Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/2lef.std.txt Дата изменения: Fri Jan 21 02:45:57 2011 Дата индексирования: Fri Feb 11 17:56:48 2011 Кодировка:

REM -------------------------------------------------------------------- 2LEF
REM 2LEF
REM STRIDE: Knowledge-based secondary structure assignment 2LEF
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2LEF
REM 2LEF
REM Residue accessible surface area calculation 2LEF
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2LEF
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2LEF
REM 2LEF
REM ------------------------ General information ----------------------- 2LEF
REM 2LEF
HDR GENE REGULATION/DNA 13-OCT-98 2LEF 2LEF
CMP MOL_ID: 1; 2LEF
CMP MOLECULE: PROTEIN (LYMPHOID ENHANCER-BINDING FACTOR); 2LEF
CMP CHAIN: A; 2LEF
CMP FRAGMENT: HMG; 2LEF
CMP SYNONYM: LEF-1 HMG; 2LEF
CMP ENGINEERED: YES; 2LEF
CMP MUTATION: YES; 2LEF
CMP MOL_ID: 2; 2LEF
CMP MOLECULE: DNA (5'- 2LEF
CMP D(*CP*AP*CP*CP*CP*TP*TP*TP*GP*AP*AP*GP*CP*TP*C)-3'); 2LEF
CMP CHAIN: B; 2LEF
CMP FRAGMENT: LEF-1 BINDING SITE; 2LEF
CMP ENGINEERED: YES; 2LEF
CMP MOL_ID: 3; 2LEF
CMP MOLECULE: DNA (5'- 2LEF
CMP D(*GP*AP*GP*CP*TP*TP*CP*AP*AP*AP*GP*GP*GP*TP*G)-3'); 2LEF
CMP CHAIN: C; 2LEF
CMP FRAGMENT: LEF-1 BINDING SITE; 2LEF
CMP ENGINEERED: YES 2LEF
SRC MOL_ID: 1; 2LEF
SRC ORGANISM_SCIENTIFIC: MUS MUSCULUS; 2LEF
SRC ORGANISM_COMMON: HOUSE MOUSE; 2LEF
SRC ORGANISM_TAXID: 10090; 2LEF
SRC STRAIN: BL21 (DE3); 2LEF
SRC CELL: PRE-B AND T LYMPHOCYTE; 2LEF
SRC GENE: LEF1; 2LEF
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); 2LEF
SRC EXPRESSION_SYSTEM_TAXID: 469008; 2LEF
SRC EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); 2LEF
SRC EXPRESSION_SYSTEM_VECTOR: ESCHERICHIA COLI; 2LEF
SRC EXPRESSION_SYSTEM_PLASMID: PET-21A; 2LEF
SRC EXPRESSION_SYSTEM_GENE: LEF1; 2LEF
SRC MOL_ID: 2; 2LEF
SRC SYNTHETIC: YES; 2LEF
SRC MOL_ID: 3; 2LEF
SRC SYNTHETIC: YES 2LEF
AUT X.LI,J.J.LOVE,D.A.CASE,P.E.WRIGHT 2LEF
REM 2LEF
REM -------------------- Secondary structure summary ------------------- 2LEF
REM 2LEF
CHN /data/npidb/pdb/pdb_new/all/pdb2lef.pdb A 2LEF
REM 2LEF
REM . . . . . 2LEF
SEQ 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQA 50 2LEF
STR TTT HHHHHHHHHHHHHHHH HHHHHHHHHHHHH HHHHH 2LEF
REM 2LEF
REM . . . 2LEF
SEQ 51 KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86 2LEF
STR HHHHHHHHHHHHHHHHTTTT TTTTTTTTTTTTTT 2LEF
REM 2LEF
REM 2LEF
REM 2LEF
