt7.B_214-302.2wt7.pdb1.pdb"
"1b23" "GTP_EFTU_D3" "rna" "Elongation factor Tu C-terminal domain" "1ob5,1b23,3avv,3fih,1ttt,2xqd,2wrq,2y14,3fic,1mj1,4cxh,1ob2,4cxg,3avy,2wrn,2y10,2y16,2y18,2y12,4abr,2y0y,2y0w,2y0u,3izv,3izw" "PF03143.12" "25" "2.60" "1b23.P_309-404.1b23.pdb1.pdb"
"3avx" "GTP_EFTU_D2" "rna" "Elongation factor Tu domain 2" "2xuy,4b8h,4b8f,4abr,3izw,3j18,4kd8,4kja,3izv,4d61,4qs2,4kj6,1ttt,3zvo,2xsy,1ob5,3fih,1b23,3sfs,4juw,3v11,2y0w,2y0u,2wrk,2wrn,1zo1,2y12,3uoq,2y18,2y0y,2y16,2y10,2wri,2xqd,3fic,2y14,2wrq,3j36,4btc,4cxg,4kiy,3j5n,4kdg,4kj4,4kbt,2om7,4kdj,1ob2,4qs0,4kbv,3j81,4cxh,4kcy,4cr1,3j5x,4kjc,4kda,4kd0,3avy,3avx" "PF03144.20" "60" "2.41" "3avx.A_509-578.3avx.pdb1.pdb"
"3tup" "FDX-ACB" "rna" "Ferredoxin-fold anticodon binding domain" "2iy5,3tup,1eiy" "PF03147.9" "3" "3.05" "3tup.A_322-414.3tup.pdb1.pdb"
"1nh2" "TFIIA" "dna" "Transcription factor IIA, alpha/beta subunit" "1rm1,1nvp,1nh2,1ytf" "PF03153.8" "4" "1.90" "1nh2.C_230-285.1nh2.pdb1.pdb"
"2y35" "XRN_N" "dna" "XRN 5'-3' exonuclease N-terminus" "2y35" "PF03159.13" "1" "3.20" "2y35.A_1-227.2y35.pdb1.pdb"
"3c0w" "LAGLIDADG_2" "dna" "LAGLIDADG DNA endonuclease family" "1r7m,3c0w,3ool,3oor,3c0x" "PF03161.8" "5" "2.20" "3c0w.A_33-209.3c0w.pdb1.pdb"
"1ozj" "MH1" "dna" "MH1 domain" "3qsv,3kmp,4zl3,4zl2,4zkg,1ozj,1mhd" "PF03165.11" "7" "2.40" "1ozj.B_31-131.1ozj.pdb1.pdb"
"4uqm" "UDG" "dna" "Uracil DNA glycosylase superfamily" "3ufj,1oe6,3uob,4yig,4z7z,4uqm,4xeg,2oxm,4qcb,2ddg,3uo7,1ssp,2dp6,1mtl,4jgc,1oe4,1oe5,2oyt,2ssp,4fnc,1mwi,1emh,2rba,2dem,4z47,1emj,1lau,4skn,1mwj,1q3f,4z7b,5cys,4z3a" "PF03167.14" "33" "1.35" "4uqm.A_68-229.4uqm.pdb1.pdb"
"2py5" "DNA_pol_B_2" "dna" "DNA polymerase type B, organellar and viral" "1xhz,2pzs,2pyj,2py5,1xi1,2pyl" "PF03175.8" "6" "1.60" "2py5.B_52-488.2py5.pdb2.pdb"
"2ykr" "DUF258" "rna" "Protein of unknown function, DUF258" "4a2i,2ykr" "PF03193.11" "2" "9.80" "2ykr.W_171-331.2ykr.pdb1.pdb"
"4ohy" "MobB" "rna" "Molybdopterin guanine dinucleotide synthesis protein B" "4ohy,4oi0,4oi1,4ohz" "PF03205.9" "4" "2.00" "4ohy.A_115-230.4ohy.pdb1.pdb"
"1r9f" "Tombus_P19" "rna" "Tombusvirus P19 core protein" "1rpu,1r9f,4kq0,4jnx" "PF03220.8" "4" "1.85" "1r9f.A_25-148.1r9f.pdb1.pdb"
"1hlv" "HTH_Tnp_Tc5" "dna" "Tc5 transposase DNA-binding domain" "1hlv" "PF03221.11" "1" "2.50" "1hlv.A_74-131.1hlv.pdb1.pdb"
"2wj8" "Pneumo_ncap" "rna" "Pneumovirus nucleocapsid protein" "2wj8,2yhp,2yhq,2yhm" "PF03246.8" "4" "3.29" "2wj8.C_2-378.2wj8.pdb2.pdb"
"2zi0" "Cucumo_2B" "rna" "Cucumovirus protein 2B" "3cz3,2zi0" "PF03263.8" "2" "2.82" "2zi0.A_7-63.2zi0.pdb1.pdb"
"4o6a" "Mab-21" "dna" "Mab-21 protein" "4k99,4k97,4k9b,4o6a,4kb6,4k98,4ley,4k96,4k9a,4lez" "PF03281.9" "10" "1.86" "4o6a.A_199-498.4o6a.pdb1.pdb"
"3er9" "Pox_polyA_pol" "rna" "Poxvirus poly(A) polymerase nucleotidyltransferase domain" "3er9,3er8,3erc" "PF03296.8" "3" "2.06" "3er9.B_109-279.3er9.pdb1.pdb"
"4ujp" "Ribosomal_S25" "rna" "S25 ribosomal protein" "2xzm,4kzx,4bpn,2xzn,4kzz,4ujk,3j81,4cxc,4ul6,1vx5,4bpo,4ukh,4ukz,4ulr,1vxz,4ujr,1vw9,4w23,4kzy,4uq4,4w28,1vx2,4bpp,4ule,4bpe,3o2z,3o30,4ukm,4ukw,1vwv,4ulg,3j80,4ukk,4ulb,4ujm,4ul1,4ulj,4d61,1vxw,4uku,4ul4,4ujh,4ukr,4ujf,4uk6,4ujw,4ulp,4ujz,4uk9,4ulm,4uk1,4uju,4ul9,4ukp,4uq5,5a2q,4ukf,4ujp,4d5l,3j7a,4ukb,4uk4,4uer,3jam" "PF03297.10" "64" "2.80" "4ujp.a_36-105.4ujp.pdb1.pdb"
"2ofi" "Adenine_glyco" "dna" "Methyladenine glycosylase" "2ofi" "PF03352.8" "1" "1.85" "2ofi.A_6-184.2ofi.pdb1.pdb"
"4gz1" "Exo_endo_phos" "dna" "Endonuclease/Exonuclease/phosphatase family" "1dew,4gz1,3ngo,4gz0,4b5m,2dnj,4f1h,4b5j,4b5i,4b5g,1dnk,4b5h,4iem,4gz2,4b5f,3g00,3g0r,4fpv,3g2d,2voa,3g2c,3ga6,3g3c,4puq,3g3y,3g38,3g4t,1de9,1de8" "PF03372.18" "29" "1.50" "4gz1.B_127-359.4gz1.pdb2.pdb"
"3v6t" "Avirulence" "dna" "Xanthomonas avirulence protein, Avr/PthA" "4oss,4osj,4ot3,4osm,4osz,4osi,4gjr,3ugm,3v6t,4gjp,2ypf,4osw,4osv,4osl,4ost,4ot0,4gg4,4osr,4oto,4osk,4osh,4osq,4cja" "PF03377.8" "23" "1.85" "3v6t.B_287-436.3v6t.pdb2.pdb"
"4ht4" "MobA_MobL" "dna" "MobA/MobL family" "4ht4" "PF03389.10" "1" "2.91" "4ht4.A_17-195.4ht4.pdb1.pdb"
"3avx" "RNA_replicase_B" "rna" "RNA replicase, beta-chain " "3avv,3avw,3vnv,3avt,3avu,3vnu,3avy,3avx,4fwt" "PF03431.8" "9" "2.41" "3avx.A_717-1264.3avx.pdb1.pdb"
"1tez" "FAD_binding_7" "dna" "FAD binding domain of DNA photolyase" "1tez,3cvu,2wb2,3cvv,3cvw,3cvy,2vtb,3cvx,2xrz,2wq6,2wq7" "PF03441.9" "11" "1.80" "1tez.A_208-472.1tez.pdb1.pdb"
"3f1e" "PCRF" "rna" "PCRF domain" "4kfk,3d5c,2wh1,3mr8,2wh3,3f1g,2x9t,3ms0,3f1e,4kfh,3d5a,2x9r" "PF03462.13" "12" "3.00" "3f1e.X_79-196.3f1e.pdb1.pdb"
"3j16" "eRF1_1" "rna" "eRF1 domain 1" "3j16,3j5y,4d5n,4d61" "PF03463.10" "4" "7.20" "3j16.A_1-136.3j16.pdb1.pdb"
"3j16" "eRF1_2" "rna" "eRF1 domain 2" "4d61,3j16" "PF03464.10" "2" "7.20" "3j16.A_141-274.3j16.pdb1.pdb"
"3j16" "eRF1_3" "rna" "eRF1 domain 3" "3j16,4d61" "PF03465.10" "2" "7.20" "3j16.A_277-376.3j16.pdb1.pdb"
"2iy5" "B3_4" "rna" "B3/4 domain" "2iy5" "PF03483.12" "1" "3.10" "2iy5.B_209-385.2iy5.pdb1.pdb"
"2zue" "Arg_tRNA_synt_N" "rna" "Arginyl tRNA synthetase N terminal domain" "2zuf,2zue,1f7v,1f7u" "PF03485.11" "4" "2.00" "2zue.A_4-90.2zue.pdb3.pdb"
"4ujr" "S10_plectin" "rna" "Plectin/S10 domain" "3jam,4bpe,4ukm,4bpn,4ule,4bpp,4ujm,4ulp,4ujw,4ujp,4ukw,4ukf,4uk4,4ulg,4ulj,4ujh,4ujz,4ukb,4ul1,4uk1,4uku,1vxw,4ukk,4ukr,4uju,4ul4,3j7a,4uk9,4d61,4ujf,4uq5,3j80,4d5l,4uk6,4ulm,4ulb,4ukp,1vwv,4ul9,5a2q,2xzm,2xzn,4uer,4kzz,1vw9,4ukh,3j81,4w28,4ukz,4bpo,1vxz,4w23,4uq4,4ujk,4ul6,4ujr,4cxc,4kzx,1vx2,1vx5,4kzy,4ulr" "PF03501.10" "62" "2.80" "4ujr.o_3-98.4ujr.pdb2.pdb"
"2qqp" "Peptidase_A21" "rna" "Peptidase family A21" "2qqp" "PF03566.8" "1" "3.80" "2qqp.F_557-623.2qqp.pdb1.pdb"
"4izz" "Peptidase_S48" "dna" "Peptidase family S48" "4j01,4j00,4izz,4hri,4k1m" "PF03574.10" "5" "2.50" "4izz.A_54-202.4izz.pdb1.pdb"
"3oin" "EMG1" "rna" "EMG1/NEP1 methyltransferase" "3oin,3oij" "PF03587.9" "2" "1.90" "3oin.B_43-246.3oin.pdb1.pdb"
"1odh" "GCM" "dna" "GCM motif protein" "1odh" "PF03615.10" "1" "2.85" "1odh.A_29-169.1odh.pdb1.pdb"
"4rkg" "TCR" "dna" "Tesmin/TSO1-like CXC domain, cysteine-rich domain" "4rkg" "PF03638.10" "1" "2.50" "4rkg.A_523-566.4rkg.pdb1.pdb"
"4rb5" "Ribosomal_S5_C" "rna" "Ribosomal protein S5, C-terminal domain" "4kwz,4qs2,4waq,4tol,4tp8,4uju,4ujz,1vvr,1vvz,4ujw,4ujp,4uk1,4uk9,4ul9,4ulm,4pe9,4tpe,4rbd,4ukb,4qjt,4ukp,4yhh,1vxi,4ulp,1vvt,4ji3,4qd0,4ukr,4ul4,4ukw,4uk6,4wus,4rbf,4w2a,4ton,4uku,1vvn,1vvv,1vvp,4rbh,4aqy,4ox9,1vx8,1vxp,4tpa,4tp6,3j7a,4nvy,4tp0,4ujm,5aj3,4ukf,4ulg,4qcu,3j81,1vvl,4ujf,4ulj,4tow,4uk4,4tp4,4qcs,4ulb,1vxk,4ukk,4d61,4ujh,4qcm,4d5l,4uq5,3j80,1vxw,1vwv,4qcw,1vxm,4rbb,4rbj,4wt8,4wao,1vy0,5a2q,4ul1,4uer,2xuy,3huy,3v26,3v22,3uz4,4eja,4k0l,3v28,4kja,4g5k,2v48,4dv2,3t1y,4g5v,4gaq,4dv6,4dr6,4dr5,4duz,3uzl,4dr4,4kd8,4dr7,3uyf,4gd2,3t1h,2avy,4abr,3j5j,3izw,4b8f,4dv0,3i1s,3i1q,4gas,3o2z,3o30,4dr3,3knn,4b8h,3oar,3j20,4dv5,4dv1,4kfk,3uzm,4dr1,3zvo,4bpn,4kj6,3j43,3j0x,4ule,4ej9,3v2c,3j10,3v24,3j18,2y12,2wdm,3i9b,3j0u,2y0w,2ykr,2wdk,3i1z,2x9r,2y0u,3pyn,3ofy,3ofx,3or9,2gy9,4dv3,1ibk,1j5e,4gd1,1pnx,3pyu,2y18,2vho,2aw7,2uua,2b9o,2wdg,3f1g,3ofb,2hgp,3uxt,4dv7,2vqe,3zn7,1fjg,3d5a,2uuc,4ukm,4bpe,3pyq,2y0y,3i21,1hr0,2y14,3oaq,3knl,4dv4,1n36,3kiu,1s1h,2b64,2f4v,3kix,3oge,2y10,1hnw,2i2u,2hgi,3oi4,3pys,2y16,3uoq,3i1o,2uub,3j36,2wh3,3ohc,4b3m,3i9d,1hnz,3i1m,3ofa,3i8h,4ji6,3ms0,2b9m,2uu9,1fka,4g5t,1xmo,2x9t,3ohd,1n34,2wh1,3d5c,3ogy,3kiq,2ow8,2hhh,3znd,2vqf,3mr8,4g5m,3ohy,1pns,4lf4,3oi2,3i8g,2j02,2wwl,2zm6,2i2p,1i94,2j00,3oto,2gyb,4duy,1ibm,1ibl,1xnr,2vhp,2e5l,3ofp,3oi0,2v46,3ora,2hgr,1xnq,3ofo,1n33,4kx1,4b3r,4rb7,4ji7,4qcq,4juw,4lfb,4kdg,3j4z,4ulr,2uxb,4l6k,4a2i,1vx5,4ji4,3j5b,4cxc,4kd0,3j55,3j00,3j59,4lfc,4bpo,4kzx,4cr1,3j5t,4kvb,4lf5,4b3t,4kzz,4ujk,4gkj,1vxz,4jya,4lf7,1vw9,3j57,4rb5,4ul6,4qs0,3j4y,3j4v,3v6u,4byd,3j5h,4lfa,4qcy,4khp,4nw0,1vvx,4w2c,1vy2,4l6m,3j5d,4kj0,4ji2,4kiy,4ujr,4nxm,4adv,4tou,2xfz,4jv5,4nvw,4lf9,4ji1,4kj8,4kda,4kbt,4kj4,4lf8,4rb9,3j5f,3j4w,4pea,4b3s,3j5n,4kzy,3j6v,1vx2,4tp2,4qco,1vxs,1hnx,4w28,4ji0,4kbv,4w23,4kdj,4ji8,4kcy,4ukh,4kj2,4tpc,3v6v,4btc,4uq4,4kjc,4byb,4ji5,4ukz,4kfh,3tvg,2z4m,2uxd,3huw,3j53,3fic,3kis,3jam,2wdh,2xg1,3e1c,3sfs,3knh,3j0z,4bpp,2xqd,3e1a,3knj,2z4k,4gkk,2wri,4dr2,3jyv,3izv,3df1,1yl4,2xzn,3uzg,3v2e,4k0p,3uzi,1xmq,3uz3,4dh9,4lf6,2wrn,2xsy,2qbj,3df3,2qan,2qp0,4nvu,1vov,3fih,1vox,2xzm,3uz6,1voq,4dhb,3tvf,3uz7,2uxc,2qbf,1n32,4nxn,2qbd,2qbh,2qoy,3bbn,2qnh,2qal,2wrk,3uxs,1vos,3j5x,3j13,3f1e,3j0v,2qow,3kc4,2wrq,4k0k,2qou,3uyd,2qbb,1vs5,1voz,2qb9,1vs7" "PF03719.10" "442" "2.40" "4rb5.E_80-152.4rb5.pdb1.pdb"
"2jea" "RNase_PH_C" "rna" "3' exoribonuclease family, domain 2" "3m7n,2jea,4ifd" "PF03725.10" "3" "2.33" "2jea.J_159-224.2jea.pdb1.pdb"
"1jey" "Ku_C" "dna" "Ku70/Ku80 C-terminal arm" "1jey" "PF03730.9" "1" "2.50" "1jey.B_473-545.1jey.pdb1.pdb"
"1jey" "Ku_N" "dna" "Ku70/Ku80 N-terminal alpha/beta domain" "1jey" "PF03731.10" "1" "2.50" "1jey.B_9-244.1jey.pdb1.pdb"
"4kj0" "EFG_IV" "rna" "Elongation factor G, domain IV" "2wrk,4kd8,4kja,4b8h,2xuy,4b8f,4kj6,2xsy,3j36,2wri,4qs2,4kj2,4qs0,4kj4,4kda,4kjc,4kiy,4kj8,3j5n,4kcy,4kbt,4kdg,4kbv,4btc,4kdj,4kd0,4cr1,3j5x,4kj0" "PF03764.13" "29" "2.90" "4kj0.V_486-609.4kj0.pdb1.pdb"
"3x1l" "RAMPs" "hybrid" "RAMP superfamily" "3x1l" "PF03787.10" "1" "2.10" "3x1l.D_13-342.3x1l.pdb1.pdb"
"4esv" "DnaB_C" "dna" "DnaB-like helicase C terminal domain" "4esv,2vye" "PF03796.10" "2" "3.20" "4esv.E_185-441.4esv.pdb1.pdb"
"4nku" "PAP_assoc" "rna" "Cid1 family poly A polymerase" "4nku" "PF03828.14" "1" "1.94" "4nku.A_267-336.4nku.pdb1.pdb"