LOC AlphaHelix ALA 9 A GLU 24 A 2LEF
LOC AlphaHelix SER 30 A HIS 42 A 2LEF
LOC AlphaHelix ARG 46 A LEU 66 A 2LEF
LOC TurnII TYR 67 A TRP 70 A 2LEF
LOC TurnIV ARG 73 A TYR 76 A 2LEF
LOC TurnII ASN 75 A LYS 78 A 2LEF
LOC TurnIV GLY 77 A LYS 80 A 2LEF
LOC TurnIV LYS 81 A ARG 84 A 2LEF
LOC GammaInv MET 1 A ILE 3 A 2LEF
LOC GammaInv ARG 84 A LYS 86 A 2LEF
REM 2LEF
REM --------------- Detailed secondary structure assignment------------- 2LEF
REM 2LEF
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2LEF
ASG MET A 1 1 T Turn 360.00 -174.15 181.4 2LEF
ASG HIS A 2 2 T Turn -70.56 85.44 106.1 2LEF
ASG ILE A 3 3 T Turn -77.79 101.08 23.1 2LEF
ASG LYS A 4 4 C Coil -45.75 152.66 124.7 2LEF
ASG LYS A 5 5 C Coil -55.99 147.00 77.2 2LEF
ASG PRO A 6 6 C Coil -66.85 96.26 31.5 2LEF
ASG LEU A 7 7 C Coil -39.12 143.19 58.9 2LEF
ASG ASN A 8 8 C Coil -98.87 179.34 84.3 2LEF
ASG ALA A 9 9 H AlphaHelix -38.95 -63.39 5.1 2LEF
ASG PHE A 10 10 H AlphaHelix -68.30 -23.54 70.9 2LEF
ASG MET A 11 11 H AlphaHelix -69.29 -38.57 72.5 2LEF
ASG LEU A 12 12 H AlphaHelix -68.31 -44.08 22.0 2LEF
ASG TYR A 13 13 H AlphaHelix -55.46 -44.57 5.4 2LEF
ASG MET A 14 14 H AlphaHelix -54.20 -62.74 38.9 2LEF
ASG LYS A 15 15 H AlphaHelix -45.10 -43.50 144.5 2LEF
ASG GLU A 16 16 H AlphaHelix -71.44 -66.09 97.6 2LEF
ASG MET A 17 17 H AlphaHelix -79.83 -32.18 42.7 2LEF
ASG ARG A 18 18 H AlphaHelix -54.95 -43.21 99.6 2LEF
ASG ALA A 19 19 H AlphaHelix -52.80 -49.43 51.5 2LEF
ASG ASN A 20 20 H AlphaHelix -59.94 -48.51 74.4 2LEF
ASG VAL A 21 21 H AlphaHelix -52.71 -51.45 8.1 2LEF
ASG VAL A 22 22 H AlphaHelix -63.05 -38.00 44.9 2LEF
ASG ALA A 23 23 H AlphaHelix -65.29 -45.39 79.9 2LEF
ASG GLU A 24 24 H AlphaHelix -73.50 -53.44 151.9 2LEF
ASG SER A 25 25 C Coil -82.87 177.52 40.7 2LEF
ASG THR A 26 26 C Coil -84.09 -10.46 119.2 2LEF
ASG LEU A 27 27 C Coil -90.23 155.94 45.5 2LEF
ASG LYS A 28 28 C Coil -137.08 -42.39 141.5 2LEF
ASG GLU A 29 29 C Coil -39.26 106.29 115.9 2LEF
ASG SER A 30 30 H AlphaHelix -53.58 -47.60 64.7 2LEF
ASG ALA A 31 31 H AlphaHelix -56.80 -38.48 74.6 2LEF
ASG ALA A 32 32 H AlphaHelix -71.07 -50.94 34.2 2LEF
ASG ILE A 33 33 H AlphaHelix -53.33 -34.94 0.2 2LEF
ASG ASN A 34 34 H AlphaHelix -74.98 -36.11 52.2 2LEF
ASG GLN A 35 35 H AlphaHelix -64.50 -37.88 143.2 2LEF
ASG ILE A 36 36 H AlphaHelix -55.01 -49.88 50.5 2LEF
ASG LEU A 37 37 H AlphaHelix -53.07 -45.16 4.6 2LEF
ASG GLY A 38 38 H AlphaHelix -47.62 -54.94 24.6 2LEF