"3hax" "PolC_DP2" "rna" "DNA polymerase II large subunit DP2" "3hjw,3lwq,3hax,3lwp,3lwv,3hay,3lwr,2hvy,3lwo" "PF03833.8" "9" "2.11" "3hax.C_3-44.3hax.pdb1.pdb"
"2qsh" "Rad4" "dna" "Rad4 transglutaminase-like domain" "2qsh,2qsg,4yir" "PF03835.10" "3" "2.81" "2qsh.A_284-426.2qsh.pdb1.pdb"
"3w1k" "SelA" "rna" "L-seryl-tRNA selenium transferase" "3w1k" "PF03841.8" "1" "7.50" "3w1k.E_72-435.3w1k.pdb1.pdb"
"4gle" "UvdE" "dna" "UV-endonuclease UvdE" "4gle" "PF03851.9" "1" "2.70" "4gle.A_3-259.4gle.pdb1.pdb"
"1cw0" "Vsr" "dna" "DNA mismatch endonuclease Vsr" "1cw0,1odg" "PF03852.10" "2" "2.30" "1cw0.A_2-76.1cw0.pdb1.pdb"
"1bdt" "Arc" "dna" "Arc-like DNA binding domain" "1bdt,1bdv,1par,3qoq" "PF03869.9" "4" "2.50" "1bdt.C_4-50.1bdt.pdb1.pdb"
"3m4o" "RNA_pol_Rpb5_N" "hybrid" "RNA polymerase Rpb5, N-terminal domain" "3m4o" "PF03871.9" "1" "3.57" "3m4o.E_3-101.3m4o.pdb1.pdb"
"3moj" "DbpA" "rna" "DbpA RNA binding domain " "3moj" "PF03880.10" "1" "2.90" "3moj.B_404-477.3moj.pdb1.pdb"
"3s4g" "TNV_CP" "rna" "Satellite tobacco necrosis virus coat protein" "3s4g" "PF03898.8" "1" "6.00" "3s4g.A_12-195.3s4g.pdb1.pdb"
"3coq" "Gal4_dimer" "dna" "Gal4-like dimerisation domain" "3coq,1d66" "PF03902.8" "2" "2.40" "3coq.B_50-96.3coq.pdb1.pdb"
"1j3e" "SeqA" "dna" "SeqA protein" "3fmt,1iu3,1j3e,1lrr" "PF03925.8" "4" "2.50" "1j3e.A_4-116.1j3e.pdb1.pdb"
"1flo" "Flp_N" "dna" "Recombinase Flp protein N-terminus" "1p4e,1flo,1m6x" "PF03930.9" "3" "2.65" "1flo.C_44-128.1flo.pdb1.pdb"
"4a1c" "Ribosomal_L23eN" "rna" "Ribosomal protein L23, N-terminal domain" "4a1e,4a1a,4a17,4a1c" "PF03939.8" "4" "3.52" "4a1c.R_30-58.4a1c.pdb1.pdb"
"1mms" "Ribosomal_L11_N" "rna" "Ribosomal protein L11, N-terminal domain" "3j58,2zjq,3j5g,3j3w,4kj7,3j3v,4kdk,3j7y,3j5e,4kdb,4kj1,3deg,3j52,3j8g,3j4x,3j5a,4kfl,3j5u,4too,3j5i,4kjb,3j56,4tox,3j51,4kfi,4qjs,3j0d,3ofr,3i1n,2gya,3ofq,2wh4,2wh2,2vhm,1vs8,1vor,3fin,2hgu,3i1p,2hgj,1vt2,1voy,3i8i,3j44,2i2t,2aw4,3orb,3kcr,3e1d,2wwq,3i1t,3j5l,2b9p,2b9n,2z4l,3j37,2qao,2z4n,2qba,2qp1,2qbk,2qbi,3izt,4gar,2qbg,3i1r,2qov,2qbe,3oas,2qbc,2qox,2qoz,4gau,3j16,1vs6,3r8s,3df2,3df4,3r8t,2qam,3j19,2awb,3j5c,4kj3,3j01,4tpd,4pec,4peb,4tp5,4tp7,4tpb,5aka,4wap,4tom,4v19,4tp1,4tp9,4tpf,4tov,4tp3,4war,3j0t,1yl3,2xtg,3j11,3j14,2hgq,2xux,3f1f,3e1b,3uos,3bbo,3sgf,3cf5,3fik,3j0y,3f1h,2x9u,3oat,3izu,2j28,3j54,3ofd,3j5w,1vow,1mms,1vou,3ofz,2wrj,3i20,2zjp,3j12,2i2v,2gyc,3j0w,2wrl,1vp0,2x9s,3og0,1s1i,3i22,3ofc" "PF03946.9" "142" "2.57" "1mms.A_8-66.1mms.pdb1.pdb"
"1vq8" "Ribosomal_L2_C" "hybrid" "Ribosomal Proteins L2, C-terminal domain" "2y11,1nji,2v49,4abs,2wrl,3kcr,3uzh,3uz1,4kbw,2wrj,2y0z,2y15,3cd6,3uye,2y19,3j12,4rbc,3kir,1s72,2y13,2wdj,2y17,2y0x,3hux,3knk,2x9s,3j0w,2wdi,2x9u,3j54,2y0v,3knm,2j03,2wh4,2wro,2v47,2wwq,2j01,3fin,3j5l,2wdn,2wh2,2hgj,2wrr,1vsa,2xqe,3uxq,2wdl,4kd9,4kfi,4rba,4l6l,4kdk,4kix,4nvz,4kj7,4k0m,3j7y,3j5w,4kj5,3j3v,3j5u,3j5e,3v6w,3j5k,2xg2,4uji,3j5a,4uk0,4uk5,4qjs,3j5i,4kjb,2zjq,3j5o,1vy3,3cc7,1vxl,4ulh,4ula,4kfl,3j52,3j56,3j3w,3cc2,1vvs,4qcx,1vw3,3j7z,4byc,4hub,4kiz,4ujq,4kj1,4kdh,4k0q,4ce4,4qd1,4ukv,3ccq,4tox,3j50,3j5g,3j58,4kd2,4too,4kbu,1vy1,4ukc,4kdb,4btd,1vvm,4kcz,4nw1,2xg0,4ukq,4qcn,4jux,4kj9,3j51,4nvv,4qcp,3kit,3uos,2vhn,1q7y,2xux,3kiw,2qov,2qp1,3j14,2xtg,3ccl,2qbc,2qam,2qbk,2j28,2qbi,3j0t,2vhm,3j5c,2qao,3zvp,2qoz,4b8i,3cc4,3j11,2qba,2qox,3oat,4nvx,2qbe,2qbg,1yjw,3j0y,4bye,3j4x,1vor,2z4l,1w2b,2hgu,3d5d,1qvf,2zjp,3izu,1vs6,3e1b,3fik,1vsp,3cf5,3sgf,3kni,2z4n,4csu,3bbx,3d5b,4g5w,3f1h,2hgq,1vou,1q86,1voy,2gya,3f1f,1q81,1vow,3tve,1yit,1q82,1yl3,1vp0,3bbo,1qvg,3ccm,2gyc,3kiy,3e1d,2qex,3i1p,3izt,1kqs,3i1n,1vqm,3i20,4gar,1vqp,1vql,2otl,1vqo,3i22,1vqn,2awb,2otj,3cme,2i2t,3ms1,2i2v,3cxc,3cma,1vt2,1yjn,1yj9,3huz,3mrz,4ioc,1yhq,1yi2,1yij,3kno,3i55,4g5n,3og0,1k9m,1kc8,3orb,3ow2,3pip,1kd1,3v2f,2zjr,3ofz,1k8a,4ejc,3j19,3ofc,3ofd,1jj2,3ofq,1k73,3ofr,4dha,4dhc,3i1r,3i9c,1vq8,4b8g,3i8i,1vq9,3i8f,4io9,3i56,1vq7,3i9e,2qa4,1m1k,1m90,3uzn,1vq4,1vq5,3zne,2aw4,1vq6,1vqk,3pyr,4g5l,3r8t,3o5h,2b9p,2b9n,2b66,3oas,3oi1,3ohz,4ioa,3uzk,3ohk,1vs8,3ohj,3o58,4ejb,3zn9,3pyo,3uz8,3uz2,3uxr,3pyt,3uz9,3tvh,3pyv,3v2d,3oi5,3v29,3oi3,3v6x,3r8s,3j37,4g5u,3oh7,3df4,3oh5,3df2,3uzf,4kj3,3j44,3uyg,4gau,1s1i,3v23,3v25,3i1t,3v27,4pec,1vvw,3ccv,1vxj,4ujs,4tp1,4wap,4uln,3pio,4uls,4tp7,4tpb,4qcz,4wwe,3g71,4ul2,4peb,4uks,4ukg,4ukx,4uy8,4uk2,5aka,4rbe,4tpf,4tp5,1vvu,4rb6,4ulk,4qs3,4ujx,3ccj,4qs1,4tp3,4ukl,4v19,3cpw,4uka,4ulc,4tom,4qct,4tov,4ujn,1vxn,4uk7,1vvo,4w2b,3cce,4ul5,4war,4ujl,4tp9,1vw0,3dll,4kx2,4ulq,4ulf,1vxt,4w2d,4l6j,4kx0,1vvy,4ukn,4rbg,4rbk,3g6e,3ccr,4u67,4qcv,4uki,4qcr,4tpd,4rb8,3ccu,4ul7,3j01,4rbi,1vvq,4ujg,4ujv,3g4s,1vx9,4wwt,1vxq,3ccs,4ul0,3j8g" "PF03947.13" "408" "2.20" "1vq8.A_88-221.1vq8.pdb1.pdb"
"3j8g" "Ribosomal_L9_C" "rna" "Ribosomal protein L9, C-terminal domain" "3j01,4csu,3kcr,2wwq,3izu,3j0w,3j12,3j5c,3izt,3j52,3j8g,3j4x,3j5a,3j5g,3j5e,3j5k,3j58,3j51,3j14,3j0t,3j0y,3j11" "PF03948.9" "22" "5.00" "3j8g.H_62-149.3j8g.pdb1.pdb"
"1qtq" "tRNA-synt_1c_C" "rna" "tRNA synthetases class I (E and Q), anti-codon binding domain" "1euq,1qrt,2re8,1qrs,1zjw,1gtr,1gts,1euy,1o0c,4jxx,4jyz,2rd2,1o0b,1qtq,1exd,1qru,4jxz" "PF03950.13" "17" "2.25" "1qtq.A_339-527.1qtq.pdb1.pdb"
"1xsd" "Penicillinase_R" "dna" "Penicillinase repressor" "1xsd,2d45,1sax" "PF03965.11" "3" "2.70" "1xsd.D_8-122.1xsd.pdb1.pdb"
"1fos" "PspA_IM30" "dna" "PspA/IM30 family" "1fos" "PF04012.7" "1" "3.05" "1fos.H_279-322.1fos.pdb2.pdb"
"3zvk" "Antitoxin-MazE" "dna" "Antidote-toxin recognition MazE" "3zvk" "PF04014.13" "1" "2.50" "3zvk.F_7-47.3zvk.pdb1.pdb"
"2go5" "SRP-alpha_N" "rna" "Signal recognition particle, alpha subunit, N-terminal" "2go5" "PF04086.8" "1" "7.40" "2go5.1_26-130.2go5.pdb1.pdb"
"3hax" "Nop10p" "rna" "Nucleolar RNA-binding protein, Nop10p family" "3lwr,3lwo,2hvy,3lwv,3hay,3hax,3lwp,3lwq,3hjw" "PF04135.7" "9" "2.11" "3hax.C_3-53.3hax.pdb1.pdb"
"4rcj" "YTH" "rna" "YT521-B-like domain" "4r3i,4u8t,4rcj" "PF04146.10" "3" "1.60" "4rcj.A_388-526.4rcj.pdb1.pdb"
"1nkp" "IncA" "dna" "IncA protein" "1nkp,1an2,1nlw" "PF04156.9" "3" "1.80" "1nkp.B_203-283.1nkp.pdb1.pdb"
"5amr" "Bunya_RdRp" "rna" "Bunyavirus RNA dependent RNA polymerase" "5amr,5amq" "PF04196.7" "2" "2.57" "5amr.A_596-1353.5amr.pdb1.pdb"
"1hlv" "CENP-B_N" "dna" "CENP-B N-terminal DNA-binding domain" "1hlv" "PF04218.8" "1" "2.50" "1hlv.A_2-56.1hlv.pdb1.pdb"
"1oup" "Endonuclease_1" "dna" "Endonuclease I" "2ivk,1oup" "PF04231.8" "2" "2.30" "1oup.A_22-228.1oup.pdb2.pdb"
"1w36" "Exonuc_V_gamma" "dna" "Exodeoxyribonuclease V, gamma subunit " "1w36" "PF04257.9" "1" "3.10" "1w36.C_1-840.1w36.pdb1.pdb"
"3j7y" "Tim44" "rna" "Tim44-like domain" "3j7y" "PF04280.10" "1" "3.40" "3j7y.d_118-266.3j7y.pdb1.pdb"
"4lln" "DUF445" "dna" "Protein of unknown function (DUF445)" "4lln" "PF04286.7" "1" "2.84" "4lln.C_6-139.4lln.pdb2.pdb"
"4ux5" "KilA-N" "dna" "KilA-N domain" "4ux5" "PF04383.8" "1" "2.40" "4ux5.A_30-109.4ux5.pdb1.pdb"
"3bs1" "LytTR" "dna" "LytTr DNA-binding domain" "3bs1" "PF04397.10" "1" "1.60" "3bs1.A_149-238.3bs1.pdb1.pdb"
"3wc2" "Thg1" "rna" "tRNAHis guanylyltransferase" "3wc2" "PF04446.7" "1" "3.64" "3wc2.A_5-137.3wc2.pdb1.pdb"
"2w36" "Endonuclease_5" "dna" "Endonuclease V" "2w35,4b20,2w36" "PF04493.9" "3" "2.10" "2w36.B_19-217.2w36.pdb1.pdb"
"4oin" "Sigma70_r3" "dna" "Sigma-70 region 3" "4ylo,4g7z,4oiq,4g7h,4g7o,4xln,4xlr,4yln,4xls,4q4z,4oio,4oip,4oin,4oir,4xlq,4ylp,3iyd" "PF04539.11" "17" "2.80" "4oin.F_266-345.4oin.pdb1.pdb"
"4lup" "Sigma70_r2" "dna" "Sigma-70 region 2 " "4yln,4gor,4g7z,3iyd,4ylo,4xls,4oin,4lup,4oio,4oir,4ki2,4oip,4oiq,4g7o,4g7h,4xln,4q5s,4xlr,4q4z,4ylp,3ugp,4xlp,4xlq,3ugo" "PF04542.9" "24" "1.20" "4lup.C_25-92.4lup.pdb2.pdb"
"1ais" "Sigma70_r4" "dna" "Sigma-70, region 4" "1ais,4ylp,1d3u,4ylo,1l9z,4xls,1ku7,3n97,3iyd,4yln,4xlq,4xlp,4xln,4xlr,1rio" "PF04545.11" "15" "2.10" "1ais.B_1254-1294.1ais.pdb1.pdb"
"2o5i" "RNA_pol_Rpb2_7" "hybrid" "RNA polymerase Rpb2, domain 7" "4a3b,3aoh,3gto,1sfo,2o5i,3hox,4ylp,3aoi,2vum,2e2j,2r93,2e2h,3m4o,3gtj,2e2i,2nvx,3gtk,2yu9,3gtl,4ylo,1i6h,2ppb,2nvz,3s17,3gtm,3gtq,4a3k,3how,2nvt,3po3,1r9t,3s14,3rzd,3iyd,3m3y,1r9s,3gtg,3s2h,3gtp,5c44,4a3m,4a3d,3s1q,4g7o,4g7z,3s2d,3s1n,3s1m,4by7,4q4z,3s16,4xlr,3s15,4a3e,2o5j,4a3l,4a3c,4a3j,4bbs,3i4n,2r7z,4oiq,4gzz,4gzy,4wqs,4g7h,4a3f,4v1n,2nvq,5c4a,4x67,5c4x,5c3e,4x6a,4yln,4y7n,4q5s,4a3g,4by1,4oip,4oio,4oir,3h3v,4a3i,4oin,4v1m,5c4j,4v1o" "PF04560.15" "88" "2.50" "2o5i.M_1028-1104.2o5i.pdb2.pdb"
"4oin" "RNA_pol_Rpb2_2" "dna" "RNA polymerase Rpb2, domain 2" "5c4j,4yln,4q4z,4g7z,4a3e,4g7o,4ylp,3iyd,4ylo,4oiq,3po2,4oio,4oip,4oir,4oin,4g7h,4a93,4q5s,4xlr,4xln,5c4x" "PF04561.9" "21" "2.80" "4oin.C_142-334.4oin.pdb1.pdb"
"2o5i" "RNA_pol_Rpb2_1" "hybrid" "RNA polymerase beta subunit" "4yln,4ylp,4x67,4q5s,5c4x,4xln,5c4a,4xlr,4y7n,4y52,2vum,3m4o,3gtj,2o5i,5c44,3gtk,5c4j,4xlq,4g7o,2o5j,2ja7,3s1q,4ylo,4g7z,4a3e,4g7h,4a93,4by1,4gzy,2r7z,3i4n,4oiq,4gzz,2e2i,2b63,2ppb,2e2h,3po2,2nvz,4wqs,3gtg,3iyd,4oip,4q4z,5c3e,4oin,4oir,4by7,4oio" "PF04563.10" "49" "2.50" "2o5i.C_17-389.2o5i.pdb1.pdb"
"2o5i" "RNA_pol_Rpb2_3" "hybrid" "RNA polymerase Rpb2, domain 3" "3h3v,4oir,4oin,4b1p,4oio,4by7,4oip,5c4j,4v1o,4q5s,2ja8,4yln,4xlr,4xln,5c4a,5c4x,2nvq,4y7n,4s20,4wqs,5c3e,3hoz,1sfo,1y1w,4ylp,2vum,2yu9,2nvx,3m4o,1y77,3gtj,3hoy,2o5i,2e2j,2e2h,3gtk,2e2i,3aoh,4a3b,3aoi,3gto,3gtl,3hox,3gtq,2nvz,1r9t,2ppb,3how,4oiq,3s14,4ylo,2b63,3po2,5c44,3gtg,1i6h,1r9s,3gtp,3gtm,2nvt,4g7o,4a3m,4bxx,4q4z,2o5j,4g7z,3s1m,3s1n,4by1,4gzz,4v1n,4a93,3i4n,4g7h,3rzo,4gzy,3i4m" "PF04565.11" "77" "2.50" "2o5i.C_393-462.2o5i.pdb1.pdb"
"3l2p" "DNA_ligase_A_N" "dna" "DNA ligase N terminus" "1x9n,3l2p" "PF04675.9" "2" "3.00" "3l2p.A_174-348.3l2p.pdb1.pdb"
"1x9n" "DNA_ligase_A_C" "dna" "ATP dependent DNA ligase C terminal region " "3l2p,1x9n" "PF04679.10" "2" "3.00" "1x9n.A_771-882.1x9n.pdb1.pdb"
"2bpa" "Microvir_J" "dna" "Microvirus J protein" "1rb8,2bpa" "PF04726.8" "2" "3.00" "2bpa.3_2-37.2bpa.pdb1.pdb"
"4ujp" "Ribosomal_S30" "rna" "Ribosomal protein S30" "3j0p,3j0o,3j0q,4kzx,4bpo,3j0l,4bpp,4bpn,4ule,3j16,2xzn,4bpe,1vxz,4ujk,4ukz,1vw9,4uq4,4kzy,3j81,1vx5,4w28,4cxc,4w23,1vx2,2xzm,3jam,4kzz,4d5l,4uq5,4ukp,4ujz,4d61,1vxw,4ul4,1vwv,4ukk,4ujp,3j80,3j7a,4ujf,4uju,4uku,4uk9,4ulp,4ul9,4ulj,5a2q,4uk4,4ukf,4uer" "PF04758.9" "50" "2.80" "4ujp.f_3-60.4ujp.pdb1.pdb"
"1ic8" "HNF-1_N" "dna" "Hepatocyte nuclear factor 1 (HNF-1), N terminus" "2h8r,1ic8" "PF04814.8" "2" "2.60" "1ic8.A_87-176.1ic8.pdb1.pdb"
"2d7d" "ResIII" "dna" "Type III restriction enzyme, res subunit" "2d7d,2nmv,2fdc,4zcf,4gl2,3v4r" "PF04851.10" "6" "2.10" "2d7d.A_10-132.2d7d.pdb1.pdb"
"2a1r" "CAF1" "rna" "CAF1 family ribonuclease" "2a1r" "PF04857.15" "1" "2.60" "2a1r.B_1-392.2a1r.pdb1.pdb"
"2q66" "PAP_RNA-bind" "rna" "Poly(A) polymerase predicted RNA binding domain" "2q66" "PF04926.10" "1" "1.80" "2q66.A_353-529.2q66.pdb1.pdb"
"2q66" "PAP_central" "rna" "Poly(A) polymerase central domain" "2q66" "PF04928.12" "1" "1.80" "2q66.A_6-352.2q66.pdb1.pdb"
"3v24" "RMF" "rna" "Ribosome modulation factor" "3v22,3v24" "PF04957.7" "2" "3.00" "3v24.V_3-55.3v24.pdb1.pdb"
"2o5i" "RNA_pol_Rpb1_1" "hybrid" "RNA polymerase Rpb1, domain 1" "4by1,4oiq,4oin,4by7,4a3f,5c44,4bxx,4oip,4oir,4a3i,4oio,3h3v,4a3g,4y52,5c4x,4xls,2nvq,4s20,4wqs,5c4a,4y7n,2ja8,2ja5,4q5s,3hou,2ja7,2ppb,4ylo,3iyd,2e2h,5c3e,3aoi,2o5i,4a3k,4xlp,4xlq,5c4j,4v1m,4a3c,2vum,1y1w,4bbs,3s2h,1sfo,3i4n,4a3j,4a3d,4a93,4a3m,4g7z,4a3e,1y77,4a3l,4a3b,3hoy,4gzz,2nvt,3m3y,3po2,4gzy,3po3,3hoz,4g7o,3hov,3m4o,3i4m,2nvx,2nvz,2ja6,2yu9,3gtg,3gtj,3hox,2r7z,3rzd,3rzo,3s1m,3s2d,3s1r,3gtl,1i6h,3gtk,4g7h,3s17,3s16,3gtq,3gtp,3gto,3gtm,3s14,3s15,4q4z,2r92,2r93,2b63,1r9t,1r9s,2o5j,4yln,3how,2e2i,2e2j" "PF04997.7" "102" "2.50" "2o5i.D_2-618.2o5i.pdb1.pdb"
"2o5i" "RNA_pol_Rpb1_5" "hybrid" "RNA polymerase Rpb1, domain 5" "3gtg,4yln,4a3c,3gtk,2o5j,4a3l,3hov,3s1m,4a3j,3gtm,1i6h,1sfo,3s1n,3gtj,3gtp,2ja6,2nvt,3s1q,4a3e,3rzd,1y1w,3hox,4ylp,3s1r,4a3d,2e2i,4q4z,3hoy,3s15,4a3m,3hou,4g7z,3hoz,3s16,3s2d,1r9s,3iyd,2ppb,3po3,4wqs,3s14,3po2,3s2h,3gtq,3s17,2nvx,3how,5c44,4ylo,2e2h,2ja7,2b63,1y77,4g7o,2nvz,1r9t,3h3v,4oir,4a3g,4oip,4a3i,4by7,4bxx,4oin,4b1p,4oio,4a3f,4xlr,2nvq,4s20,4q5s,4xln,2ja5,5c4a,2ja8,5c4x,4v1n,4gzz,4oiq,4by1,3rzo,4g7h,3m3y,4a93,4gzy,3i4n,3i4m,2r7z,3m4o,4bbs,2vum,2yu9,2r92,2r93,4a3k,2e2j,4a3b,3gto,3aoh,3gtl,5c3e,2o5i,3aoi,4v1m,4v1o,5c4j" "PF04998.12" "106" "2.50" "2o5i.N_1064-1437.2o5i.pdb2.pdb"
"4bxx" "RNA_pol_Rpb1_4" "hybrid" "RNA polymerase Rpb1, domain 4" "4bxx,3gtk,3po2" "PF05000.12" "3" "3.28" "4bxx.A_693-800.4bxx.pdb1.pdb"
"3kiq" "Plasmid_stabil" "rna" "Plasmid stabilisation system protein" "3kis,3kiu,3kix,3kiq" "PF05016.9" "4" "3.30" "3kiq.y_5-85.3kiq.pdb1.pdb"
"1xpx" "HPD" "dna" "Homeo-prospero domain" "1xpx" "PF05044.7" "1" "2.80" "1xpx.A_1246-1401.1xpx.pdb1.pdb"
"3j7y" "Img2" "rna" "Mitochondrial large subunit ribosomal protein (Img2)" "3j7y,4ce4" "PF05046.9" "2" "3.40" "3j7y.g_81-166.3j7y.pdb1.pdb"
"3j7y" "L51_S25_CI-B8" "rna" "Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain " "3j7y,5aj3" "PF05047.11" "2" "3.40" "3j7y.b_43-96.3j7y.pdb1.pdb"
"3jam" "Ribosomal_L41" "rna" "Ribosomal protein L41" "3j44,5a2q,3j80,3jam,3j81" "PF05162.8" "5" "3.46" "3jam.h_1-25.3jam.pdb1.pdb"
"5a3d" "XPA_C" "dna" "XPA protein C-terminus" "5a3d" "PF05181.7" "1" "1.80" "5a3d.A_222-273.5a3d.pdb1.pdb"
"1wb9" "MutS_IV" "dna" "MutS family domain IV" "2o8f,2wtu,1nne,1e3m,1wbd,2o8b,3k0s,1oh6,1fw6,1wb9,1oh8,2o8c,1oh7,1w7a,1ewq,3thy,1ng9,2o8d,1oh5,2o8e,1wbb,3thx,3thw,3zlj,3thz" "PF05190.13" "25" "2.10" "1wb9.B_428-519.1wb9.pdb1.pdb"
"1wb9" "MutS_III" "dna" "MutS domain III" "3thz,3thx,3zlj,3thw,1e3m,3thy,1wbb,3k0s,2o8e,1oh5,1wbd,1fw6,2o8f,1oh6,2o8b,1nne,2wtu,1wb9,2o8d,1ng9,1ewq,1w7a,2o8c,1oh8,1oh7" "PF05192.13" "25" "2.10" "1wb9.B_271-560.1wb9.pdb1.pdb"
"1flo" "Flp_C" "dna" "Recombinase Flp protein" "1p4e,1flo,1m6x" "PF05202.7" "3" "2.65" "1flo.D_128-380.1flo.pdb1.pdb"
"1lwt" "Hom_end_hint" "dna" "Hom_end-associated Hint" "1lws,1lwt" "PF05203.11" "2" "3.20" "1lwt.A_1-454.1lwt.pdb1.pdb"
"1lwt" "Hom_end" "dna" "Homing endonuclease" "1lwt,1lws" "PF05204.9" "2" "3.20" "1lwt.A_195-296.1lwt.pdb1.pdb"
"1mnn" "NDT80_PhoG" "dna" "NDT80 / PhoG like DNA-binding family" "2evj,2euw,2euv,2eux,2evf,1mnn,2euz,2evh,2evi,2evg,2etw" "PF05224.7" "11" "1.40" "1mnn.A_105-334.1mnn.pdb1.pdb"
"3on0" "Tra_M" "dna" "TraM protein, DNA-binding" "4qpq,3on0" "PF05261.6" "2" "2.87" "3on0.H_2-119.3on0.pdb1.pdb"
"1zs4" "Phage_CII" "dna" "Bacteriophage CII protein" "1zs4" "PF05269.6" "1" "1.70" "1zs4.D_7-79.1zs4.pdb1.pdb"
"2pfj" "Phage_endo_I" "dna" "Phage endonuclease I" "2pfj" "PF05367.6" "1" "3.10" "2pfj.A_17-145.2pfj.pdb1.pdb"
"2voo" "La" "rna" "La domain" "1zh5,2vop,2vod,2voo,1yty,4wkr,2von" "PF05383.12" "7" "1.80" "2voo.A_17-75.2voo.pdb1.pdb"
"4dqy" "WGR" "dna" "WGR domain" "4dqy,4opx,4oqb,4oqa" "PF05406.10" "4" "3.25" "4dqy.F_549-633.4dqy.pdb2.pdb"
"2fio" "Phi-29_GP4" "dna" "Phi-29-like late genes activator (early protein GP4)" "2fio" "PF05464.6" "1" "2.70" "2fio.A_2-124.2fio.pdb1.pdb"
"4uer" "eIF-3c_N" "rna" "Eukaryotic translation initiation factor 3 subunit 8 N-terminus" "4uer" "PF05470.7" "1" "6.47" "4uer.c_251-640.4uer.pdb1.pdb"
"2i06" "Ter" "dna" "DNA replication terminus site-binding protein (Ter protein)" "4xr1,4xr3,1ecr,2i06,2i05,2ewj,4xr2,4xr0" "PF05472.6" "8" "2.20" "2i06.A_8-307.2i06.pdb1.pdb"
"3kde" "THAP" "dna" "THAP domain" "3kde" "PF05485.7" "1" "1.74" "3kde.C_1-76.3kde.pdb1.pdb"
"1e8o" "SRP9-21" "rna" "Signal recognition particle 9 kDa protein (SRP9)" "4ue5,1e8o,1ry1,4uyk" "PF05486.7" "4" "3.20" "1e8o.C_5-74.1e8o.pdb1.pdb"
"1a73" "zf-His_Me_endon" "dna" "Zinc-binding loop region of homing endonuclease" "2o6m,1evw,1ipp,1cz0,1a73,1a74,1cyq" "PF05551.6" "7" "1.80" "1a73.B_65-150.1a73.pdb1.pdb"
"2drp" "zf-Di19" "dna" "Drought induced 19 protein (Di19), zinc-binding" "2drp" "PF05605.7" "1" "2.80" "2drp.D_109-165.2drp.pdb2.pdb"
"2d3o" "Trigger_N" "rna" "Bacterial trigger factor protein (TF)" "2d3o,1w2b" "PF05697.8" "2" "3.35" "2d3o.1_10-109.2d3o.pdb1.pdb"
"1yvp" "TROVE" "rna" "TROVE domain" "2i91,1yvp" "PF05731.6" "2" "2.20" "1yvp.A_16-369.1yvp.pdb1.pdb"
"4h5p" "Tenui_N" "rna" "Tenuivirus/Phlebovirus nucleocapsid protein" "4h6g,4csf,4h6f,4h5o,4h5q,4h5p" "PF05733.6" "6" "2.15" "4h5p.A_3-223.4h5p.pdb2.pdb"
"2zue" "DALR_1" "rna" "DALR anticodon binding domain" "1f7u,2zue,1f7v,2zuf" "PF05746.10" "4" "2.00" "2zue.A_507-629.2zue.pdb3.pdb"
"3h0d" "CtsR" "dna" "Firmicute transcriptional repressor of class III stress genes (CtsR)" "3h0d" "PF05848.6" "1" "2.40" "3h0d.B_3-152.3h0d.pdb1.pdb"
"2h8c" "RusA" "dna" "Endodeoxyribonuclease RusA" "2h8c" "PF05866.6" "1" "3.10" "2h8c.C_8-117.2h8c.pdb2.pdb"
"3hl2" "SLA_LP_auto_ag" "rna" "Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)" "3hl2" "PF05889.8" "1" "2.81" "3hl2.C_61-459.3hl2.pdb1.pdb"
"2bh2" "tRNA_U5-meth_tr" "rna" "tRNA (Uracil-5-)-methyltransferase" "3bt7,2bh2" "PF05958.6" "2" "2.15" "2bh2.A_95-432.2bh2.pdb1.pdb"
"4esj" "DRP" "dna" "Dam-replacing family" "4esj,4kyw" "PF06044.7" "2" "2.05" "4esj.B_1-254.4esj.pdb2.pdb"
"1rff" "Tyr-DNA_phospho" "dna" "Tyrosyl-DNA phosphodiesterase" "1rff,1nop,1rg2,1rfi,1rgt,1rg1,1rgu,1rh0" "PF06087.7" "8" "1.70" "1rff.B_163-582.1rff.pdb2.pdb"
"4pjo" "zf-U1" "rna" "U1 zinc finger" "4pjo" "PF06220.7" "1" "3.30" "4pjo.l_2-38.4pjo.pdb2.pdb"
"3vea" "MatP" "dna" "Organiser of macrodomain of Terminus of chromosome" "4d8j,3veb,3vea" "PF06303.7" "3" "2.55" "3vea.D_14-161.3vea.pdb1.pdb"
"4qjt" "LepA_C" "rna" "GTP-binding protein LepA C-terminus" "3deg,4qjt" "PF06421.7" "2" "2.90" "4qjt.y_496-602.4qjt.pdb1.pdb"
"4gdf" "Polyoma_lg_T_C" "dna" "Polyomavirus large T antigen C-terminus" "4gdf" "PF06431.6" "1" "2.80" "4gdf.E_265-627.4gdf.pdb2.pdb"
"4yhw" "DUF1115" "rna" "Protein of unknown function (DUF1115)" "4yhw" "PF06544.7" "1" "3.25" "4yhw.B_339-467.4yhw.pdb2.pdb"
"3j46" "SecM" "rna" "Secretion monitor precursor protein (SecM)" "3j46" "PF06558.7" "1" "10.10" "3j46.n_32-100.3j46.pdb1.pdb"
"2c5r" "Phi-29_GP16_7" "dna" "Bacteriophage phi-29 early protein GP16.7" "2c5r" "PF06720.6" "1" "2.90" "2c5r.B_66-128.2c5r.pdb1.pdb"
"4byd" "Plasmid_Txe" "rna" "Plasmid encoded toxin Txe" "4byb,4byd" "PF06769.8" "2" "3.35" "4byd.Y_5-84.4byd.pdb1.pdb"
"4ohy" "Clp1" "rna" "Pre-mRNA cleavage complex II protein Clp1" "4oi1,4ohz,4oi0,4ohy" "PF06807.9" "4" "2.00" "4ohy.A_232-423.4ohy.pdb1.pdb"
"4pqu" "RVT_connect" "hybrid" "Reverse transcriptase connection domain" "3kjv,1n6q,3kk3,1r0a,4b3q,3kle,3kk1,3klf,1rtd,1t05,1hvu,4b3o,3v6d,3jsm,2hmi,1n5y,1t03,3jyt,1hys,3v4i,3kk2,3klg,1j5o,4r5p,4pqu,4puo,4q0b,4pwd,3klh,3v81" "PF06815.8" "30" "2.51" "4pqu.C_317-419.4pqu.pdb2.pdb"
"4pqu" "RVT_thumb" "hybrid" "Reverse transcriptase thumb domain" "3kle,1n6q,3v81,4b3p,4b3o,1r0a,3kk1,4b3q,3klf,3kjv,3klh,3jsm,1n5y,1hys,3v4i,1rtd,1t03,3jyt,3klg,1t05,2hmi,3kk2,3v6d,1j5o,3kk3,4pqu,4q0b,4puo,4pwd,4r5p" "PF06817.9" "30" "2.51" "4pqu.A_238-307.4pqu.pdb1.pdb"