ASG ARG A 39 39 H AlphaHelix -55.58 -52.82 133.4 2LEF
ASG ARG A 40 40 H AlphaHelix -59.29 -28.56 64.9 2LEF
ASG TRP A 41 41 H AlphaHelix -52.51 -38.52 22.2 2LEF
ASG HIS A 42 42 H AlphaHelix -61.30 -19.69 152.3 2LEF
ASG ALA A 43 43 C Coil -79.44 -19.16 50.4 2LEF
ASG LEU A 44 44 C Coil -73.96 122.35 13.8 2LEF
ASG SER A 45 45 C Coil -59.10 158.93 48.0 2LEF
ASG ARG A 46 46 H AlphaHelix -50.75 -36.85 200.3 2LEF
ASG GLU A 47 47 H AlphaHelix -67.00 -49.94 105.3 2LEF
ASG GLU A 48 48 H AlphaHelix -56.20 -43.20 86.9 2LEF
ASG GLN A 49 49 H AlphaHelix -56.65 -59.20 63.1 2LEF
ASG ALA A 50 50 H AlphaHelix -46.93 -43.61 42.9 2LEF
ASG LYS A 51 51 H AlphaHelix -47.59 -40.14 65.4 2LEF
ASG TYR A 52 52 H AlphaHelix -64.73 -35.40 6.8 2LEF
ASG TYR A 53 53 H AlphaHelix -72.00 -42.54 112.6 2LEF
ASG GLU A 54 54 H AlphaHelix -53.84 -64.16 113.4 2LEF
ASG LEU A 55 55 H AlphaHelix -46.02 -52.52 59.3 2LEF
ASG ALA A 56 56 H AlphaHelix -50.13 -51.13 4.2 2LEF
ASG ARG A 57 57 H AlphaHelix -64.16 -36.09 144.1 2LEF
ASG LYS A 58 58 H AlphaHelix -57.72 -51.88 123.8 2LEF
ASG GLU A 59 59 H AlphaHelix -57.30 -40.55 84.4 2LEF
ASG ARG A 60 60 H AlphaHelix -58.77 -47.90 64.9 2LEF
ASG GLN A 61 61 H AlphaHelix -65.13 -44.08 97.0 2LEF
ASG LEU A 62 62 H AlphaHelix -53.30 -54.56 63.9 2LEF
ASG HIS A 63 63 H AlphaHelix -42.08 -55.59 28.3 2LEF
ASG MET A 64 64 H AlphaHelix -60.79 -31.27 95.1 2LEF
ASG GLN A 65 65 H AlphaHelix -78.34 -53.04 128.9 2LEF
ASG LEU A 66 66 H AlphaHelix -58.17 -40.77 101.4 2LEF
ASG TYR A 67 67 T Turn -136.05 83.17 88.5 2LEF
ASG PRO A 68 68 T Turn -46.09 103.92 113.8 2LEF
ASG GLY A 69 69 T Turn 71.52 25.23 41.6 2LEF
ASG TRP A 70 70 T Turn -61.18 113.52 60.0 2LEF
ASG SER A 71 71 C Coil -81.72 134.19 70.9 2LEF
ASG ALA A 72 72 C Coil -39.86 -47.32 45.9 2LEF
ASG ARG A 73 73 T Turn -55.67 73.55 146.6 2LEF
ASG ASP A 74 74 T Turn -90.18 -20.33 21.8 2LEF
ASG ASN A 75 75 T Turn -152.59 20.93 41.6 2LEF
ASG TYR A 76 76 T Turn -58.04 123.58 190.1 2LEF
ASG GLY A 77 77 T Turn 69.78 21.82 64.8 2LEF
ASG LYS A 78 78 T Turn -89.45 -48.30 149.4 2LEF
ASG LYS A 79 79 T Turn -69.46 139.47 154.3 2LEF
ASG LYS A 80 80 T Turn -61.25 -52.32 179.7 2LEF
ASG LYS A 81 81 T Turn 71.14 143.36 92.7 2LEF
ASG ARG A 82 82 T Turn -95.40 173.77 168.7 2LEF
ASG LYS A 83 83 T Turn 60.99 -59.67 177.4 2LEF
ASG ARG A 84 84 T Turn 72.38 -73.96 157.1 2LEF
ASG GLU A 85 85 T Turn -81.40 64.65 189.6 2LEF
ASG LYS A 86 86 T Turn -59.96 360.00 231.0 2LEF