"1k3x" "zf-FPG_IleRS" "dna" "Zinc finger found in FPG and IleRS" "4pcz,2f5n,4pdg,4pd2,4pdi,4g4o,3u6l,4g4q,4g4r,3jr5,1l2d,3jr4,1xc8,1k82,2f5s,3gq3,3gpx,1k3x,3gp1,1qu2,2oq4,1kfv,2opf,1l2c,1ffy,1l1z,3u6p,3gpu,3saw,3gq4,3sbj,3sau,1tdz,2xzf,3sar,3c58,3gpp,2ea0,1pm5,1k3w,1nnj,2f5p,1pjj,3gq5,1l1t,2xzu,1r2y,3go8,2f5o,3gpy,3sas,1r2z,1pji,1l2b,2f5q,3u6m,3u6d,3u6s,3u6o,3u6e,4g4n,3u6c,3u6q,4cis" "PF06827.9" "64" "1.25" "1k3x.A_234-262.1k3x.pdb1.pdb"
"1k3x" "H2TH" "dna" "Formamidopyrimidine-DNA glycosylase H2TH domain" "3u6c,4nrw,3u6o,3u6m,3u6d,3u6e,4g4n,3u6s,3u6q,4cis,3u6l,3twm,3vk8,3vk7,4g4o,4g4q,4g4r,4pdg,4pdi,4pd2,4pcz,2f5n,3gq5,3c58,3gpy,2f5o,1l1t,2ea0,1pjj,1r2z,3gpp,1pji,1r2y,1nnj,2xzu,3go8,2f5q,1pm5,1k3w,1l2b,3sas,2f5p,3gq3,2oq4,1xc8,1k3x,1l2d,3sat,1kfv,2f5s,2opf,3gp1,3a46,3jr5,3gpx,1k82,1l2c,1l1z,3sav,3gpu,3u6p,3saw,3gq4,1tdz,3sbj,3sar,2xzf,3sau" "PF06831.9" "68" "1.25" "1k3x.A_125-227.1k3x.pdb1.pdb"
"3ikt" "Put_DNA-bind_N" "dna" "Putative DNA-binding protein N-terminus" "3il2,3ket,3wgi,3ikt" "PF06971.8" "4" "2.26" "3ikt.B_1-50.3ikt.pdb1.pdb"
"3j7y" "MRP-L47" "rna" "Mitochondrial 39-S ribosomal protein L47 (MRP-L47)" "3j7y" "PF06984.8" "1" "3.40" "3j7y.Y_64-149.3j7y.pdb1.pdb"
"3j7y" "PDCD9" "rna" "Mitochondrial 28S ribosomal protein S30 (PDCD9)" "3j7y" "PF07147.7" "1" "3.40" "3j7y.s_41-429.3j7y.pdb1.pdb"
"1jb7" "TEBP_beta" "dna" "Telomere-binding protein beta subunit (TEBP beta)" "1ph7,1ph3,1ph4,1pa6,1jb7,1ph9,1ph5,1ph2,1ph6,1ph8,2i0q,1phj,1ph1,1otc" "PF07404.6" "14" "1.86" "1jb7.B_9-224.1jb7.pdb1.pdb"
"1h2c" "VP40" "rna" "Matrix protein VP40" "1h2c,1h2d" "PF07447.7" "2" "1.60" "1h2c.A_69-192.1h2c.pdb1.pdb"
"1i3j" "NUMOD3" "dna" "NUMOD3 motif (2 copies)" "1i3j,1t2t" "PF07460.6" "2" "2.20" "1i3j.A_178-206.1i3j.pdb1.pdb"
"1u3e" "NUMOD4" "dna" "NUMOD4 motif" "1u3e" "PF07463.6" "1" "2.92" "1u3e.M_1-47.1u3e.pdb1.pdb"
"2a8v" "Rho_RNA_bind" "rna" "Rho termination factor, RNA-binding domain" "2a8v,1xpo,2ht1,1pvo,1pv4,1xpr,1xpu" "PF07497.7" "7" "2.40" "2a8v.B_49-118.2a8v.pdb2.pdb"
"1c7y" "RuvA_C" "dna" "RuvA, C-terminal domain" "1c7y" "PF07499.8" "1" "3.10" "1c7y.j_158-203.1c7y.pdb1.pdb"
"4kis" "Recombinase" "dna" "Recombinase" "4kis" "PF07508.8" "1" "3.20" "4kis.B_171-254.4kis.pdb2.pdb"
"5a0t" "RMMBL" "rna" "RNA-metabolising metallo-beta-lactamase" "5a0v,5a0t,3ie1" "PF07521.7" "3" "2.28" "5a0t.A_364-403.5a0t.pdb1.pdb"
"3qsy" "EIF_2_alpha" "rna" "Eukaryotic translation initiation factor 2 alpha subunit" "3qsy,3j81" "PF07541.7" "2" "3.20" "3qsy.B_176-236.3qsy.pdb1.pdb"
"2f8k" "SAM_2" "rna" "SAM domain (Sterile alpha motif)" "2f8k" "PF07647.12" "1" "2.00" "2f8k.A_448-510.2f8k.pdb1.pdb"
"3iev" "KH_2" "rna" "KH domain" "4cxc,4ulr,4qs0,4ul6,4uq4,4kzy,4ujk,4kzz,4w28,4kzx,4w23,1vx5,1vw9,4ujr,4ukz,4ukh,1vxz,1vx2,3j5f,4uer,4ule,3j18,3jam,3r9w,4ukm,3iev,4uk1,1vxw,4ukb,3j81,4ukk,4uku,4ul4,4uju,4ujf,4ulb,4ujw,4ulp,5a2q,4uk9,4ul9,4uq5,4ukp,1vwv,4ukw,4ukf,3j80,4ukr,4ulg,4ulj,4ujz,4ujm,4uk4,4ujh,4d5l,4uk6,4ulm,4ujp,4d61,3r9x" "PF07650.12" "60" "1.90" "3iev.A_209-288.3iev.pdb1.pdb"
"3o8c" "Flavi_DEAD" "rna" "Flavivirus DEAD domain " "3kqn,2jlv,2jlz,2jlu,3kqu,3kqk,2jly,2jlx,3kql,2jlw,3kqh,3o8c" "PF07652.9" "12" "2.00" "3o8c.A_242-336.3o8c.pdb1.pdb"
"3agv" "C1-set" "rna" "Immunoglobulin C1-set domain" "3agv" "PF07654.10" "1" "2.15" "3agv.A_352-437.3agv.pdb1.pdb"
"4z8f" "V-set" "dna" "Immunoglobulin V-set domain" "2ok0,4kzd,2r8s,2fr4,1ehl,4z8f,1xf2,3ivk,1i8m,1keg,4q9r,4q9q,4kze,1cbv,3vw3" "PF07686.12" "15" "1.75" "4z8f.H_1-111.4z8f.pdb1.pdb"
"1gu4" "bZIP_2" "dna" "Basic region leucine zipper" "2e42,1h8a,1nwq,1hjb,2e43,1io4,1gu5,1gu4,1h89,1h88,1s9k,1gtw,1a02" "PF07716.10" "13" "1.80" "1gu4.B_270-323.1gu4.pdb1.pdb"
"3f2b" "DNA_pol3_alpha" "dna" "Bacterial DNA polymerase III alpha subunit" "3f2d,4iqj,3e0d,3f2c,3f2b" "PF07733.7" "5" "2.39" "3f2b.A_831-1255.3f2b.pdb1.pdb"
"2bnw" "Omega_Repress" "dna" "Omega Transcriptional Repressor" "2cax,2bnz,2bnw" "PF07764.6" "3" "2.45" "2bnw.D_25-71.2bnw.pdb1.pdb"
"1rh6" "Exc" "dna" "Excisionase-like protein" "2og0,1rh6,2ief" "PF07825.6" "3" "1.70" "1rh6.B_1-52.1rh6.pdb1.pdb"
"3dvo" "Bse634I" "dna" "Cfr10I/Bse634I restriction endonuclease" "3dvo,3dpg,3v1z,3v21,3v20,3mq6,3n78,3n7b,3mqy,3dw9" "PF07832.6" "10" "1.89" "3dvo.A_48-332.3dvo.pdb1.pdb"
"1n35" "RdRP_5" "rna" "Reovirus RNA-dependent RNA polymerase lambda 3" "1uon,1n38,1n35,1n1h" "PF07925.6" "4" "2.50" "1n35.A_2-1263.1n35.pdb1.pdb"
"3ih7" "OGG_N" "dna" "8-oxoguanine DNA glycosylase, N-terminal domain" "3ih7" "PF07934.7" "1" "3.10" "3ih7.A_25-141.3ih7.pdb1.pdb"
"1qf6" "tRNA_SAD" "rna" "Threonyl and Alanyl tRNA synthetase second additional domain" "1qf6" "PF07973.9" "1" "2.90" "1qf6.A_171-219.1qf6.pdb1.pdb"
"4uy8" "Tna_leader" "rna" "Tryptophanese operon leader peptide" "4uy8" "PF08053.6" "1" "3.80" "4uy8.7_5-24.4uy8.pdb1.pdb"
"3pla" "NOSIC" "rna" "NOSIC (NUC001) domain" "3pla" "PF08060.8" "1" "3.15" "3pla.B_139-191.3pla.pdb1.pdb"
"3hax" "DKCLD" "rna" "DKCLD (NUC011) domain" "3hjw,2rfk,3hay,3hjy,3lwp,3lwq,3lwr,3lwv,3lwo,3hax,2hvy" "PF08068.7" "11" "2.11" "3hax.A_11-66.3hax.pdb1.pdb"
"4ujr" "Ribosomal_S13_N" "rna" "Ribosomal S13/S15 N-terminal domain" "3jam,4kzx,4bpp,4uer,4ul4,4ukf,4ujz,4ulj,4uk6,4uk9,4ulg,3j7a,4ukr,4ukw,4ulb,4ulm,4ujf,4ul9,4ukk,4uku,4uk4,4uju,4uk1,1vxw,4ujh,4d5l,4ul1,4ujw,5a2q,1vwv,4ulp,3j80,4uq5,4ukp,4ujm,4ukb,4ujp,4d61,2xzn,3o30,3o2z,4bpe,4ukm,2xzm,4ukh,3j43,4ujk,4uq4,4ujr,1vx2,4ul6,4w23,4ulr,4kzy,1vw9,1vxz,1vx5,4w28,4cxc,4kzz,4ukz,3j81,4bpo,3j20,4bpn,4ule" "PF08069.7" "66" "2.80" "4ujr.r_2-60.4ujr.pdb2.pdb"
"4ujp" "RS4NT" "rna" "RS4NT (NUC023) domain" "4bpn,4bpo,3j20,4ule,3j43,4uer,2xzm,4bpp,3jam,4kzz,4ujk,4ul6,4cxc,3j81,1vx5,4uq4,1vw9,4ukh,4ulr,4kzx,4kzy,4ukz,4ujr,1vx2,4w28,4w23,1vxz,4ujf,5a2q,3j7a,4uq5,4uku,4ulb,4ukr,4ul9,4uk1,4ukp,4ukb,4d5l,4ul4,4ulm,4ul1,4d61,4ujp,4ukf,4ulg,4ujm,4uju,4uk4,4ujz,4ujh,4uk6,4ujw,4uk9,4ukw,4ulp,1vwv,4ukk,4ulj,3j80,1vxw,2xzn,4ukm,4bpe" "PF08071.7" "64" "2.80" "4ujp.F_3-40.4ujp.pdb1.pdb"
"4ujs" "Ribosomal_L30_N" "rna" "Ribosomal L30 N-terminal domain" "3o5h,3o58,4ulk,4ujv,4uln,4ul7,4ujg,4ulq,4ulf,4ujn,4ukg,4uk2,4ujq,4uks,4ukn,4ul0,4ukl,4ukx,4uki,4uka,4ujs,4ujx,4ul2,4ul5,4uls,4ulc,4ujl,4uk7,4ukv,4ukc,4uji,4uk5,4ula,4uk0,4ukq,4ulh" "PF08079.7" "36" "2.80" "4ujs.Q_22-81.4ujs.pdb1.pdb"
"4wzw" "CPL" "dna" "CPL (NUC119) domain" "4wzw" "PF08144.6" "1" "2.95" "4wzw.A_433-580.4wzw.pdb1.pdb"
"2xgj" "DSHCT" "rna" "DSHCT (NUC185) domain" "2xgj" "PF08148.7" "1" "2.90" "2xgj.B_895-1073.2xgj.pdb2.pdb"
"3s59" "C2-set_2" "dna" "CD80-like C2-set immunoglobulin domain " "3s58,4oi7,4oi8,3s59" "PF08205.7" "4" "2.80" "3s59.B_124-219.3s59.pdb1.pdb"
"3huy" "EFP_N" "rna" "Elongation factor P (EF-P) KOW-like domain" "3huw,3huy" "PF08207.7" "2" "3.10" "3huy.V_3-60.3huy.pdb1.pdb"
"5aj3" "DUF1713" "rna" "Mitochondrial domain of unknown function (DUF1713)" "5aj3" "PF08213.6" "1" "3.60" "5aj3.n_128-159.5aj3.pdb1.pdb"
"4arc" "Anticodon_1" "rna" "Anticodon-binding domain of tRNA" "1wz2,1gax,2v0g,2byt,2csx,1ffy,1qu3,1qu2,2bte,2ct8,4cqn,1ivs,4aq7,3zju,3zjv,3zgz,4arc,4ari,4as1,3zjt" "PF08264.8" "20" "2.00" "4arc.A_698-827.4arc.pdb1.pdb"
"4bbs" "TF_Zn_Ribbon" "hybrid" "TFIIB zinc-binding" "4v1o,4v1n,4bbs" "PF08271.7" "3" "3.60" "4bbs.M_22-66.4bbs.pdb1.pdb"
"3b39" "Toprim_N" "dna" "DNA primase catalytic core, N-terminal domain" "3b39" "PF08275.6" "1" "2.35" "3b39.B_126-252.3b39.pdb2.pdb"
"2h27" "Sigma70_r4_2" "dna" "Sigma-70, region 4" "2h27" "PF08281.7" "1" "2.30" "2h27.D_128-181.2h27.pdb2.pdb"
"5aj3" "MRP-S33" "rna" "Mitochondrial ribosomal subunit S27" "5aj3" "PF08293.6" "1" "3.60" "5aj3.i_6-100.5aj3.pdb1.pdb"
"3pvv" "Bac_DnaA_C" "dna" "Bacterial dnaA protein helix-turn-helix" "1j1v,3pvv,3pvp" "PF08299.6" "3" "2.00" "3pvv.A_412-480.3pvv.pdb1.pdb"
"3icq" "Xpo1" "rna" "Exportin 1-like protein" "3icq" "PF08389.7" "1" "3.20" "3icq.T_101-253.3icq.pdb1.pdb"
"4jrp" "Exonuc_X-T_C" "dna" "Exonuclease C-terminal" "4js4,4jrq,4js5,4jrp,4hcb,4hcc" "PF08411.5" "6" "1.95" "4jrp.A_212-474.4jrp.pdb3.pdb"
"3add" "KTI12" "rna" "Chromatin associated protein KTI12 " "3add,3adb,3adc" "PF08433.5" "3" "2.40" "3add.B_2-233.3add.pdb1.pdb"
"3j20" "HTH_12" "rna" "Ribonuclease R winged-helix domain" "3j43,3j20" "PF08461.5" "2" "6.60" "3j20.U_87-129.3j20.pdb1.pdb"
"3amt" "DUF1743" "rna" "Domain of unknown function (DUF1743)" "3amu,3amt" "PF08489.6" "2" "2.90" "3amt.A_139-252.3amt.pdb1.pdb"
"1r71" "KorB" "dna" "KorB domain" "1r71" "PF08535.5" "1" "2.20" "1r71.D_166-252.1r71.pdb2.pdb"
"3n1i" "Whirly" "dna" "Whirly transcription factor" "3ra0,3n1l,3n1j,3n1k,3n1i" "PF08536.6" "5" "2.20" "3n1i.A_62-200.3n1i.pdb1.pdb"
"3u7f" "PNK3P" "dna" "Polynucleotide kinase 3 phosphatase" "3u7f,3u7h,3zvn,3u7g,3zvm" "PF08645.6" "5" "1.80" "3u7f.B_165-327.3u7f.pdb1.pdb"
"4gnx" "Rep_fac-A_C" "dna" "Replication factor-A C terminal domain" "4gnx,3j44,4gop" "PF08646.5" "3" "2.80" "4gnx.C_470-615.4gnx.pdb1.pdb"
"4j7m" "RAI1" "rna" "RAI1 like PD-(D/E)XK nuclease" "4j7l,4j7m,5bud,5bte" "PF08652.6" "4" "1.70" "4j7m.A_235-303.4j7m.pdb1.pdb"
"4uer" "eIF2A" "rna" "Eukaryotic translation initiation factor eIF2A" "4uer" "PF08662.6" "1" "6.47" "4uer.b_458-685.4uer.pdb1.pdb"
"4z4d" "DUF1785" "rna" "Domain of unknown function (DUF1785)" "4z4i,4z4h,4krf,4olb,4kxt,4ola,4kre,4w5r,4z4e,4z4g,4w5o,4z4f,4w5q,4w5t,4z4c,4w5n,4z4d,4ei1,4f3t,4ei3" "PF08699.5" "20" "1.60" "4z4d.A_175-227.4z4d.pdb1.pdb"
"3vw4" "PriCT_1" "dna" "Primase C terminal 1 (PriCT-1)" "3vw4" "PF08708.6" "1" "2.70" "3vw4.A_171-238.3vw4.pdb1.pdb"
"3jxy" "DNA_alkylation" "dna" "DNA alkylation repair enzyme" "3jxy,3jxz,3jx7,3jy1" "PF08713.6" "4" "1.50" "3jxy.A_8-221.3jxy.pdb1.pdb"
"1uut" "Rep_N" "dna" "Rep protein catalytic domain like" "1uut,1rz9,5byg,4zq9" "PF08724.5" "4" "2.00" "1uut.B_4-189.1uut.pdb2.pdb"
"4lmg" "AFT" "dna" "Transcription factor AFT" "4lmg" "PF08731.6" "1" "2.20" "4lmg.B_51-108.4lmg.pdb2.pdb"
"1omh" "TrwC" "dna" "TrwC relaxase" "2cdm,1zm5,1qx0,4pcb,1s6m,1osb,1omh,2a0i" "PF08751.6" "8" "1.95" "1omh.A_4-292.1omh.pdb1.pdb"
"2hzv" "NikR_C" "dna" "NikR C terminal nickel binding domain" "2hzv" "PF08753.6" "1" "3.10" "2hzv.F_53-131.2hzv.pdb2.pdb"
"1lq1" "Spo0A_C" "dna" "Sporulation initiation factor Spo0A C terminal" "1lq1" "PF08769.6" "1" "2.30" "1lq1.D_156-261.1lq1.pdb1.pdb"
"4ri9" "VRR_NUC" "dna" "VRR-NUC domain" "4r89,4r8a,4ri8,4ri9,4ria,4rea" "PF08774.6" "6" "2.90" "4ri9.B_893-1008.4ri9.pdb2.pdb"
"3vwb" "ParB" "dna" "ParB family" "2ntz,1zx4,3vwb,3w2a,3w3c" "PF08775.5" "5" "2.42" "3vwb.A_182-246.3vwb.pdb1.pdb"
"4erd" "RRM_3" "rna" "RNA binding motif" "4erd" "PF08777.6" "1" "2.59" "4erd.A_379-531.4erd.pdb1.pdb"
"4s0n" "HIRAN" "dna" "HIRAN domain" "4s0n" "PF08797.6" "1" "1.50" "4s0n.B_60-155.4s0n.pdb1.pdb"
"2y8y" "CRISPR_assoc" "rna" "CRISPR associated protein" "4qyz,4u7u,1vy8,1vy9,5cd4,3qrp,2y9h,2y8y,3qrq,3qrr,2y8w" "PF08798.6" "11" "1.44" "2y8y.A_1-211.2y8y.pdb1.pdb"
"2xfz" "Cytotoxic" "rna" "Cytotoxic" "2xfz" "PF09000.5" "1" "3.20" "2xfz.Y_9-96.2xfz.pdb1.pdb"
"1z1b" "Phage_integ_N" "dna" "Bacteriophage lambda integrase, N-terminal domain " "1z1b,1z1g" "PF09003.5" "2" "3.80" "1z1b.B_7-71.1z1b.pdb1.pdb"
"4qr9" "HMG_box_2" "dna" "HMG-box domain" "3tq6,3tmm,4nnu,4qr9,4nod,1ckt" "PF09011.5" "6" "2.00" "4qr9.A_5-78.4qr9.pdb1.pdb"
"1fiu" "NgoMIV_restric" "dna" "NgoMIV restriction enzyme" "1fiu,4abt" "PF09015.5" "2" "1.60" "1fiu.C_12-286.1fiu.pdb1.pdb"
"2gb7" "EcoRII-C" "dna" "EcoRII C terminal" "2fqz,3bm3,2gb7,3hqg" "PF09019.6" "4" "1.70" "2gb7.D_78-252.2gb7.pdb2.pdb"
"1wpu" "HutP" "rna" "HutP" "3boy,1wmq,1wpu,1wrq" "PF09021.6" "4" "1.48" "1wpu.L_8-146.1wpu.pdb1.pdb"
"4fcy" "HTH_Tnp_Mu_2" "dna" "Mu DNA binding, I gamma subdomain" "4fcy" "PF09039.6" "1" "3.71" "4fcy.G_149-266.4fcy.pdb2.pdb"
"3orc" "Cro" "dna" "Cro" "6cro,3orc" "PF09048.5" "2" "3.00" "3orc.A_2-65.3orc.pdb1.pdb"
"2qux" "Phage_coat" "rna" "Phage PP7 coat protein" "2qux" "PF09063.5" "1" "2.44" "2qux.J_1-127.2qux.pdb4.pdb"
"2v1u" "Cdc6_C" "dna" "CDC6, C terminal " "2qby,2v1u" "PF09079.6" "2" "3.10" "2v1u.A_308-389.2v1u.pdb1.pdb"
"1mje" "BRCA-2_OB3" "dna" "BRCA2, oligonucleotide/oligosaccharide-binding, domain 3" "1mje" "PF09104.5" "1" "3.50" "1mje.A_2971-3109.1mje.pdb1.pdb"
"2uwm" "SelB-wing_2" "rna" "Elongation factor SelB, winged helix " "2ply,2uwm" "PF09106.6" "2" "2.31" "2uwm.A_447-504.2uwm.pdb1.pdb"
"2pjp" "SelB-wing_3" "rna" "Elongation factor SelB, winged helix " "1wsu,2ply,2uwm,2pjp" "PF09107.6" "4" "2.30" "2pjp.A_557-606.2pjp.pdb1.pdb"
"3u5z" "gp45-slide_C" "dna" "gp45 sliding clamp, C terminal" "3u5z" "PF09116.5" "1" "3.50" "3u5z.H_6113-6228.3u5z.pdb1.pdb"
"1mje" "Tower" "dna" "Tower" "1mje" "PF09121.5" "1" "3.50" "1mje.A_2752-2792.1mje.pdb1.pdb"
"2qnf" "Endonuc-dimeris" "dna" "T4 recombination endonuclease VII, dimerisation" "2qnf,2qnc" "PF09124.5" "2" "3.00" "2qnf.A_104-157.2qnf.pdb1.pdb"
"1iaw" "NaeI" "dna" "Restriction endonuclease NaeI " "1iaw" "PF09126.5" "1" "2.40" "1iaw.B_12-309.1iaw.pdb1.pdb"
"1k8w" "TruB-C_2" "rna" "Pseudouridine synthase II TruB, C-terminal" "1k8w" "PF09157.6" "1" "1.85" "1k8w.A_252-309.1k8w.pdb1.pdb"
"3rw6" "Tap-RNA_bind" "rna" "Tap, RNA-binding" "3rw6" "PF09162.5" "1" "2.30" "3rw6.A_118-200.3rw6.pdb1.pdb"
"3qsy" "eIF2_C" "rna" "Initiation factor eIF2 gamma, C terminal" "3qsy" "PF09173.6" "1" "3.20" "3qsy.A_326-413.3qsy.pdb1.pdb"
"3a2k" "TilS" "rna" "TilS substrate binding domain" "3a2k" "PF09179.6" "1" "3.65" "3a2k.B_256-326.3a2k.pdb2.pdb"
"1u0b" "DALR_2" "rna" "DALR domain" "1u0b" "PF09190.6" "1" "2.30" "1u0b.B_341-402.1u0b.pdb1.pdb"
"1dc1" "Endonuc-BsobI" "dna" "Restriction endonuclease BsobI" "1dc1" "PF09194.5" "1" "1.70" "1dc1.B_5-323.1dc1.pdb1.pdb"
"1dfm" "Endonuc-BglII" "dna" "Restriction endonuclease BglII" "1vrr,2p0j,1dfm,1d2i" "PF09195.6" "4" "1.50" "1dfm.B_10-171.1dfm.pdb1.pdb"
"1ign" "Rap1-DNA-bind" "dna" "Rap1, DNA-binding" "1ign,4gfb,3ukg" "PF09197.5" "3" "2.25" "1ign.A_448-592.1ign.pdb1.pdb"
"1m5r" "T4-Gluco-transf" "dna" "Bacteriophage T4 beta-glucosyltransferase" "1sxp,1ixy,1m5r" "PF09198.5" "3" "1.80" "1m5r.A_1-38.1m5r.pdb1.pdb"
"1sa3" "Endonuc-MspI" "dna" "Restriction endonuclease MspI " "1sa3,1yfi" "PF09208.5" "2" "1.95" "1sa3.A_2-262.1sa3.pdb1.pdb"
"3hqf" "EcoRII-N" "dna" "Restriction endonuclease EcoRII, N-terminal" "3hqf" "PF09217.5" "1" "2.51" "3hqf.A_12-168.3hqf.pdb1.pdb"
"3pvi" "Endonuc-PvuII" "dna" "Restriction endonuclease PvuII" "1pvi,2pvi,1f0o,1eyu,3pvi" "PF09225.5" "5" "1.59" "3pvi.B_3-157.3pvi.pdb1.pdb"
"2gig" "Endonuc-HincII" "dna" "Restriction endonuclease HincII" "3e3y,1tw8,3e45,1xhu,2gie,3ebc,3e44,3e40,1tx3,1kc6,3e41,1xhv,3e43,3e42,2gii,2gih,2gij,2gig" "PF09226.6" "18" "1.83" "2gig.B_2-257.2gig.pdb1.pdb"
"1sx5" "Endonuc-EcoRV" "dna" "Restriction endonuclease EcoRV" "1rvb,1eop,1sx8,2ge5,1rvc,2b0e,1rv5,1eon,1bua,1eoo,1eo4,1suz,1stx,1sx5,4rve,1az0,1bsu,1rva,1b97,2b0d,1b95,1bss,1b96,1bgb,1b94,1eo3,2rve,4orj" "PF09233.6" "28" "1.50" "1sx5.A_5-244.1sx5.pdb1.pdb"
"3ovb" "tRNA_NucTransf2" "rna" "tRNA nucleotidyltransferase, second domain" "2zh5,2zh7,2zh6,1tfw,2dr9,3ovs,3ova,3ouy,2dvi,2zh4,2dr8,2zhb,2zh2,2zha,2zh3,3ov7,2dr7,3ovb,2zh8,1tfy,2zh9,2dr5,2zh1,2drb,2dra,1sz1,4x4p,4x4u,4x4o,4x4v,4x4s,4x4n,4x4q,4x4t,4x4r" "PF09249.6" "35" "1.95" "3ovb.B_146-256.3ovb.pdb1.pdb"
"1fok" "Endonuc-FokI_C" "dna" "Restriction endonuclease FokI, C terminal" "1fok" "PF09254.6" "1" "2.80" "1fok.A_387-579.1fok.pdb1.pdb"
"2h7g" "VirDNA-topo-I_N" "dna" "Viral DNA topoisomerase I, N-terminal" "3igc,2h7f,2h7g" "PF09266.5" "3" "1.90" "2h7g.X_4-61.2h7g.pdb1.pdb"
"3iag" "BTD" "dna" "Beta-trefoil DNA-binding domain" "1ttu,3brd,3brg,3iag,2fo1,3nbn,3brf,4j2x,3v79,2f8x" "PF09270.5" "10" "2.00" "3iag.C_205-354.3iag.pdb1.pdb"
"3iag" "LAG1-DNAbind" "dna" "LAG1, DNA binding" "3nbn,2f8x,3v79,3brg,3brd,1ttu,3brf,3iag,2fo1,4j2x" "PF09271.6" "10" "2.00" "3iag.C_73-204.3iag.pdb1.pdb"
"2zhg" "MerR-DNA-bind" "dna" "MerR, DNA binding" "2zhg" "PF09278.6" "1" "2.80" "2zhg.D_54-119.2zhg.pdb1.pdb"
"4bwj" "Taq-exonuc" "dna" "Taq polymerase, exonuclease" "3py8,4dle,3lwm,3rr7,3m8r,4elu,3ojs,4elv,3sz2,3sv3,4dlg,4df8,4dfm,4dfp,4dfj,3oju,3rtv,3t3f,3rrg,3po4,4bwj" "PF09281.5" "21" "1.55" "4bwj.A_294-420.4bwj.pdb1.pdb"
"3huy" "Elong-fact-P_C" "rna" "Elongation factor P, C-terminal" "3huw,3huy" "PF09285.6" "2" "3.10" "3huy.V_128-183.3huy.pdb1.pdb"
"2ihn" "RNaseH_C" "dna" "T4 RNase H, C terminal" "2ihn" "PF09293.5" "1" "3.00" "2ihn.A_183-305.2ihn.pdb1.pdb"
"4fcy" "Mu-transpos_C" "dna" "Mu transposase, C-terminal" "4fcy" "PF09299.6" "1" "3.71" "4fcy.Q_485-557.4fcy.pdb2.pdb"
"1cqt" "PD-C2-AF1" "dna" "POU domain, class 2, associating factor 1" "1cqt" "PF09310.5" "1" "3.20" "1cqt.J_800-822.1cqt.pdb2.pdb"
"2csx" "tRNA-synt_1g" "rna" "tRNA synthetases class I (M)" "2ct8,2bte,2byt,2csx" "PF09334.6" "4" "2.70" "2csx.B_121-359.2csx.pdb2.pdb"
"2xro" "HTH_IclR" "dna" "IclR helix-turn-helix domain" "2xro" "PF09339.5" "1" "3.40" "2xro.A_16-67.2xro.pdb1.pdb"
"4u7u" "Cas_CT1975" "rna" "CT1975-like protein" "5cd4,4u7u,4qyz,1vy8,1vy9" "PF09344.5" "5" "3.00" "4u7u.F_5-358.4u7u.pdb1.pdb"
"3aaf" "RQC" "dna" "RQC domain" "4tmu,4u7d,2wwy,4o3m,4cgz,3aaf" "PF09382.5" "6" "1.90" "3aaf.A_958-1061.3aaf.pdb1.pdb"
"2gje" "MRP" "rna" "Mitochondrial RNA binding protein MRP" "2gje" "PF09387.5" "1" "3.37" "2gje.D_27-173.2gje.pdb1.pdb"
"2ve9" "Ftsk_gamma" "dna" "Ftsk gamma domain" "2ve9" "PF09397.5" "1" "1.90" "2ve9.F_745-807.2ve9.pdb2.pdb"
"2j0s" "Btz" "rna" "CASC3/Barentsz eIF4AIII binding" "2xb2,2hyi,2j0q,3ex7,2j0s" "PF09405.5" "5" "2.21" "2j0s.T_169-216.2j0s.pdb1.pdb"
"2hvr" "RNA_ligase" "hybrid" "RNA ligase" "2hvs,2hvr" "PF09414.5" "2" "2.45" "2hvr.B_28-227.2hvr.pdb2.pdb"
"4ne1" "CENP-X" "dna" "CENP-S associating Centromere protein X" "4ndy,4ne1" "PF09415.5" "2" "6.50" "4ne1.U_11-81.4ne1.pdb11.pdb"
"4u7u" "CRISPR_Cse1" "rna" "CRISPR-associated protein Cse1 (CRISPR_cse1)" "5cd4,4u7u,1vy8,1vy9" "PF09481.5" "4" "3.00" "4u7u.M_2-464.4u7u.pdb1.pdb"
"4qyz" "CRISPR_Cse2" "hybrid" "CRISPR-associated protein Cse2 (CRISPR_cse2)" "4qyz" "PF09485.5" "1" "3.03" "4qyz.C_20-153.4qyz.pdb1.pdb"
"3mx4" "RE_Eco29kI" "dna" "Eco29kI restriction endonuclease" "3mx4,3nic" "PF09517.5" "2" "2.50" "3mx4.B_40-210.3mx4.pdb2.pdb"
"2e52" "RE_HindIII" "dna" "HindIII restriction endonuclease" "3wvk,3wvh,3wvg,3wvi,3a4k,3wvp,2e52" "PF09518.5" "7" "2.00" "2e52.D_6-296.2e52.pdb2.pdb"
"3waz" "RE_R_Pab1" "dna" "R.Pab1 restriction endonuclease" "3waz" "PF09522.5" "1" "3.00" "3waz.B_105-224.3waz.pdb1.pdb"
"4rd5" "RE_NgoFVII" "dna" "NgoFVII restriction endonuclease" "4rd5,4rdm" "PF09565.5" "2" "2.70" "4rd5.B_185-318.4rd5.pdb2.pdb"
"3sm4" "YqaJ" "dna" "YqaJ-like viral recombinase domain" "4wuz,3sz5,3sm4,3slp" "PF09588.5" "4" "1.88" "3sm4.A_23-168.3sm4.pdb1.pdb"
"4ujs" "Stm1_N" "rna" "Stm1" "4uls,4ujn,4uk7,4uki,4ukn,4uk2,4ukx,4uln,4ul7,4ujs,4ulc,4ul2,4ujx,4uks,4uji,4ulh,4ukc" "PF09598.5" "17" "2.80" "4ujs.H_23-62.4ujs.pdb1.pdb"
"2xlk" "Cas_Csy4" "hybrid" "CRISPR-associated protein (Cas_Csy4)" "2xli,4al7,2xlk,2xlj,4al6,4al5" "PF09618.5" "6" "1.80" "2xlk.B_4-187.2xlk.pdb1.pdb"
"3wzi" "Cas_csx3" "rna" "CRISPR-associated protein (Cas_csx3)" "3wzi" "PF09620.5" "1" "2.90" "3wzi.B_15-91.3wzi.pdb1.pdb"
"3x1l" "Cas_Cmr3" "hybrid" "CRISPR-associated protein (Cas_Cmr3)" "3x1l" "PF09700.5" "1" "2.10" "3x1l.B_4-321.3x1l.pdb1.pdb"
"3x1l" "Cas_Cmr5" "hybrid" "CRISPR-associated protein (Cas_Cmr5)" "3x1l" "PF09701.5" "1" "2.10" "3x1l.G_5-151.3x1l.pdb1.pdb"
"4u7u" "Cas_Cas5d" "rna" "CRISPR-associated protein (Cas_Cas5)" "4u7u,1vy8,4qyz,1vy9,5cd4" "PF09704.5" "5" "3.00" "4u7u.K_4-214.4u7u.pdb1.pdb"
"4qtj" "Gti1_Pac2" "dna" "Gti1/Pac2 family" "4qtk,4m8b,4qtj" "PF09729.4" "3" "2.10" "4qtj.A_9-203.4qtj.pdb1.pdb"
"3j7y" "MRP-L27" "rna" "Mitochondrial ribosomal protein L27" "3j7y" "PF09809.4" "1" "3.40" "3j7y.9_15-135.3j7y.pdb1.pdb"
"3j7y" "MRP-L28" "rna" "Mitochondrial ribosomal protein L28" "3j7y" "PF09812.4" "1" "3.40" "3j7y.8_63-119.3j7y.pdb1.pdb"
"4pso" "DUF2258" "dna" "Uncharacterized protein conserved in archaea (DUF2258)" "4pso" "PF10015.4" "1" "2.90" "4pso.H_3-82.4pso.pdb2.pdb"
"4c8y" "DUF2276" "hybrid" "Uncharacterized conserved protein (DUF2276)" "4c9d,4ilm,4ill,4c8z,4c8y" "PF10040.4" "5" "1.80" "4c8y.B_120-235.4c8y.pdb1.pdb"
"3j7y" "CR6_interact" "rna" "Growth arrest and DNA-damage-inducible proteins-interacting protein 1" "3j7y" "PF10147.4" "1" "3.40" "3j7y.q_25-152.3j7y.pdb1.pdb"
"2bx2" "RNase_E_G" "rna" "Ribonuclease E/G family" "2bx2,2c4r,2vrt" "PF10150.4" "3" "2.85" "2bx2.E_121-393.2bx2.pdb1.pdb"
"3j7y" "MRP-S32" "rna" "Mitochondrial 28S ribosomal protein S32" "3j7y" "PF10210.4" "1" "3.40" "3j7y.a_104-142.3j7y.pdb1.pdb"
"5aj3" "MRP-S28" "rna" "Mitochondrial ribosomal subunit protein " "5aj3" "PF10213.4" "1" "3.60" "5aj3.k_143-285.5aj3.pdb1.pdb"
"5aj3" "DAP3" "rna" "Mitochondrial ribosomal death-associated protein 3" "5aj3" "PF10236.4" "1" "3.60" "5aj3.g_98-393.5aj3.pdb1.pdb"
"3j7y" "MRP-L51" "rna" "Mitochondrial ribosomal subunit" "3j7y" "PF10244.4" "1" "3.40" "3j7y.i_38-127.3j7y.pdb1.pdb"
"5aj3" "MRP-S35" "rna" "Mitochondrial ribosomal protein MRP-S35" "5aj3" "PF10246.4" "1" "3.60" "5aj3.f_78-176.5aj3.pdb1.pdb"
"4lzg" "DNA_pol_lambd_f" "dna" "Fingers domain of DNA polymerase lambda" "4ph5,2gws,3lk9,4rq4,3pml,4o5c,3pnc,1xsl,7ice,4qzi,4klq,4uaw,3pmn,5bpc,5bol,4yd2,4ycx,4i2g,4qzf,2bcq,2bcr,4rpy,4klu,1bpx,3rh4,3rh5,3tfr,4m2y,3uq0,3c5g,3hx0,4kld,4nln,1xsp,3hw8,1xsn,4o5e,2pfq,4rq2,2bcs,3c5f,4m04,2pfn,1rzt,2pfo,2pfp,4ubc,1huo,1huz,2bpg,2ihm,2bcv,2bcu,3tfs,9icx,4o9m,4kle,4k4g,9icu,9ict,9ics,4nlz,9icr,4ppx,3hwt,9icv,4nlk,4i2h,4klm,9icw,3uxp,9icy,4klt,4nm1,4i2a,4kli,4iqw,4mfc,4i29,4ub3,4p4p,4rt2,4klf,4m9g,4uaz,4jwm,4nxz,4kll,4mff,4klo,4i2f,4m9n,4klj,4kls,4ny8,4jwn,4m0a,4p4m,4m47,4i2c,4mf2,4lzg,4k4h,4r66,4i28,4klp,4mf8,4klh,4i27,4mfa,4iqv,4m9h,4nm2,4i2b,4m9l,2isp,9icb,1zqk,9ica,2iso,8icz,1zql,1zqj,9icc,9ich,3upq,1zqh,1zqi,9ice,1zqn,3c2m,3rji,8icy,8icx,3c2l,4doa,4m9j,9icp,1zqo,8icq,8icp,8icr,8ics,8ict,8icw,8icv,8icu,3rjj,1zqm,4lvs,1zqp,2p66,4f5r,3jps,9icg,1zjm,1zjn,3gdx,1zqa,3jpr,4fo6,3mda,3jpt,9ico,3mgh,2pxi,3mdc,1zqb,3jpq,9icf,1zqf,3rjf,3rjg,4dob,4doc,3rjh,3uq2,3rje,1tva,7icv,1zqc,1tv9,1zqd,1zqe,3rh6,1zqg,8ico,2bpf,3isd,3c2k,7icm,7icl,1bpy,7ick,7icj,3isc,9icl,9icq,4klg,7icp,7ico,7icn,3rjk,9ick,7ici,7icq,2fms,3jpn,3mgi,4gxi,4gxj,4gxk,9icn,2fmq,2fmp,9icm,1bpz,7ich,4i2e,7icg,7icf,3jpo,8icn,3jpp,1zqq,4f5o,8ice,8icc,8icb,8ica,4f5q,1mq3,8icf,4f5n,8icg,8icm,8icl,8ick,8icj,8ici,8ich,2i9g,1zqr,1zqs,4f5p,3v72,3v7j,3v7k,3ogu,7icr,7ics,4do9,3isb,1mq2,1zqt,3mby,9ici,7icu,9icj,7ict,4rpz,4ubb,4pgq,4tuq,4ub1,4rq7,4pha,4qze,4qza,4p4o,4rq3,4rq8,4k4i,5bom,4qzc,4ub2,4rq6,4yd1,4tup,4phe,4rq1,4qzh,4php,4qzb,4phd,4ub4,4qz9,4rq0,4uay,4o5k,4pgx,4qzd,4r65,4qzg,4ub5,4rq5,4tur,4r63,4r64,4rt3,4qz8,4p2h,4pgy,4tus,4rpx" "PF10391.4" "305" "1.60" "4lzg.A_237-288.4lzg.pdb1.pdb"
"2qsh" "BHD_1" "dna" "Rad4 beta-hairpin domain 1" "4yir,2qsh,2qsg" "PF10403.4" "3" "2.81" "2qsh.A_429-488.2qsh.pdb1.pdb"
"2qsh" "BHD_2" "dna" "Rad4 beta-hairpin domain 2" "2qsg,2qsh,4yir" "PF10404.4" "3" "2.81" "2qsh.A_490-543.2qsh.pdb1.pdb"
"2qsh" "BHD_3" "dna" "Rad4 beta-hairpin domain 3" "4yir,2qsh,2qsg" "PF10405.4" "3" "2.81" "2qsh.A_551-626.2qsh.pdb1.pdb"
"1pp7" "IBD" "dna" "Transcription-initiator DNA-binding domain IBD" "1pp8,1pp7" "PF10416.4" "2" "2.45" "1pp7.U_6-112.1pp7.pdb1.pdb"
"4s3n" "OAS1_C" "rna" "2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus " "4rwp,4rwo,4rwn,4ig8,4s3n" "PF10421.4" "5" "2.00" "4s3n.A_155-345.4s3n.pdb1.pdb"
"1ivs" "Val_tRNA-synt_C" "rna" "Valyl tRNA synthetase tRNA binding arm" "1gax,1ivs" "PF10458.4" "2" "2.90" "1ivs.A_797-862.1ivs.pdb1.pdb"
"5aj3" "MRP-S23" "rna" "Mitochondrial ribosomal protein S23" "5aj3" "PF10484.4" "1" "3.60" "5aj3.b_2-133.5aj3.pdb1.pdb"
"3j7y" "Ribosomal_L50" "rna" "Ribosomal subunit 39S" "3j7y" "PF10501.4" "1" "3.40" "3j7y.h_58-158.3j7y.pdb1.pdb"
"4ix7" "BEN" "dna" "BEN domain" "4x0g,4ix7" "PF10523.4" "2" "1.58" "4ix7.A_278-358.4ix7.pdb1.pdb"
"3fsp" "EndIII_4Fe-2S" "dna" "Iron-sulfur binding domain of endonuclease III" "3fsq,3fsp,4ypr" "PF10576.4" "3" "2.20" "3fsp.A_198-214.3fsp.pdb1.pdb"
"3j7y" "MRP_L53" "rna" "39S ribosomal protein L53/MRP-L53" "3j7y" "PF10780.4" "1" "3.40" "3j7y.k_20-71.3j7y.pdb1.pdb"
"3ie1" "Beta-Casp" "rna" "Beta-Casp domain" "3ie1" "PF10996.3" "1" "2.85" "3ie1.D_228-351.3ie1.pdb4.pdb"
"1d02" "RestrictionMunI" "dna" "Type II restriction enzyme MunI" "1d02" "PF11407.3" "1" "1.70" "1d02.A_6-202.1d02.pdb1.pdb"
"1tc3" "HTH_Tnp_Tc3_1" "dna" "Tc3 transposase" "1tc3,1u78" "PF11427.3" "2" "2.45" "1tc3.C_203-252.1tc3.pdb1.pdb"
"1y8z" "AGT" "dna" "DNA alpha-glucosyltransferase" "1y8z,1y6g,1y6f,1ya6" "PF11440.3" "4" "1.90" "1y8z.A_1013-1368.1y8z.pdb1.pdb"
"2fkc" "R-HINP1I" "dna" "R.HinP1I restriction endonuclease" "2fl3,2fkc,2fkh,2flc" "PF11463.3" "4" "2.39" "2fkc.B_41-245.2fkc.pdb2.pdb"
"2az0" "B2" "rna" "RNA binding protein B2" "2az0,2az2" "PF11473.3" "2" "2.60" "2az0.A_2-71.2az0.pdb1.pdb"
"2ezv" "RestrictionSfiI" "dna" "Type II restriction enzyme SfiI" "2ezv,2f03" "PF11487.3" "2" "2.40" "2ezv.A_1-262.2ezv.pdb1.pdb"
"3kxt" "Cren7" "dna" "Chromatin protein Cren7" "4r55,3lwh,4r56,3lwi,3kxt" "PF11520.3" "5" "1.60" "3kxt.A_5-59.3kxt.pdb1.pdb"
"2vla" "BpuJI_N" "dna" "Restriction endonuclease BpuJI - N terminal" "2vla" "PF11564.3" "1" "1.30" "2vla.A_1-280.2vla.pdb1.pdb"
"2ost" "PDDEXK_5" "dna" "PD-(D/E)XK endonuclease" "2ost" "PF11645.3" "1" "3.10" "2ost.B_2-148.2ost.pdb1.pdb"
"3eqt" "RIG-I_C-RD" "rna" "C-terminal domain of RIG-I" "4a2x,2ykg,3eqt,3tmi,4ay2,3og8,4bpb,3zd6,3zd7,4gl2,3lrr,3ncu,3lrn" "PF11648.3" "13" "2.00" "3eqt.B_550-671.3eqt.pdb1.pdb"
"3oa6" "Tudor-knot" "dna" "RNA binding activity-knot of a chromodomain " "3oa6" "PF11717.3" "1" "2.35" "3oa6.B_11-74.3oa6.pdb1.pdb"
"3a2k" "TilS_C" "rna" "TilS substrate C-terminal domain" "3a2k" "PF11734.3" "1" "3.65" "3a2k.A_384-457.3a2k.pdb1.pdb"
"4tqr" "IMS_HHH" "dna" "IMS family HHH motif" "4fbu,3rbe,4f4w,3rb4,4fbt,4ird,4qw8,4juz,4ir1,4qwd,4f50,4qwe,4jv2,4jv1,3raq,4jv0,4g3i,2asd,1ryr,2xgq,2v4r,3in5,3mfi,2ago,2oh2,2br0,2bqu,2ibk,3pzp,4gc6,3pr4,3khh,3osn,3m9n,1s9f,3pvx,3qz8,3pw5,3h4b,2r8h,2uvv,2uvu,4rzr,2c2d,2c22,2w9a,3rax,2j6u,1s0m,3gv7,3pw2,2w9b,2c2e,1rys,2asj,2v9w,2r8j,2j6s,2w8k,3qz7,3pr5,3q8q,2jeg,3bq0,2jei,2w7p,2uvw,4irc,2xcp,1n56,2xgp,2r8k,2wtf,3q8r,2flp,2alz,3q8p,2r8i,2atl,3gij,1s0n,3gii,3gik,1n48,3gim,2w7o,2w9c,3rb0,3pw4,3khr,4ebc,4ebe,3v6h,2dpi,3bq2,3v6k,1jx4,2asl,3epi,3h40,3t5j,3q8s,2xca,3gil,4r8u,4qw9,4qwb,4tqs,4qwc,4rua,4q45,4q44,1t3n,4qwa,4tqr,1s97,2j6t,3pw7,3mfh,3g6y,3gv5,2v4q,1s0o,2va3,2agq,3gv8,3khl,1s10,3g6v,2bq3,2w8l,2imw,3g6x,3m9m,2c28,2r8g,3oha,2fll,3m9o,2rdj,3ohb,2fln,3pw0,2agp,2au0,2xc9,3khg,2c2r,3bq1,3h4d,2uvr,3epg,2dpj,1jxl,2jej,3gqc,2ia6,3ngd,2bqr,4ruc,3rbd,4irk,4q43,3rb3,3rb6,4gc7,4ir9,2jef,4f4x,4fs1,4hyk,3t5l,4ebd,3t5h,2va2,4fs2,3t5k,3v6j,4eyi,4eyh" "PF11798.3" "180" "1.58" "4tqr.A_168-199.4tqr.pdb1.pdb"
"4ecq" "IMS_C" "dna" "impB/mucB/samB family C-terminal domain" "2va2,4ed7,4ecu,4irk,2dpj,3rb3,4f4y,2alz,3rb6,3t5k,2dpi,4ir9,3t5l,4ecw,4ecy,4dl2,4q43,4ed1,3v6j,3rbd,3v6k,4f4w,3t5h,4ed6,2jef,3v6h,4ecq,4eyi,4fs1,3epg,4eyh,3epi,4ecs,4dl6,4ecx,4gc7,2fll,4ed0,2fln,4ecz,4fs2,2flp,2w7o,3mr2,1s0n,3gil,2atl,1jx4,3tq1,2asl,3mr3,3gij,3gik,4ed3,3h40,4j9o,4yr0,4ect,3pw4,3khr,3rb0,2xca,3t5j,4ecr,4f4x,3gii,3q8s,1n48,3mr6,3gim,4j9k,4ird,4ir1,4dl3,4o3q,4o3n,4o3s,4j9p,4j9m,4j9s,4qwe,4jv1,4dl7,4dl4,4j9q,4j9l,4o3p,4fbu,4g3i,4o3o,4nlg,4qwd,4fbt,4j9n,4o3r,4eey,3rbe,4j9r,3raq,4f50,4juz,4jv2,4jv0,4qw8,3rb4,2wtf,4ecv,1zet,3khh,3in5,2w9a,3h4b,2uvw,2c22,2xgq,1s9f,2bqu,3pr5,1rys,3mfi,3pw5,2r8k,3rax,3pvx,2v9w,2w9b,3qz8,3m9n,2r8i,2uvv,3q8r,4irc,2xgp,2xcp,4yr2,2br0,2oh2,3gv7,2v4r,4gc6,3qz7,2w8k,3q8q,2asd,2jeg,2ibk,1ryr,3osp,2j6u,2j6s,4rzr,3pw2,2r8h,2ago,3q8p,2jei,3pzp,3pr4,1s0m,2c2e,1n56,3osn,2r8j,2uvu,3bjy,2w7p,2asj,2c2d,4ruc,4ru9,4qwc,4yqw,4q44,4yr3,4q8e,1t3n,4tqr,4q45,4yp3,4rnm,4qwb,4rnn,4r8u,4rno,4dl5,4tqs,4qw9,4qwa,4rua,3gqc,2au0,2r8g,3mfh,3gv5,3khg,2imw,2rdj,3g6x,4ed2,3g6v,3m9o,3khl,3mr5,2bqr,3oha,2aq4,2uvr,3si8,2j6t,2agq,2v4q,1s97,3pw7,2c28,2xc9,3m9m,2w8l,2va3,1s0o,2ia6,2w9c,3ngd,2bq3,2c2r,1jxl,1s10,3h4d,3g6y,3pw0,3ohb,4ed8,2agp,2jej" "PF11799.3" "233" "1.50" "4ecq.A_307-429.4ecq.pdb1.pdb"
"4py5" "DUF3378" "hybrid" "Domain of unknown function (DUF3378)" "1ais,1d3u,4py5" "PF11858.3" "3" "2.10" "4py5.A_1-63.4py5.pdb1.pdb"
"4ndh" "DcpS_C" "dna" "Scavenger mRNA decapping enzyme C-term binding" "4ndg,4ndh,4ndi,4ndf" "PF11969.3" "4" "1.85" "4ndh.A_166-278.4ndh.pdb1.pdb"
"4o26" "Telomerase_RBD" "rna" "Telomerase ribonucleoprotein complex - RNA binding domain" "4o26" "PF12009.3" "1" "3.00" "4o26.A_426-561.4o26.pdb1.pdb"
"3ssc" "DUF3578" "dna" "Domain of unknown function (DUF3578)" "3sse,3ssd,3ssc" "PF12102.3" "3" "2.10" "3ssc.A_7-155.3ssc.pdb1.pdb"
"3fdq" "MogR_DNAbind" "dna" "DNA binding domain of the motility gene repressor (MogR)" "3fdq" "PF12181.3" "1" "1.75" "3fdq.A_9-143.3fdq.pdb1.pdb"
"3c25" "NotI" "dna" "Restriction endonuclease NotI" "3c25" "PF12183.3" "1" "2.50" "3c25.B_17-316.3c25.pdb1.pdb"
"3j9x" "Sulf_coat_C" "dna" "Sulfolobus virus coat protein C terminal" "3j9x" "PF12193.3" "1" "3.80" "3j9x.B_59-127.3j9x.pdb1.pdb"
"4pkd" "U1snRNP70_N" "rna" "U1 small nuclear ribonucleoprotein of 70kDa MW N terminal" "4pkd,4pjo" "PF12220.3" "2" "2.50" "4pkd.B_84-160.4pkd.pdb1.pdb"
"2r7w" "Rotavirus_VP1" "rna" "Rotavirus VP1 structural protein" "2r7r,2r7x,2r7w,2r7t,2r7s" "PF12289.3" "5" "2.60" "2r7w.A_828-878.2r7w.pdb1.pdb"
"1fos" "TMF_TATA_bd" "dna" "TATA element modulatory factor 1 TATA binding" "1fos" "PF12325.3" "1" "3.05" "1fos.G_142-196.1fos.pdb2.pdb"
"3iab" "Rpp20" "rna" "Rpp20 subunit of nuclear RNase MRP and P" "3iab" "PF12328.3" "1" "2.70" "3iab.D_28-135.3iab.pdb2.pdb"
"1vfg" "PolyA_pol_RNAbd" "rna" "Probable RNA and SrmB- binding site of polymerase A" "4wc4,4x0a,4wc7,4wc5,3wfr,4wc6,4wc2,1vfg,3wfq,3wfs" "PF12627.2" "10" "2.80" "1vfg.B_164-227.1vfg.pdb2.pdb"
"3er8" "Pox_polyA_pol_C" "hybrid" "Poxvirus poly(A) polymerase C-terminal domain" "3er8,3erc" "PF12629.2" "2" "3.18" "3er8.D_282-479.3er8.pdb1.pdb"
"3er9" "Pox_polyA_pol_N" "rna" "Poxvirus poly(A) polymerase N-terminal domain" "3er8,3erc,3er9" "PF12630.2" "3" "2.06" "3er9.B_12-117.3er9.pdb1.pdb"
"1v15" "Colicin-DNase" "dna" "DNase/tRNase domain of colicin-like bacteriocin" "1pt3,3fbd,1zns,1v15,1v14,2ivh" "PF12639.2" "6" "2.40" "1v15.B_3-133.1v15.pdb2.pdb"
"3u4q" "PDDEXK_1" "dna" "PD-(D/E)XK nuclease superfamily" "3u44,4cei,4cej,4ceh,3u4q" "PF12705.2" "5" "2.80" "3u4q.B_789-1132.3u4q.pdb1.pdb"
"2fk6" "Lactamase_B_2" "rna" "Beta-lactamase superfamily domain" "4gcw,2fk6" "PF12706.2" "2" "2.90" "2fk6.C_32-270.2fk6.pdb1.pdb"
"4hqb" "DdrB" "dna" "DdrB-like protein" "4hqb" "PF12747.2" "1" "2.30" "4hqb.A_1-135.4hqb.pdb1.pdb"
"1vqo" "DZR" "rna" "Double zinc ribbon" "3cc2,4hub,3cc7,3ccq,1w2b,3ow2,1n8r,1yit,1yjw,1vq8,1nji,1q81,3o5h,1m90,1vqk,1vq9,1vqm,1kd1,1kqs,1yij,3cd6,1yj9,1vq5,1m1k,3cc4,1q82,1yjn,2qa4,1yhq,3o58,1vql,2otl,1vq6,1jj2,1qvg,1q7y,1s72,3ccr,3ccl,3ccs,3ccu,3ccv,3ccj,3g4s,3g6e,3g71,3cce,2qex,2otj,3cma,1vq4,1yi2,1vqn,3ccm,1vq7,1k73,3cme,1vqp,1s1i,1k9m,1k8a,1qvf,1q86,3i55,3i56,1kc8,3cxc,1vqo,3cpw" "PF12773.2" "69" "2.20" "1vqo.1_3-46.1vqo.pdb1.pdb"
"4oav" "Ank_2" "rna" "Ankyrin repeats (3 copies)" "4oav" "PF12796.2" "1" "2.10" "4oav.D_26-89.4oav.pdb1.pdb"
"3wpc" "LRR_4" "dna" "Leucine Rich repeats (2 copies)" "3wpd,3rw6,3wpc" "PF12799.2" "3" "1.60" "3wpc.A_220-256.3wpc.pdb1.pdb"
"3zpl" "MarR_2" "dna" "MarR family" "4lll,4kdp,4lln,4fx4,3zpl" "PF12802.2" "5" "2.80" "3zpl.F_38-99.3zpl.pdb2.pdb"
"4glx" "HHH_2" "dna" "Helix-hairpin-helix motif" "4bxo,4glx,2owo" "PF12826.2" "3" "1.90" "4glx.A_510-573.4glx.pdb1.pdb"
"1bl0" "HTH_18" "dna" "Helix-turn-helix domain" "3w6v,1bl0,1d5y" "PF12833.2" "3" "2.30" "1bl0.A_33-112.1bl0.pdb1.pdb"
"4jcy" "HTH_19" "dna" "Helix-turn-helix domain" "2or1,1rpe,4jcy,4jqd,4jcx,1per,3o9x" "PF12844.2" "7" "1.80" "4jcy.A_3-70.4jcy.pdb1.pdb"
"3j5s" "ABC_tran_2" "rna" "ABC transporter" "3j5s" "PF12848.2" "1" "7.50" "3j5s.D_230-312.3j5s.pdb1.pdb"
"4nm6" "Tet_JBP" "dna" "Oxygenase domain of the 2OGFeDO superfamily " "4lt5,4nm6,5cg9,5cg8" "PF12851.2" "4" "2.03" "4nm6.A_1290-1905.4nm6.pdb1.pdb"
"2ih2" "TaqI_C" "dna" "TaqI-like C-terminal specificity domain" "1g38,2np6,2np7,2ih2,2ibt,2ibs,2ih4,2jg3,2ih5" "PF12950.2" "9" "1.61" "2ih2.A_290-405.2ih2.pdb1.pdb"
"4m59" "PPR_2" "rna" "PPR repeat family " "4m59,4oe1" "PF13041.1" "2" "2.46" "4m59.B_246-292.4m59.pdb1.pdb"
"2xzo" "AAA_11" "rna" "AAA domain" "4b3g,2xzl,2xzo" "PF13086.1" "3" "2.40" "2xzo.A_470-673.2xzo.pdb1.pdb"
"2xzo" "AAA_12" "rna" "AAA domain" "4b3g,2xzl,2xzo" "PF13087.1" "3" "2.40" "2xzo.A_680-877.2xzo.pdb1.pdb"
"3glg" "DNA_pol3_delta2" "dna" "DNA polymerase III, delta subunit" "3gli,3glf,3glg" "PF13177.1" "3" "3.25" "3glg.J_9-168.3glg.pdb2.pdb"
"2asb" "KH_5" "rna" "NusA-like KH domain" "2atw,2asb" "PF13184.1" "2" "1.50" "2asb.A_214-282.2asb.pdb1.pdb"
"2v1u" "AAA_16" "dna" "AAA ATPase domain" "2v1u" "PF13191.1" "1" "3.10" "2v1u.A_32-183.2v1u.pdb1.pdb"
"2i13" "zinc_ribbon_2" "dna" "zinc-ribbon domain" "2i13" "PF13240.1" "1" "1.96" "2i13.B_79-115.2i13.pdb2.pdb"
"4qqw" "AAA_19" "dna" "Part of AAA domain" "4qqw" "PF13245.1" "1" "2.66" "4qqw.A_291-370.4qqw.pdb1.pdb"
"3j44" "zf-ribbon_3" "rna" "zinc-ribbon domain" "3j44" "PF13248.1" "1" "9.00" "3j44.g_13-38.3j44.pdb1.pdb"
"4a15" "Helicase_C_2" "dna" "Helicase C-terminal domain" "4a15" "PF13307.1" "1" "2.20" "4a15.A_440-597.4a15.pdb1.pdb"
"3rmp" "DUF4102" "dna" "Domain of unknown function (DUF4102)" "3rmp" "PF13356.1" "1" "2.21" "3rmp.A_3-78.3rmp.pdb1.pdb"
"3vh0" "PQQ_2" "dna" "PQQ-like domain" "3vh0" "PF13360.1" "1" "2.90" "3vh0.D_67-310.3vh0.pdb1.pdb"
"2is6" "UvrD_C" "dna" "UvrD-like helicase C-terminal domain" "4c30,4c2t,4c2u,4cej,4ceh,1uaa,2is1,3u44,3u4q,4cei,2is4,2is6,2is2,3pjr,2pjr,3k70,1w36" "PF13361.1" "17" "2.20" "2is6.B_277-617.2is6.pdb1.pdb"
"1u3e" "HNH_3" "dna" "HNH endonuclease" "1u3e" "PF13392.1" "1" "2.92" "1u3e.M_53-98.1u3e.pdb1.pdb"
"2qby" "AAA_22" "dna" "AAA domain" "2qby" "PF13401.1" "1" "3.35" "2qby.A_52-196.2qby.pdb1.pdb"
"4kis" "Zn_ribbon_recom" "dna" "Recombinase zinc beta ribbon domain" "4kis" "PF13408.1" "1" "3.20" "4kis.A_267-333.4kis.pdb1.pdb"
"4wls" "MerR_1" "dna" "MerR HTH family regulatory protein" "4r4e,4wlw,4wls,1exj,3d6y,3q5s,3q3d,2vz4,3q5p,3q2y,3d70,3q1m,3d6z,1r8d,3q5r,1r8e,3d71,1exi" "PF13411.1" "18" "2.11" "4wls.A_2-69.4wls.pdb1.pdb"
"4u7b" "HTH_24" "dna" "Winged helix-turn-helix DNA-binding" "3hot,3hos,4u7b,4r79" "PF13412.1" "4" "3.09" "4u7b.B_77-112.4u7b.pdb1.pdb"
"4hor" "TPR_11" "rna" "TPR repeat" "4hor,4hos,4hot" "PF13414.1" "3" "1.86" "4hor.A_247-335.4hor.pdb1.pdb"
"3gfi" "HTH_27" "dna" "Winged helix DNA-binding domain" "4rsb,4ru7,3gfi" "PF13463.1" "3" "2.10" "3gfi.A_37-102.3gfi.pdb1.pdb"
"4x9j" "zf-H2C2_2" "dna" "Zinc-finger double domain" "1llm,1a1l,2prt,1jk1,1a1f,1a1h,1a1g,4f6n,1p47,1mey,1jk2,4is1,2wbu,2wbs,1f2i,1a1i,1tf6,4f6m,3uk3,2i13,4f2j,4r2a,4m9e,4r2s,1a1j,1a1k,2gli,1ubd,1g2d,1g2f,1aay,1zaa,4r2p,4r2d,4r2e,4r2q,4r2r,4x9j,4r2c" "PF13465.1" "39" "1.41" "4x9j.A_149-174.4x9j.pdb1.pdb"
"4w9m" "AAA_23" "dna" "AAA domain" "4w9m" "PF13476.1" "1" "2.70" "4w9m.I_5-703.4w9m.pdb2.pdb"
"1x9m" "RNase_H_2" "dna" "RNase_H superfamily" "1skr,3u3y,1t8e,1t7p,1tk5,1sl2,1tk0,1tk8,1zyq,1tkd,1x9w,1x9m,1sks,4ynq" "PF13482.1" "14" "2.10" "1x9m.A_2-186.1x9m.pdb1.pdb"
"3htx" "Methyltransf_23" "rna" "Methyltransferase domain" "3htx" "PF13489.1" "1" "3.10" "3htx.A_689-880.3htx.pdb1.pdb"
"1xo0" "Phage_int_SAM_4" "dna" "Phage integrase, N-terminal SAM-like domain" "1nzb,1pvq,1ouq,2crx,1xo0,1q3v,1ma7,2hoi,4crx,1xns,2hof,1q3u,1kbu,2a3v,1crx,3c29,1pvr,3mgv,1pvp,3c28,5crx,3crx,1drg,1f44" "PF13495.1" "24" "2.00" "1xo0.A_26-102.1xo0.pdb1.pdb"
"4nih" "2OG-FeII_Oxy_2" "dna" "2OG-Fe(II) oxygenase superfamily" "2fdk,3rzj,3i3m,3i49,3khc,3i2o,3o1v,3bty,3rzh,3rzm,3rzg,4nid,3s5a,3h8r,3s57,3rzl,3h8o,4nig,4mg2,3h8x,3bu0,3bkz,3btz,4mgt,3o1s,3o1r,3o1o,3bi3,3o1p,3btx,3bie,4nii,3rzk,2fdf,2fdi,2fd8,3buc,2fdh,3o1m,2fdg,3o1u,3o1t,4nih" "PF13532.1" "43" "1.37" "4nih.A_18-210.4nih.pdb1.pdb"
"3gpl" "UvrD_C_2" "dna" "UvrD-like helicase C-terminal domain" "3gpl,3upu,3gp8" "PF13538.1" "3" "2.50" "3gpl.B_585-686.3gpl.pdb2.pdb"
"4i2o" "HTH_Crp_2" "dna" "Crp-like helix-turn-helix domain" "3e6c,3mzh,4i2o" "PF13545.1" "3" "1.77" "4i2o.B_159-230.4i2o.pdb1.pdb"
"4pu3" "HTH_31" "dna" "Helix-turn-helix domain" "4pu3,4pu4" "PF13560.1" "2" "3.39" "4pu3.D_28-95.4pu3.pdb1.pdb"
"4arc" "tRNA-synt_1_2" "rna" "Leucyl-tRNA synthetase, Domain 2" "4cqn,4as1,3zjt,2v0g,2bte,2byt,4ari,3zgz,3zju,4arc,4aq7,3zjv" "PF13603.1" "12" "2.00" "4arc.A_221-404.4arc.pdb1.pdb"
"3gpl" "AAA_30" "dna" "AAA domain" "3gpl,3upu,3k70,3gp8" "PF13604.1" "4" "2.50" "3gpl.B_338-526.3gpl.pdb2.pdb"
"2ih2" "Methyltransf_26" "dna" "Methyltransferase domain" "1g38,2ih4,2ibt,2ih2,2ibs,2ih5,2np7,2jg3,2np6" "PF13659.1" "9" "1.61" "2ih2.A_40-166.2ih2.pdb1.pdb"
"4qm6" "AAA_33" "rna" "AAA domain" "4qm6,4qm7,4mde,4mdf,1rrc,1rpz,3zvn,1rc8" "PF13671.1" "8" "1.50" "4qm6.B_10-146.4qm6.pdb1.pdb"
"4yoy" "DUF4152" "dna" "Protein of unknown function (DUF4152)" "4yox,4yoy,4yow,4yov" "PF13680.1" "4" "1.95" "4yoy.E_1-227.4yoy.pdb1.pdb"
"3wpc" "LRR_8" "dna" "Leucine rich repeat" "3ciy,3wpd,3wpc,3wph,3wpi,3wpg" "PF13855.1" "6" "1.60" "3wpc.B_618-665.3wpc.pdb1.pdb"
"3mdi" "NUDIX_2" "rna" "Nucleotide hydrolase" "3p6y,3mdg,3mdi,3q2t" "PF13869.1" "4" "2.07" "3mdi.A_35-222.3mdi.pdb1.pdb"
"1m5o" "RRM_5" "rna" "RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)" "1vby,1vc6,3bo2,3bo3,1sjf,2oih,1vc5,1a9n,1vbz,1vc0,1vbx,1vc7,1sj4,1sj3,4prf,3iin,1zzn,3bo4,2oj3,1m5o,1u6b" "PF13893.1" "21" "2.20" "1m5o.F_30-87.1m5o.pdb2.pdb"
"3s59" "Ig_2" "dna" "Immunoglobulin domain" "3s59,4oi8,3s58,4oi7" "PF13895.1" "4" "2.80" "3s59.B_22-117.3s59.pdb1.pdb"
"3ted" "Myb_DNA-bind_6" "dna" "Myb-like DNA-binding domain" "3osf,3osg,1h8a,1h88,3ted,3zqc,1h89" "PF13921.1" "7" "2.00" "3ted.A_1175-1251.3ted.pdb1.pdb"
"4ato" "ToxN_toxin" "rna" "Toxin ToxN, type III toxin-antitoxin system" "2xd0,4ato,2xdb,2xdd" "PF13958.1" "4" "2.20" "4ato.D_7-169.4ato.pdb1.pdb"
"4ujs" "Ribosomal_L18_c" "rna" "Ribosomal L18 C-terminal region" "4ulc,4ukg,4uka,4uk7,4ujg,4ulf,4ujx,4ukl,4ulk,4ujq,4uls,4ukn,4ujv,4ulq,4ul0,4uks,4ukx,4uk2,4ul7,4ul2,4ul5,4uki,4uln,4ujs,4ujl,4ujn,4uk0,4ula,4uk5,3j44,4uji,4ukv,4ukc,4ukq,4ulh,1s1i,4a1c,4a1e,4a17,4a1a,3o58,3o5h" "PF14204.1" "42" "2.80" "4ujs.O_192-289.4ujs.pdb1.pdb"
"3d2w" "RRM_6" "dna" "RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)" "2g4b,3d2w,3vah,4tu8,4tu9,4qu6,4qu7,3vaj,3q2t" "PF14259.1" "9" "1.65" "3d2w.E_193-256.3d2w.pdb2.pdb"
"1k4t" "Topo_C_assoc" "dna" "C-terminal topoisomerase domain" "1a31,1k4s,1rr8,1sc7,1r49,1rrj,1t8i,1tl8,1seu,1a35,2b9s,1a36,1k4t,1ej9,1lpq" "PF14370.1" "15" "2.10" "1k4t.A_694-765.1k4t.pdb1.pdb"
"4ujs" "Ribos_L4_asso_C" "rna" "60S ribosomal protein L4 C-terminal domain" "4uji,4ulf,4ujx,4ulk,4ujg,4ukx,4uln,4uki,4ukl,4uka,4ukg,4ul5,4ul7,4uk7,4ujq,4ujn,4uk2,4ul2,4ulq,4ujs,4uls,4ujv,4ul0,4ukn,4ulc,4ujl,4uks,4uk0,4ula,4ukq,4ukc,4ulh,4uk5,4ukv" "PF14374.1" "34" "2.80" "4ujs.N_272-352.4ujs.pdb1.pdb"
"3wc2" "Thg1C" "rna" "Thg1 C terminal domain" "3wc2,3wc1" "PF14413.1" "2" "3.64" "3wc2.C_138-268.3wc2.pdb1.pdb"
"3gp8" "HHH_4" "dna" "Helix-hairpin-helix containing domain" "3gpl,3gp8" "PF14490.1" "2" "2.50" "3gp8.A_153-242.3gp8.pdb1.pdb"
"4juw" "EFG_II" "rna" "Elongation Factor G, domain II" "3sfs,4juw,3uoq,4b8h,3j18,4b8f,4btc,2om7,4cr1,2wrk,2wri,4qs2" "PF14492.1" "12" "2.86" "4juw.Y_404-478.4juw.pdb1.pdb"
"1wte" "RE_EcoO109I" "dna" "Type II restriction endonuclease EcoO109I" "1wte" "PF14511.1" "1" "1.90" "1wte.A_5-230.1wte.pdb1.pdb"
"4glx" "HHH_5" "dna" "Helix-hairpin-helix domain" "1c7y,4glx,2p6r,3auo,2owo,2bgw" "PF14520.1" "6" "1.90" "4glx.A_442-502.4glx.pdb1.pdb"
"3j16" "Cass2" "rna" "Integron-associated effector binding protein" "3j16" "PF14526.1" "1" "7.20" "3j16.A_28-174.3j16.pdb1.pdb"
"2vs7" "LAGLIDADG_3" "dna" "LAGLIDADG-like domain" "4unb,2vs7,1mow,2vs8,5akn,4unc,5ak9,4d6o,5akf,4d6n,5akm,4una,4ut0,4un7,4un9,4un8" "PF14528.1" "16" "2.05" "2vs7.D_11-98.2vs7.pdb2.pdb"
"3qws" "P22_Cro" "dna" "DNA-binding transcriptional regulator Cro" "3qws" "PF14549.1" "1" "2.10" "3qws.A_2-62.3qws.pdb1.pdb"
"1dmu" "Endonuc_BglI" "dna" "Restriction endonuclease BglI" "1dmu" "PF14562.1" "1" "2.20" "1dmu.C_6-297.1dmu.pdb1.pdb"
"4byx" "GTP_EFTU_D4" "rna" "Elongation factor Tu domain 4" "4byx,4upy,4upz" "PF14578.1" "3" "6.60" "4byx.V_459-547.4byx.pdb1.pdb"
"3f2b" "HHH_6" "dna" "Helix-hairpin-helix motif" "3f2c,3f2d,4iqj,3e0d,3f2b" "PF14579.1" "5" "2.39" "3f2b.A_1356-1443.3f2b.pdb1.pdb"
"1a9n" "LRR_9" "rna" "Leucine-rich repeat" "1a9n" "PF14580.1" "1" "2.38" "1a9n.A_2-163.1a9n.pdb1.pdb"
"4lj0" "zf-CCCH_2" "rna" "Zinc finger C-x8-C-x5-C-x3-H type" "4lj0" "PF14608.1" "1" "2.15" "4lj0.A_404-421.4lj0.pdb1.pdb"
"2nug" "Ribonucleas_3_3" "rna" "Ribonuclease-III-like" "4m30,4m2z,1yyk,2nug,2ez6,2nue,2nuf,1rc7" "PF14622.1" "8" "1.70" "2nug.B_17-138.2nug.pdb1.pdb"
"4rb8" "Ribosomal_TL5_C" "rna" "Ribosomal protein TL5, C-terminal domain" "2y0z,2wro,3zn9,2wrr,2y15,3kno,2y13,4g5u,2y19,3zvp,2y0v,2y0x,3huz,2x9u,2x9s,4io9,4ioa,2y11,2y17,4g5n,2wrl,4abs,3uyg,4ioc,3v6x,4b8i,4ejb,3zne,4b8g,3v25,3uzn,2wdn,2wdl,2wdj,3v23,2wdi,4g5l,2wh2,2wrj,2wh4,4qs3,4w2d,4w2b,1vxt,1vx9,4rb6,4rbe,1vxn,1vvy,4qs1,3pio,4wwt,4wwe,1vvu,4qcr,1vvq,4rbg,4rbi,1vxq,4qcv,4qct,4rbk,4l6j,1vvw,1vw0,1vxj,4rb8,4qcz,1vvo,3uz8,3v27,3kni,4dhc,2b9p,3f1h,4kd9,1vsp,3tvh,4ejc,3v2d,3v2f,3f1f,4bye,4nvx,3kiy,3uxq,4kbw,2b66,3i8i,1voy,4g5w,2hgq,1vsa,3uxr,4dha,2hgu,2hgj,2b9n,3kir,3knm,3d5b,2xqe,1vor,3i8f,3i9e,3kiw,4qcx,4kdb,1vvm,4k0q,4jux,4kfi,4btd,4k0m,4kcz,4kfl,3v6w,2xg0,4kd2,4kdh,4kbu,4kdk,4qjs,4l6l,2xg2,1vy3,4qcp,4byc,1vxl,4rbc,1vy1,1vvs,4nw1,4nvv,4nvz,4rba,3d5d,3v29,1vou,3mrz,3kit,4qd1,1yl3,3knk,4qcn,3pyv,3pyr,3uzh,3pip,3pyt,3ms1,1vow,3hux,3uz2,3i9c,3pyo" "PF14693.1" "156" "2.40" "4rb8.Z_121-174.4rb8.pdb1.pdb"
"1msw" "RPOL_N" "hybrid" "DNA-directed RNA polymerase N-terminal" "3e2e,1s0v,1cez,1h38,4boc,1msw,2pi5,2pi4,3e3j,1qln,1s77,1s76" "PF14700.1" "12" "2.10" "1msw.D_34-325.1msw.pdb1.pdb"
"1mus" "Tnp_DNA_bind" "dna" "Transposase DNA-binding" "3ecp,1mus,1mm8,1muh,4dm0" "PF14706.1" "5" "1.90" "1mus.A_11-69.1mus.pdb1.pdb"
"3j8g" "KH_dom-like" "rna" "KH-domain-like of EngA bacterial GTPase enzymes, C-terminal" "3j8g" "PF14714.1" "1" "5.00" "3j8g.X_378-458.3j8g.pdb1.pdb"
"4kli" "HHH_8" "dna" "Helix-hairpin-helix domain" "4tur,4qzh,4rpx,4qzg,4k4i,4ub4,4rq1,4rq6,4rq5,5bom,4r65,4rq7,4qzd,4yd1,4uay,4r63,4ub1,4o5k,4php,4qze,4ub2,4phd,4ubb,4tuq,4pgq,4pgx,4qzc,4rq8,4qz8,4rq3,4pgy,4rpz,4tus,4pha,4r64,4tup,4rq0,4rt3,4qza,4qz9,4phe,4qzb,4ub5,4p2h,3mgh,3pml,3mdc,3lk9,4gxi,3v7k,4lvs,4f5n,4f5o,3mda,4f5r,3mby,3c5f,3c5g,7icn,8icj,8icc,1bpz,4f5p,1bpx,2gws,1bpy,2ihm,4m9j,1xsl,9ics,9icr,1rzt,3upq,4dob,4f5q,4doc,3mgi,4ubc,4fo6,3uq2,9icn,4gxj,3hx0,9ick,9icp,5bpc,4ycx,4yd2,5bol,4do9,4uaw,2iso,4klq,3pmn,3rh5,4qzi,2isp,3rh6,4klu,3rje,2pxi,2bcv,2bcr,2bcu,2bcs,3jpn,2i9g,3jpq,3uq0,3jpp,3jpo,2p66,2pfn,2pfo,2pfp,2pfq,2bcq,3c2m,3gdx,3tfr,3isc,3isb,1tva,1tv9,4kld,4doa,4m04,3c2l,3c2k,3hw8,3tfs,3isd,4qzf,1mq3,4nln,4m2y,1zqb,3rjh,1zqa,1zjn,1zjm,1xsp,1zqp,4o5e,1mq2,4rq2,1zqn,3rjk,3rjg,1xsn,3rjj,1zqo,4rpy,3jpr,2fmq,3rjf,2fms,3rji,3jps,2fmp,1zqi,1zqg,3jpt,1zqt,3pnc,4o5c,4gxk,3rh4,4ph5,4o9m,4klg,4rq4,4mfc,4klm,4mf2,4kls,4klj,4nlz,4klo,4ny8,4lzg,4kli,4k4h,4ub3,4m9l,4m47,4jwn,4nlk,4ppx,4m9g,4jwm,4klp,4nm1,4klf,3hwt,4kle,4nxz,4m0a,4kll,4klt,4klh,4mff,4uaz,4k4g,4mf8,4m9h,4mfa,4rt2,4m9n,4nm2,3auo,4r66" "PF14716.1" "212" "1.60" "4kli.A_12-78.4kli.pdb1.pdb"
"2q2t" "DNA_ligase_OB_2" "dna" "DNA ligase OB-like domain" "2q2t,2q2u" "PF14743.1" "2" "2.30" "2q2t.A_224-293.2q2t.pdb1.pdb"
"4lzg" "DNA_pol_B_thumb" "dna" "DNA polymerase beta thumb " "3hx0,1xsl,4uaw,4qzi,1rzt,4klp,4mf8,4kle,4mfa,4jwn,4kll,4k4h,4p4m,4ppx,4k4g,4ub3,4ubc,4klo,4uaz,4kls,3hwt,4o9m,4rt2,4nxz,4klh,3uxp,4klt,4i2f,4i29,4klf,4p4p,4m9h,4m9l,4i28,4klm,3au6,4klj,4r66,4jwm,4nlz,4nlk,4nm2,4kli,4m9g,4i2a,4m0a,4nm1,4lzg,3auo,4qzb,4qz8,4o5k,4rt3,4tur,4rq0,4phd,4php,4pgy,4qzg,4phe,4qzd,4ub4,4rq5,4pgx,4tus,4qzh,4r65,4qz9,4rq7,4qze,4qzc,4rpz,4qza,4p4o,4rq8,4tuq,4ubb,4k4i,4rq6,4pha,4rq3,4tup,4yd1,4rq1,4ub5,4uay,4rpx,4ycx,5bol,4yd2,1huo,1huz,1zjn,1zjm,4doc,4f5r,4doa,1mq2,1tva,1tv9,4f5p,4f5q,8icu,1xsp,1xsn,4f5n,4dob,1mq3,8icv,8icr,8icp,8icn,8ick,4klq,4klg,1bpx,1bpy,1bpz,4gxj,3jpp,4do9,3c5f,2bpg,3isd,2pfp,3c5g,3isb,2fmp,2bpf,2pfq,2bcr,2pxi,2bcs,3jpo,3rh5,2bcu,3jpn,2bcv,2fms,2pfo,2fmq,3pnc,4lvs,3uq2,3uq0,3upq,2isp,2ihm,3hw8,3pml,2gws,2pfn,3gdx,2p66,3pmn,2i9g,2iso,3mgh,3mby,3rjh,3rjj,3c2k,3lk9,3c2m,3mda,3c2l,3mgi,3mdc,3jpr,3rji,4fo6,3rjk,3jps,3jpq,3v7j,2bcq,3rh6,3v7k,3rjf,3jpt,4rq4,4ph5,4rpy,4qzf,4i2g,3rh4,3tfs,4nln,4kld,4rq2,4klu,3tfr,4m04" "PF14791.1" "193" "1.60" "4lzg.A_430-494.4lzg.pdb1.pdb"
"4kli" "DNA_pol_B_palm" "dna" "DNA polymerase beta palm " "4rpy,3rh4,4m9j,4kld,4rq2,4m2y,3tfs,3tfr,4o5e,4nln,4qzf,4ubc,1rzt,3hx0,4i2g,4m04,4klu,4o5k,4pgx,4rq5,4rq0,4qzd,4pha,4ub2,4phe,4ubb,4yd1,4k4i,4rpx,4rq7,4tur,4ub4,4r63,5bom,4php,4rq6,4qz8,4rq1,4tuq,4uay,4rq3,4pgy,4r64,4tup,4rq8,4rt3,4qzc,4phd,4pgq,4qzb,4qz9,4p2h,4p4o,4qza,4ub1,4qzh,4tus,4r65,4qze,4qzg,4rpz,4ub5,3c5g,1xsl,3c5f,3mgh,2ihm,4uaw,1bpx,4qzi,3rh5,4klq,4o9m,4k4g,4nm2,4i27,3uxp,4ub3,4k4h,9icr,4iqw,4p4m,4r66,9ics,4i2a,9ict,4iqv,9icx,4m9h,4mfa,4mf8,9icw,4m9n,4i2f,4rt2,9icv,4i28,4i2b,9icu,4p4p,9icy,4lzg,4m9l,4klf,4nxz,4i29,4klt,4mff,4i2c,4kls,4klj,3hwt,4ppx,4jwm,4kll,4m0a,4m47,4kle,4kli,4jwn,4nlz,4nlk,4klp,4m9g,4mf2,4klm,4nm1,4mfc,4klo,4ny8,4klh,4uaz,3pml,2gws,4o5c,4rq4,4ph5,4yd2,4ycx,5bpc,5bol,3rjh,8icl,7icu,8icj,8icg,3rh6,8ice,8icm,8icc,3rje,3rjg,8ici,3gdx,3rjf,8icb,7icv,8ich,9icl,3c2m,8icf,8ica,8ick,3hw8,3jpt,9ich,9icg,3jps,9icq,9icf,3jpr,9ice,3jpq,9icc,3jpp,9ici,3lk9,9icp,3mgi,9ico,9icn,3mdc,9icm,3mda,3mby,9ick,4klg,9icj,3ogu,9icb,9ica,8ics,3pmn,8icr,3pnc,8icq,8icp,4do9,8ico,4fo6,8ict,8icz,3jpo,3jpn,8icy,3isd,8icx,3isc,8icw,3isb,8icv,8icu,8icn,4f5n,2bcv,2bcu,2bcs,2bcr,4doc,3v72,4dob,3v7j,4doa,2bpf,4f5o,2bpg,2fms,1mq2,2fmq,4f5r,1mq3,2fmp,4f5q,4f5p,1tv9,2bcq,1tva,1zqc,1zqd,1zqo,1zqe,1zqf,1zqn,1zqg,1zqh,1zqm,1zqi,1zqj,1zql,1zqp,1zqb,1zqa,3v7k,1zqt,1zqs,1xsn,1xsp,1zqr,1zjm,1zjn,1zqq,1zqk,1bpy,4i2e,2pfn,7icf,2p66,7ice,7ico,7ici,3c2k,3rjk,7icn,7ick,2pfo,7icj,2pfq,2pxi,2pfp,7icl,7ich,7icg,1bpz,7icm,7icq,3rjj,2isp,4lvs,7icp,1huz,2i9g,7ics,3rji,7ict,3upq,1huo,3c2l,4gxk,2iso,4gxj,4gxi,7icr,3uq0,3uq2" "PF14792.1" "304" "1.60" "4kli.A_149-262.4kli.pdb1.pdb"
"1j2b" "TGT_C1" "rna" "C1 domain of tRNA-guanine transglycosylase dimerisation" "1j2b" "PF14809.1" "1" "3.30" "1j2b.A_361-430.1j2b.pdb1.pdb"
"1j2b" "TGT_C2" "rna" "Patch-forming domain C2 of tRNA-guanine transglycosylase" "1j2b" "PF14810.1" "1" "3.30" "1j2b.B_437-507.1j2b.pdb1.pdb"
"5dpk" "NUDIX_4" "dna" "NUDIX domain" "3fsq,1rrq,3g0q,1rrs,3fsp,1vrl,4yph,4yoq,4ypr,5dpk" "PF14815.1" "10" "2.20" "5dpk.A_241-353.5dpk.pdb1.pdb"
"3glg" "DNA_pol3_delt_C" "dna" "Processivity clamp loader gamma complex DNA pol III C-term" "3gli,3glg,3glf" "PF14840.1" "3" "3.25" "3glg.A_214-333.3glg.pdb1.pdb"
"5aj3" "MRP-S26" "rna" "Mitochondrial ribosome subunit S26" "5aj3" "PF14943.1" "1" "3.60" "5aj3.d_28-198.5aj3.pdb1.pdb"
"5aj3" "MRP-S24" "rna" "Mitochondrial ribosome subunit S24" "5aj3,3j6v" "PF14955.1" "2" "3.60" "5aj3.C_36-167.5aj3.pdb1.pdb"
"3j7y" "MRP-63" "rna" "Mitochondrial ribosome protein 63" "3j7y" "PF14978.1" "1" "3.40" "3j7y.o_13-101.3j7y.pdb1.pdb"
"4qoz" "SLBP_RNA_bind" "rna" "Histone RNA hairpin-binding protein RNA-binding domain" "4l8r,4tv0,4qoz,4hxh,4tux,4tuw" "PF15247.1" "6" "2.30" "4qoz.C_128-199.4qoz.pdb1.pdb"
"3ndh" "ThaI" "dna" "Restriction endonuclease ThaI" "3ndh" "PF15514.1" "1" "1.30" "3ndh.B_14-215.3ndh.pdb1.pdb"
"2odi" "MvaI_BcnI" "dna" "MvaI/BcnI restriction endonuclease family" "3imb,2oaa,2odi,2q10" "PF15515.1" "4" "1.45" "2odi.B_9-231.2odi.pdb2.pdb"
"4ne1" "CENP-S" "dna" "Kinetochore component CENP-S" "4ne1" "PF15630.1" "1" "6.50" "4ne1.n_17-92.4ne1.pdb6.pdb"